AT1G11145

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000148
Physical Location & Seq
Reverse (-)
3727532 .. 3728166
635 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11145.1

Sequence Viewer

Length: 489 bp
ATGGAGGTGAAGCAGGGACTCACTCTGTTTGCTAGGAAGCAGGACATGAAGTCTGTATGGGAAATCACTGGAAGCAATATCGACCTAGTATGCATTGGCAACTTTTGTAGAAGCTTGAAGGACTTGAGCTCTAGGGGAGGCACAGATGCATCTACTAACACATGTATGCTTCCTTGGCAATATAGTTTGCAGAAACCGTTGCTTGGGGTCAGTTATTTAAACAGTGACGGTAGTTCTCAGTCGACACCTCATGGTAGCAATGGGTTAGTTAAGAGAGGGGCAACATACATTGTCTCAGATGATCTTACTATTTGCGTAAAGAAGAAGTTTGATGTGAACTTGGACGATATTTTTGAGCATGAAATCAACATTGGCAAAACACATAGCCTCATTCGTGACATCCACTGCCTTGACTACGGCTTTCGGGAGCTTTCTTTCAGAGAAACGACTCTAAAGCATCAATCACATGCCCTCTGTGGAGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

162

Amino Acids

18.05

Weight (kDa)

6.58

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 16 - 72 6e-09 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 203
AflIII ACRYGT 1 cut(s) 161
AgsI TTSAA 1 cut(s) 118
AhdI GACNNNNNGTC 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 3 cut(s) 114, 129, 430
AluI AGCT 3 cut(s) 114, 129, 430
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 298
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AsuHPI GGTGA 1 cut(s) 19
BanII GRGCYC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 3 cut(s) 33, 86, 132
BmeRI GACNNNNNGTC 1 cut(s) 49
BmsI GCATC 3 cut(s) 136, 158, 466
BpuEI CTTGAG 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 399
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 251, 309
BseNI ACTGG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 131
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 301
BspCNI CTCAG 2 cut(s) 250, 308
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 173
Bst4CI ACNGT 3 cut(s) 198, 224, 230
BstDEI CTNAG 2 cut(s) 237, 295
BstF5I GGATG 1 cut(s) 399
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNSI RCATGY 2 cut(s) 165, 470
BtsCI GGATG 1 cut(s) 399
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 3 cut(s) 66, 229, 403
CviAII CATG 5 cut(s) 46, 162, 251, 359, 467
CviJI RGCY 5 cut(s) 114, 129, 387, 420, 430
CviKI_1 RGCY 5 cut(s) 114, 129, 387, 420, 430
DdeI CTNAG 2 cut(s) 237, 295
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
DraI TTTAAA 1 cut(s) 219
DriI GACNNNNNGTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 173
EcoT22I ATGCAT 2 cut(s) 95, 151
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 5 cut(s) 49, 165, 254, 362, 470
FaqI GGGAC 1 cut(s) 30
FatI CATG 5 cut(s) 45, 161, 250, 358, 466
FblI GTMKAC 1 cut(s) 242
FokI GGATG 1 cut(s) 386
FriOI GRGCYC 1 cut(s) 131
FspBI CTAG 3 cut(s) 33, 86, 132
Hin1II CATG 5 cut(s) 49, 165, 254, 362, 470
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 2 cut(s) 18, 448
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 243, 337
Hpy188I TCNGA 2 cut(s) 298, 440
Hpy188III TCNNGA 2 cut(s) 395, 425
Hpy8I GTNNAC 2 cut(s) 243, 337
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 3 cut(s) 198, 224, 230
HpyCH4V TGCA 3 cut(s) 93, 149, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 2 cut(s) 237, 295
Hsp92II CATG 5 cut(s) 49, 165, 254, 362, 470
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 2 cut(s) 427, 479
LpnPI CCDG 2 cut(s) 26, 54
LweI GCATC 3 cut(s) 136, 158, 466
MaeI CTAG 3 cut(s) 33, 86, 132
MaeIII GTNAC 2 cut(s) 224, 395
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 131
MlyI GAGTC 2 cut(s) 12, 442
MnlI CCTC 5 cut(s) 131, 258, 269, 398, 482
Mph1103I ATGCAT 2 cut(s) 95, 151
MseI TTAA 2 cut(s) 218, 270
MslI CAYNNNNRTG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 1 cut(s) 301
NlaIII CATG 5 cut(s) 49, 165, 254, 362, 470
NmuCI GTSAC 2 cut(s) 224, 395
NsiI ATGCAT 2 cut(s) 95, 151
NspI RCATGY 2 cut(s) 165, 470
PciI ACATGT 1 cut(s) 161
PleI GAGTC 2 cut(s) 12, 442
PpsI GAGTC 2 cut(s) 12, 442
PscI ACATGT 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 131
SalI GTCGAC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 218, 270
Sau3AI GATC 1 cut(s) 301
SchI GAGTC 2 cut(s) 12, 442
SduI GDGCHC 1 cut(s) 131
SetI ASST 6 cut(s) 9, 87, 116, 131, 250, 432
SfaNI GCATC 3 cut(s) 136, 158, 466
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
SspMI CTAG 3 cut(s) 33, 86, 132
SstI GAGCTC 1 cut(s) 131
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 3 cut(s) 198, 224, 230
TaqI TCGA 2 cut(s) 81, 242
Tru1I TTAA 2 cut(s) 218, 270
Tru9I TTAA 2 cut(s) 218, 270
TscAI CASTG 3 cut(s) 73, 229, 410
TseFI GTSAC 2 cut(s) 224, 395
Tsp45I GTSAC 2 cut(s) 224, 395
TspDTI ATGAA 2 cut(s) 62, 375
TspRI CASTG 3 cut(s) 73, 229, 410
XceI RCATGY 2 cut(s) 165, 470
XmiI GTMKAC 1 cut(s) 242
XspI CTAG 3 cut(s) 33, 86, 132
Zsp2I ATGCAT 2 cut(s) 95, 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.