RchiOBHm_Chr5g0067571

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000148
Physical Location & Seq
Forward (+)
73694640 .. 73696895
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34326

Sequence Viewer

Length: 1176 bp
ATGGCTCAGAAAGTACTAGCTGAGAAGAACATTAGCTTGAAGGCGTTGGTGGACAAGGGGAGTAAGAGAGTTATCATTGGAGAGGCGGATAATGATTTTATTGATGTTCTTTTCAGTTTCTTGACAATACCGACGGGAAAAATTGTCAGGCTTGCCTGGGACCATTCCACACCACTGGAAATAGGATGCATGAACAAGTTGTATCAGAGTATTGAGAAGCTTGATGTGCAGGTTTTCAGGTCTAATGCATGTAGAGACATGTTGTTACTTCCGCACACTGCAGCTAACTGTCATTGCAAGAACCTTAAATTGAAAATTATTGACGATGCTGAGCCAACACGGTTTAAGTGCGCTAATATTTATGCTTCTTCTCAGTCCTACTGGTTAAGTTATTATTCAACTGTTCCTTGCCCTTCCTGCTCAAATGCCATGAATTCTGAAGTATATTTTCCATCTTGGGGTGATTCTCAAGTTGGAGGGGTCTTTGCAAAAGAGCGAGCCAGGGTTATAATAACTGATGATTTTCAAGTGATTCCCCCATTCAGTGCAGCTAGCATTTCCTTGTTTACCAAGCTTGGAGCCATGAATAGCAATACCACTGAGGAGCTAACTTTCAGTATTGGAGTTGAGCAGATGCTGGATTCCCATTGGAAAGGATGTATTGATCAGTTGTGCAAGGGTGTCCTGGATGTTGATGAGCAATTTTTTAAGTCAAATTTCCACAAGGAATTGCCATGCAATCCCAAACTTGTTCCTGGGTTCAGCTATGAGAACAATCTTTTAGGAATTGAGGAGGTCGTGTACCATAAGTTTTCTGATCGTAAATTTACTGCTGATAGATCCATTATCCCTTCTATGTCCTTGAAGGCACTCAAAGTTAAATTTTTGGATCCCAAATCCCATGGTGATAAAGATAGAAATGCTAGGGGATTCTTAAAAGAAAAAGCAATTTTCACAGTAACTGACAATTTGGATGTAAGGCCAGTATATCCAATCTTCCAACCGTCTGTTCTTAATGATTTGAAGGTACATTTCACTGATATTGAGGATCGAACTGTGCATGTTGGCAAGAAGGAGGCTTTGCATCTTTTAGTGGCTTCTTTTGTTTCTGACTTTGTTCTAACCAATGCTTTCCTACGGAAGCCAAAGGAGCAGGCAATTAAGCAAGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

391

Amino Acids

44.11

Weight (kDa)

7.56

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 8 - 213 2.6e-54 Protein of unknown function (DUF674)
DUF674 PF05056 214 - 358 1.6e-20 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 220
AciI CCGC 2 cut(s) 86, 272
AclWI GGATC 4 cut(s) 834, 884, 897, 1056
AcsI RAATTY 4 cut(s) 433, 715, 824, 881
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 3 cut(s) 15, 803, 1029
AfiI CCNNNNNNNGG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 6 cut(s) 40, 313, 399, 527, 865, 1024
AjnI CCWGG 4 cut(s) 155, 500, 684, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 993, 1025
AluBI AGCT 8 cut(s) 20, 36, 220, 284, 551, 574, 607, 765
AluI AGCT 8 cut(s) 20, 36, 220, 284, 551, 574, 607, 765
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 4 cut(s) 834, 884, 897, 1056
AlwNI CAGNNNCTG 2 cut(s) 637, 962
AoxI GGCC 1 cut(s) 980
ApeKI GCWGC 2 cut(s) 281, 548
ApoI RAATTY 4 cut(s) 433, 715, 824, 881
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 473, 917
AsuNHI GCTAGC 1 cut(s) 551
AvaII GGWCC 1 cut(s) 160
BamHI GGATCC 1 cut(s) 889
BbvI GCAGC 2 cut(s) 293, 560
BccI CCATC 1 cut(s) 460
BciT130I CCWGG 4 cut(s) 157, 502, 686, 756
BclI TGATCA 1 cut(s) 664
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 3 cut(s) 17, 552, 924
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 2 cut(s) 282, 549
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 2 cut(s) 283, 550
BmcAI AGTACT 1 cut(s) 15
Bme1390I CCNGG 4 cut(s) 157, 502, 686, 756
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 3 cut(s) 161, 580, 891
BmrFI CCNGG 4 cut(s) 157, 502, 686, 756
BmsI GCATC 4 cut(s) 176, 316, 624, 1093
BmtI GCTAGC 1 cut(s) 555
Bpu1102I GCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 453
BsaJI CCNNGG 4 cut(s) 156, 501, 755, 901
BsaXI ACNNNNNCTCC 2 cut(s) 785, 815
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse1I ACTGG 3 cut(s) 180, 386, 983
Bse3DI GCAATG 1 cut(s) 292
BseBI CCWGG 4 cut(s) 157, 502, 686, 756
BseDI CCNNGG 4 cut(s) 156, 501, 755, 901
BseGI GGATG 4 cut(s) 191, 662, 694, 979
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 5 cut(s) 12, 20, 321, 386, 591
BseNI ACTGG 3 cut(s) 180, 386, 983
BseRI GAGGAG 2 cut(s) 617, 806
BseXI GCAGC 2 cut(s) 293, 560
BsgI GTGCAG 2 cut(s) 248, 567
BshFI GGCC 1 cut(s) 982
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 982
Bsp143I GATC 5 cut(s) 664, 817, 839, 889, 1048
Bsp1720I GCTNAGC 1 cut(s) 330
Bsp19I CCATGG 1 cut(s) 901
BspACI CCGC 2 cut(s) 86, 272
BspANI GGCC 1 cut(s) 982
BspCNI CTCAG 5 cut(s) 13, 19, 322, 385, 592
BspLI GGNNCC 3 cut(s) 161, 580, 891
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 555
BspPI GGATC 4 cut(s) 834, 884, 897, 1056
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 3 cut(s) 180, 386, 983
BssECI CCNNGG 4 cut(s) 156, 501, 755, 901
BssMI GATC 5 cut(s) 664, 817, 839, 889, 1048
BssT1I CCWWGG 1 cut(s) 901
Bst2UI CCWGG 4 cut(s) 157, 502, 686, 756
Bst4CI ACNGT 6 cut(s) 290, 342, 403, 958, 1005, 1057
BstC8I GCNNGC 4 cut(s) 153, 498, 553, 1155
BstDEI CTNAG 5 cut(s) 6, 21, 330, 372, 600
BstDSI CCRYGG 1 cut(s) 901
BstF5I GGATG 4 cut(s) 191, 662, 694, 979
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 5 cut(s) 667, 820, 842, 892, 1051
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 5 cut(s) 664, 817, 839, 889, 1048
BstMWI GCNNNNNNNGC 3 cut(s) 226, 417, 1150
BstNI CCWGG 4 cut(s) 157, 502, 686, 756
BstNSI RCATGY 3 cut(s) 252, 262, 1064
BstSCI CCNGG 4 cut(s) 155, 500, 684, 754
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 293, 560
BstX2I RGATCY 2 cut(s) 839, 889
BstXI CCANNNNNNTGG 1 cut(s) 175
BstYI RGATCY 2 cut(s) 839, 889
BsuRI GGCC 1 cut(s) 982
BtgI CCRYGG 1 cut(s) 901
BtsCI GGATG 4 cut(s) 191, 662, 694, 979
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 5 cut(s) 173, 276, 550, 597, 1035
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 4 cut(s) 153, 498, 553, 1155
CaiI CAGNNNCTG 2 cut(s) 637, 962
CfoI GCGC 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 3 cut(s) 14, 802, 1028
CviAII CATG 8 cut(s) 190, 249, 259, 430, 583, 735, 902, 1061
CviQI GTAC 3 cut(s) 14, 802, 1028
DdeI CTNAG 5 cut(s) 6, 21, 330, 372, 600
DpnI GATC 5 cut(s) 666, 819, 841, 891, 1050
DpnII GATC 5 cut(s) 664, 817, 839, 889, 1048
EciI GGCGGA 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 901
Eco47I GGWCC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 459
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 4 cut(s) 155, 500, 684, 754
EcoT14I CCWWGG 1 cut(s) 901
EcoT22I ATGCAT 2 cut(s) 191, 250
ErhI CCWWGG 1 cut(s) 901
FaeI CATG 8 cut(s) 193, 252, 262, 433, 586, 738, 905, 1064
FaqI GGGAC 1 cut(s) 173
FatI CATG 8 cut(s) 189, 248, 258, 429, 582, 734, 901, 1060
FbaI TGATCA 1 cut(s) 664
Fnu4HI GCNGC 2 cut(s) 282, 549
FokI GGATG 4 cut(s) 198, 669, 701, 986
Fsp4HI GCNGC 2 cut(s) 282, 549
FspBI CTAG 3 cut(s) 17, 552, 924
GlaI GCGC 1 cut(s) 352
GluI GCNGC 2 cut(s) 282, 549
HaeIII GGCC 1 cut(s) 982
HhaI GCGC 1 cut(s) 353
Hin1II CATG 8 cut(s) 193, 252, 262, 433, 586, 738, 905, 1064
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HindIII AAGCTT 2 cut(s) 218, 572
HinfI GANTC 4 cut(s) 464, 532, 641, 930
HphI GGTGA 2 cut(s) 473, 917
Hpy166II GTNNAC 3 cut(s) 52, 567, 802
Hpy188I TCNGA 5 cut(s) 9, 207, 439, 817, 1111
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 3 cut(s) 52, 567, 802
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 6 cut(s) 34, 423, 859, 861, 1018, 1066
HpyCH4III ACNGT 6 cut(s) 290, 342, 403, 958, 1005, 1057
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 417, 1150
HpyF3I CTNAG 5 cut(s) 6, 21, 330, 372, 600
Hsp92II CATG 8 cut(s) 193, 252, 262, 433, 586, 738, 905, 1064
HspAI GCGC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 5 cut(s) 664, 817, 839, 889, 1048
LmnI GCTCC 3 cut(s) 578, 604, 1150
Lsp1109I GCAGC 2 cut(s) 293, 560
LweI GCATC 4 cut(s) 176, 316, 624, 1093
MaeI CTAG 3 cut(s) 17, 552, 924
MaeIII GTNAC 2 cut(s) 264, 958
MalI GATC 5 cut(s) 666, 819, 841, 891, 1050
MboI GATC 5 cut(s) 664, 817, 839, 889, 1048
MboII GAAGA 3 cut(s) 37, 360, 988
MflI RGATCY 2 cut(s) 839, 889
MmeI TCCRAC 2 cut(s) 454, 1024
MnlI CCTC 7 cut(s) 76, 470, 595, 784, 787, 1039, 1069
Mph1103I ATGCAT 2 cut(s) 191, 250
MseI TTAA 8 cut(s) 306, 345, 386, 708, 879, 935, 1014, 1161
MspR9I CCNGG 4 cut(s) 157, 502, 686, 756
MvaI CCWGG 4 cut(s) 157, 502, 686, 756
MwoI GCNNNNNNNGC 3 cut(s) 226, 417, 1150
NcoI CCATGG 1 cut(s) 901
NdeII GATC 5 cut(s) 664, 817, 839, 889, 1048
NheI GCTAGC 1 cut(s) 551
NlaIII CATG 8 cut(s) 193, 252, 262, 433, 586, 738, 905, 1064
NlaIV GGNNCC 3 cut(s) 161, 580, 891
NsiI ATGCAT 2 cut(s) 191, 250
NspI RCATGY 3 cut(s) 252, 262, 1064
PciI ACATGT 1 cut(s) 258
PfeI GAWTC 4 cut(s) 464, 532, 641, 930
PfoI TCCNGGA 1 cut(s) 684
PkrI GCNGC 2 cut(s) 283, 550
PscI ACATGT 1 cut(s) 258
PsiI TTATAA 1 cut(s) 509
Psp6I CCWGG 4 cut(s) 155, 500, 684, 754
PspGI CCWGG 4 cut(s) 155, 500, 684, 754
PspN4I GGNNCC 3 cut(s) 161, 580, 891
PspPI GGNCC 1 cut(s) 160
PstI CTGCAG 1 cut(s) 283
PstNI CAGNNNCTG 2 cut(s) 637, 962
PsuI RGATCY 2 cut(s) 839, 889
RsaI GTAC 3 cut(s) 15, 803, 1029
RsaNI GTAC 3 cut(s) 14, 802, 1028
SaqAI TTAA 8 cut(s) 306, 345, 386, 708, 879, 935, 1014, 1161
SatI GCNGC 2 cut(s) 282, 549
Sau3AI GATC 5 cut(s) 664, 817, 839, 889, 1048
Sau96I GGNCC 1 cut(s) 160
ScaI AGTACT 1 cut(s) 15
ScrFI CCNGG 4 cut(s) 157, 502, 686, 756
SfaNI GCATC 4 cut(s) 176, 316, 624, 1093
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
SsiI CCGC 2 cut(s) 86, 272
SspI AATATT 1 cut(s) 358
SspMI CTAG 3 cut(s) 17, 552, 924
StyD4I CCNGG 4 cut(s) 155, 500, 684, 754
StyI CCWWGG 1 cut(s) 901
TaaI ACNGT 6 cut(s) 290, 342, 403, 958, 1005, 1057
TaqI TCGA 1 cut(s) 1051
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 4 cut(s) 464, 532, 641, 930
Tru1I TTAA 8 cut(s) 306, 345, 386, 708, 879, 935, 1014, 1161
Tru9I TTAA 8 cut(s) 306, 345, 386, 708, 879, 935, 1014, 1161
TscAI CASTG 5 cut(s) 180, 283, 550, 604, 1042
TseI GCWGC 2 cut(s) 281, 548
TspDTI ATGAA 3 cut(s) 206, 446, 599
TspGWI ACGGA 1 cut(s) 1153
TspRI CASTG 5 cut(s) 180, 283, 550, 604, 1042
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 4 cut(s) 433, 715, 824, 881
XceI RCATGY 3 cut(s) 252, 262, 1064
XspI CTAG 3 cut(s) 17, 552, 924
ZrmI AGTACT 1 cut(s) 15
Zsp2I ATGCAT 2 cut(s) 191, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.