Rmu_sc0000230.1_g000001

Protein of unknown function (DUF674)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000230.1
Physical Location & Seq
Forward (+)
1 .. 589
589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000230.1_g000001.1.cds

Sequence Viewer

Length: 415 bp
ctattggaacaatcttttagggattgaggaggcagaatactatatgttttctgatcgtaagttgacttctgatagatccattattccttctaaccagtcctctcaggcaattaaagttaaatttttggaccccaaatcccacggtgataaagatacaagtgctcggggattcttaaaagaaccagcaattttcatagtagctgacaatttggatataaggcgagtatctccaatctttcaactgtctattcttaatgatttgaaggtacatttcactgatattgaggatcgaactgtgcatgttggcaagaacgaggctttgcgtcttttggtggcttctgttgtttctgactcagttctaaccaatgctttcctacgaaagccacaggagccatcaattaagcgagagcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

15.62

Weight (kDa)

7.04

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 70, 295
AcsI RAATTY 1 cut(s) 120
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 2 cut(s) 240, 263
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw21I GWGCWC 1 cut(s) 164
AlwI GGATC 2 cut(s) 70, 295
Ama87I CYCGRG 1 cut(s) 163
ApoI RAATTY 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 156
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 128
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
Bbv12I GWGCWC 1 cut(s) 164
BccI CCATC 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 130, 391
BsaJI CCNNGG 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 140
BseMII CTCAG 2 cut(s) 117, 367
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 3 cut(s) 53, 75, 287
BspCNI CTCAG 2 cut(s) 116, 366
BspLI GGNNCC 2 cut(s) 130, 391
BspPI GGATC 2 cut(s) 70, 295
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 3 cut(s) 53, 75, 287
Bst4CI ACNGT 3 cut(s) 144, 244, 296
BstDEI CTNAG 2 cut(s) 103, 353
BstDSI CCRYGG 1 cut(s) 140
BstKTI GATC 3 cut(s) 56, 78, 290
BstMBI GATC 3 cut(s) 53, 75, 287
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 128
CseI GACGC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 267
CviAII CATG 1 cut(s) 300
CviJI RGCY 5 cut(s) 201, 318, 336, 383, 392
CviKI_1 RGCY 5 cut(s) 201, 318, 336, 383, 392
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 2 cut(s) 103, 353
DpnI GATC 3 cut(s) 55, 77, 289
DpnII GATC 3 cut(s) 53, 75, 287
Eco47I GGWCC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 163
FaeI CATG 1 cut(s) 303
FaiI YATR 5 cut(s) 43, 45, 195, 216, 301
FatI CATG 1 cut(s) 299
HgaI GACGC 1 cut(s) 312
Hin1II CATG 1 cut(s) 303
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 2 cut(s) 169, 351
HphI GGTGA 1 cut(s) 156
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 3 cut(s) 53, 71, 350
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 97, 257
HpyCH4III ACNGT 3 cut(s) 144, 244, 296
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 2 cut(s) 103, 353
Hsp92II CATG 1 cut(s) 303
Kzo9I GATC 3 cut(s) 53, 75, 287
LmnI GCTCC 1 cut(s) 389
LpnPI CCDG 4 cut(s) 90, 108, 196, 372
MalI GATC 3 cut(s) 55, 77, 289
MboI GATC 3 cut(s) 53, 75, 287
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 5 cut(s) 109, 120, 187, 206, 397
MlyI GAGTC 1 cut(s) 345
MnlI CCTC 5 cut(s) 20, 23, 110, 278, 308
MseI TTAA 5 cut(s) 112, 118, 174, 253, 400
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 3 cut(s) 53, 75, 287
NlaIII CATG 1 cut(s) 303
NlaIV GGNNCC 2 cut(s) 130, 391
NspI RCATGY 1 cut(s) 303
PfeI GAWTC 1 cut(s) 169
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 130, 391
PspPI GGNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 75
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 5 cut(s) 112, 118, 174, 253, 400
Sau3AI GATC 3 cut(s) 53, 75, 287
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 345
SduI GDGCHC 1 cut(s) 164
SetI ASST 2 cut(s) 203, 268
SinI GGWCC 1 cut(s) 128
Sse9I AATT 5 cut(s) 109, 120, 187, 206, 397
TaaI ACNGT 3 cut(s) 144, 244, 296
TaqI TCGA 1 cut(s) 290
TasI AATT 5 cut(s) 109, 120, 187, 206, 397
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 5 cut(s) 112, 118, 174, 253, 400
Tru9I TTAA 5 cut(s) 112, 118, 174, 253, 400
TscAI CASTG 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 1 cut(s) 120
XceI RCATGY 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.