pycom11g07240

Protein of unknown function (DUF674)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
5493334 .. 5494153
820 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07240.2

Sequence Viewer

Length: 321 bp
ATGATGAAGTCCATGGCAGAAAAATCTGAAAACAGAATTAGCTTGAAGGTCTTGGTGAACAATTTGACCAACAAAGTCATTTTCGCTGAGTGTGATAATGATTTCGTTGATGTTCTCTTTAGTTTCTTGACAGTCCCTATGGGAACTATTGTTAGGCTTTCCCATCATTTGGAATCCTTTGGAATTGGTTGCATTGGCGACTTATTTGGAAGTGTTGAGAGTCTTGATTTACAGCTTTTTCAAACTAAAGAATGTCGAGACATGTTGTTACGTCCCCGCAATGGAGCTGAAGATCTTTTGAGGAATCTGAAATTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.02

Weight (kDa)

6.08

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 169
AciI CCGC 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 169, 281
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 3 cut(s) 46, 242, 316
AluBI AGCT 3 cut(s) 42, 235, 287
AluI AGCT 3 cut(s) 42, 235, 287
Alw26I GTCTC 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 67
BccI CCATC 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 252
BglII AGATCT 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 281
Bse3DI GCAATG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 169, 281
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 78
BslFI GGGAC 2 cut(s) 119, 258
BslI CCNNNNNNNGG 2 cut(s) 169, 281
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 119, 258
Bsp143I GATC 1 cut(s) 292
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 1 cut(s) 277
BspCNI CTCAG 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 12
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 1 cut(s) 292
BstNSI RCATGY 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 12
CviAII CATG 2 cut(s) 13, 262
CviJI RGCY 4 cut(s) 42, 157, 235, 287
CviKI_1 RGCY 4 cut(s) 42, 157, 235, 287
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 2 cut(s) 16, 265
FaiI YATR 3 cut(s) 14, 140, 263
FaqI GGGAC 2 cut(s) 119, 258
FatI CATG 2 cut(s) 12, 261
FauI CCCGC 1 cut(s) 284
Hin1II CATG 2 cut(s) 16, 265
HinfI GANTC 3 cut(s) 173, 220, 304
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 28, 309
Hpy188III TCNNGA 3 cut(s) 127, 224, 257
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 2 cut(s) 16, 265
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 284
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 267
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 1 cut(s) 302
MflI RGATCY 1 cut(s) 292
MluCI AATT 4 cut(s) 36, 61, 183, 311
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 1 cut(s) 294
NcoI CCATGG 1 cut(s) 12
NdeII GATC 1 cut(s) 292
NlaIII CATG 2 cut(s) 16, 265
NspI RCATGY 1 cut(s) 265
PciI ACATGT 1 cut(s) 261
PfeI GAWTC 2 cut(s) 173, 304
PflMI CCANNNNNTGG 1 cut(s) 169
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 1 cut(s) 261
PsuI RGATCY 1 cut(s) 292
Sau3AI GATC 1 cut(s) 292
SchI GAGTC 1 cut(s) 229
SetI ASST 5 cut(s) 44, 51, 237, 274, 289
SgeI CNNG 8 cut(s) 25, 55, 64, 139, 236, 269, 274, 288
Sse9I AATT 4 cut(s) 36, 61, 183, 311
SsiI CCGC 1 cut(s) 277
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 256
TasI AATT 4 cut(s) 36, 61, 183, 311
TfiI GAWTC 2 cut(s) 173, 304
TspDTI ATGAA 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 169
XceI RCATGY 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.