RLG00000035938

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000148
Physical Location & Seq
Forward (+)
73704899 .. 73705907
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035938

Sequence Viewer

Length: 618 bp
ATGGCTGGTATCATAAGCTTGAAGGCGTTGGTGGACAAGGCGAGCAACAAAGTTATATTCGTAAAGGCTGCACATAATGATTTTGTTGATGTTCTCTTCAGTTTCTTGACAAAACCTATGGGAACGATTGTCAAGCTTACCAGTCCATCCTCCTTGGCTGAGCAAGATGGGGGCATCTTTGTAAAAAGATCAGCCAGACTCATGATCACTGATGATTTACATGTGATGTCCTCATTATCTGCAGCAACCTGTTCTTCATTAGCGAAGCTTGGTGTCATGAATGAGGATGGCAAGATTGAACAGTTGACTTTCAACATGGGATTTAATGGGGTTATGGAACTGCTTATGAGCTCTGTAGTATTAAAGACGCCTTTGACTGAAATTCTGCTGAGGCATAAACAACAGAAGCTGAGCAGTGAAAATCTCTGTGACCCAATATGTATGGGACTGCAAGTATCTGGAGACATGATGCATGAAAATGAAGAAAACATTTCTGTTAAGCTCACAGTTAGCAAATCGAAGGATATTGTTTGTTATGCAGAGGCAGGAGCGGATTTTGTTAATTTACTCTTCAGTTTCTTGACTGTTCCACTTGGGGTTATATCAAAACATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

206

Amino Acids

22.27

Weight (kDa)

6.2

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 5 - 49 1.2e-14 Protein of unknown function (DUF674)
DUF674 PF05056 53 - 204 1.9e-34 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 551
AciI CCGC 1 cut(s) 551
AcsI RAATTY 1 cut(s) 381
AcuI CTGAAG 2 cut(s) 82, 556
AcyI GRCGYC 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 3 cut(s) 22, 299, 313
AluBI AGCT 6 cut(s) 18, 136, 268, 351, 409, 502
AluI AGCT 6 cut(s) 18, 136, 268, 351, 409, 502
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 456
AlwNI CAGNNNCTG 1 cut(s) 409
ApeKI GCWGC 2 cut(s) 68, 242
ApoI RAATTY 1 cut(s) 381
BanII GRGCYC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 353
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 55, 254
BccI CCATC 3 cut(s) 154, 161, 281
BclI TGATCA 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 456
BfmI CTRYAG 2 cut(s) 240, 354
BisI GCNGC 2 cut(s) 69, 243
BlpI GCTNAGC 2 cut(s) 159, 410
BlsI GCNGC 2 cut(s) 70, 244
BmsI GCATC 2 cut(s) 183, 459
BpmI CTGGAG 1 cut(s) 480
Bpu10I CCTNAGC 1 cut(s) 389
Bpu1102I GCTNAGC 2 cut(s) 159, 410
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 2 cut(s) 146, 292
BseMII CTCAG 3 cut(s) 150, 380, 401
BseNI ACTGG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 55, 254
BsgI GTGCAG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 353
BslFI GGGAC 1 cut(s) 459
BsmAI GTCTC 1 cut(s) 456
BsmFI GGGAC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 2 cut(s) 188, 204
Bsp1720I GCTNAGC 2 cut(s) 159, 410
BspACI CCGC 1 cut(s) 551
BspCNI CTCAG 3 cut(s) 151, 381, 402
BspHI TCATGA 2 cut(s) 201, 276
BspMAI CTGCAG 1 cut(s) 244
BsrBI CCGCTC 1 cut(s) 551
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 188, 204
BssNI GRCGYC 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 3 cut(s) 303, 508, 586
Bst6I CTCTTC 2 cut(s) 101, 575
BstACI GRCGYC 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 3 cut(s) 159, 389, 410
BstF5I GGATG 2 cut(s) 146, 292
BstKTI GATC 2 cut(s) 191, 207
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 2 cut(s) 188, 204
BstNSI RCATGY 1 cut(s) 224
BstSFI CTRYAG 2 cut(s) 240, 354
BstV1I GCAGC 2 cut(s) 55, 254
BtsCI GGATG 2 cut(s) 146, 292
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 207, 421
Cac8I GCNNGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 409
CciI TCATGA 2 cut(s) 201, 276
CseI GACGC 1 cut(s) 376
CviAII CATG 6 cut(s) 202, 221, 277, 316, 466, 473
DdeI CTNAG 3 cut(s) 159, 389, 410
DpnI GATC 2 cut(s) 190, 206
DpnII GATC 2 cut(s) 188, 204
Eam1104I CTCTTC 2 cut(s) 101, 575
EarI CTCTTC 2 cut(s) 101, 575
Ecl136II GAGCTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 353
Eco53kI GAGCTC 1 cut(s) 351
Eco57I CTGAAG 2 cut(s) 82, 556
EcoICRI GAGCTC 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 474
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 6 cut(s) 205, 224, 280, 319, 469, 476
FaqI GGGAC 1 cut(s) 459
FatI CATG 6 cut(s) 201, 220, 276, 315, 465, 472
FauNDI CATATG 1 cut(s) 612
FbaI TGATCA 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 69, 243
FokI GGATG 2 cut(s) 133, 299
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 69, 243
GluI GCNGC 2 cut(s) 69, 243
GsuI CTGGAG 1 cut(s) 480
HgaI GACGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 6 cut(s) 205, 224, 280, 319, 469, 476
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HindIII AAGCTT 3 cut(s) 16, 134, 266
HinfI GANTC 1 cut(s) 198
Hpy166II GTNNAC 2 cut(s) 34, 306
Hpy188III TCNNGA 5 cut(s) 106, 202, 277, 459, 580
Hpy8I GTNNAC 2 cut(s) 34, 306
HpyAV CCTTC 2 cut(s) 16, 514
HpyCH4III ACNGT 3 cut(s) 303, 508, 586
HpyCH4V TGCA 5 cut(s) 71, 242, 451, 472, 539
HpyF3I CTNAG 3 cut(s) 159, 389, 410
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 6 cut(s) 205, 224, 280, 319, 469, 476
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 2 cut(s) 188, 204
LmnI GCTCC 1 cut(s) 548
LpnPI CCDG 5 cut(s) 154, 208, 262, 444, 531
Lsp1109I GCAGC 2 cut(s) 55, 254
LweI GCATC 2 cut(s) 183, 459
MaeIII GTNAC 1 cut(s) 428
MalI GATC 2 cut(s) 190, 206
MbiI CCGCTC 1 cut(s) 551
MboI GATC 2 cut(s) 188, 204
MboII GAAGA 4 cut(s) 88, 246, 494, 562
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 2 cut(s) 381, 562
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 5 cut(s) 160, 241, 277, 384, 535
Mph1103I ATGCAT 1 cut(s) 474
MseI TTAA 4 cut(s) 324, 362, 498, 561
MslI CAYNNNNRTG 1 cut(s) 477
NdeI CATATG 1 cut(s) 612
NdeII GATC 2 cut(s) 188, 204
NlaIII CATG 6 cut(s) 205, 224, 280, 319, 469, 476
NmuCI GTSAC 1 cut(s) 428
NsiI ATGCAT 1 cut(s) 474
NspI RCATGY 1 cut(s) 224
PagI TCATGA 2 cut(s) 201, 276
PciI ACATGT 1 cut(s) 220
PkrI GCNGC 2 cut(s) 70, 244
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PscI ACATGT 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 477
SacI GAGCTC 1 cut(s) 353
SaqAI TTAA 4 cut(s) 324, 362, 498, 561
SatI GCNGC 2 cut(s) 69, 243
Sau3AI GATC 2 cut(s) 188, 204
SchI GAGTC 1 cut(s) 192
SduI GDGCHC 1 cut(s) 353
SetI ASST 8 cut(s) 20, 118, 138, 251, 270, 353, 411, 504
SfaNI GCATC 2 cut(s) 183, 459
SfcI CTRYAG 2 cut(s) 240, 354
SmiMI CAYNNNNRTG 1 cut(s) 477
Sse9I AATT 2 cut(s) 381, 562
SsiI CCGC 1 cut(s) 551
SstI GAGCTC 1 cut(s) 353
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 3 cut(s) 303, 508, 586
TaqI TCGA 1 cut(s) 518
TasI AATT 2 cut(s) 381, 562
Tru1I TTAA 4 cut(s) 324, 362, 498, 561
Tru9I TTAA 4 cut(s) 324, 362, 498, 561
TscAI CASTG 2 cut(s) 214, 421
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 68, 242
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 4 cut(s) 246, 293, 489, 495
TspRI CASTG 2 cut(s) 214, 421
XapI RAATTY 1 cut(s) 381
XceI RCATGY 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.