AT3G09110

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000148
Physical Location & Seq
Reverse (-)
2794165 .. 2795991
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09110.1

Sequence Viewer

Length: 1032 bp
ATGGCTAAGAGCTTTGAGAAGCCGAAGTTTAGCCTAAGACTTCTCATTGATGAGGAGAAAAACAGAGTTATTTTGGCTGAAGCTGGGAAGGATTTTGTTGATGTGCTCTGTAGTCTTTTGACTCTTCCTATGGGTACCATTGTCAGGTTGCTCGAGAAGCATCAGAATCCGCAGTCTTCAGTCGTTGGTTGTTTACACAATCTTTACAAAAGTGTTGCAGACATGGACGTTGATAATTTCGAGTCTCAAGCTTGTAAGCATTTCTTGCTGCATCCTCGGAGTGCGAAGGGGAGTCATGGCAGAGATCTAAAGCTCAACATTGATGACACCGAGGCGACCAAGTTCTTTGTCTGCCCAAATTTTGTTTCTACTGAAGCATGCCGTAAGTTATTCAGCAATGTTAGTACCATGAAGTGTCGTTGTGGAAGCTCTATGCACCGTGAGATTCCGGTTGAAGAACAGCAAGCTGATGGAGTATTTCCCAGCTGCAGAACATCATTTGTTATTACGGATGATCTCAAAGTGGCATTGAACTCTATGGGTCTTGTTTTGAATGTCCTCAATGATTTTGGTTACTCTGGTTTTGATAAGCTGCAAGAAATGCTTATTGATGTTGGTTTTGAAGAGATTCTAACTTTGCTAGGGTGTTTGTTCACTTCGGAAGCTCCATTGACAGACACCTTCCTGAGGAAACATTGCATGTCAAGGAAACGTAAAATGTTGACACCACTTGTACAAGAAAGCAGTGTTGCAGGAGCTGCAGACAATCTCTTAACTTTGAAAGTTTATGTTAGAAAGACAGACAGGGCTGTTCTCTATGCTGAGTGCAGAGAAGAATTCGTTGATTTTCTTTTCACTTTTCTTGCCATCCCGATTGAGTTTGCTTGGGAACTTTCTATTGACATTGGTAATATGGGCTGTGTTGGTAATCTGTGCAGAAGTGTGAAAGATTTGAGCTTTGAGAAGCAGAAAGCAGCCACAGTTTCTCAATGCATGCTTCCTTATTTCTACTGGAAGGGCACAACCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

343

Amino Acids

38.59

Weight (kDa)

6.2

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 6 - 339 2.6e-140 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 134
AciI CCGC 1 cut(s) 170
AcsI RAATTY 2 cut(s) 358, 836
AcuI CTGAAG 3 cut(s) 99, 162, 393
AfaI GTAC 3 cut(s) 136, 406, 735
AfiI CCNNNNNNNGG 2 cut(s) 144, 687
AgsI TTSAA 5 cut(s) 455, 532, 553, 623, 781
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 249
AlwNI CAGNNNCTG 1 cut(s) 758
Ama87I CYCGRG 1 cut(s) 152
ApeKI GCWGC 5 cut(s) 268, 486, 592, 758, 974
ApoI RAATTY 2 cut(s) 358, 836
Asp700I GAANNNNTTC 1 cut(s) 627
Asp718I GGTACC 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 152
AxyI CCTNAGG 1 cut(s) 686
BaeGI GKGCMC 1 cut(s) 1022
BaeI ACNNNNGTAYC 2 cut(s) 126, 159
BanI GGYRCC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 5 cut(s) 255, 473, 579, 745, 986
BccI CCATC 2 cut(s) 464, 875
BceAI ACGGC 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 641
BfmI CTRYAG 3 cut(s) 109, 487, 759
BglII AGATCT 1 cut(s) 304
BisI GCNGC 5 cut(s) 269, 487, 593, 759, 975
BlsI GCNGC 5 cut(s) 270, 488, 594, 760, 976
BmeT110I CYCGRG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 136
BmsI GCATC 2 cut(s) 169, 280
BpiI GAAGAC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 275, 330
BsaWI WCCGGW 1 cut(s) 448
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 687
Bse1I ACTGG 1 cut(s) 1016
Bse21I CCTNAGG 1 cut(s) 686
Bse3DI GCAATG 2 cut(s) 403, 694
BseDI CCNNGG 2 cut(s) 275, 330
BseGI GGATG 3 cut(s) 271, 517, 867
BseLI CCNNNNNNNGG 2 cut(s) 144, 687
BseMI GCAATG 2 cut(s) 403, 694
BseMII CTCAG 2 cut(s) 677, 813
BseNI ACTGG 1 cut(s) 1016
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 1022
BseXI GCAGC 5 cut(s) 255, 473, 579, 745, 986
BseYI CCCAGC 2 cut(s) 83, 482
BsgI GTGCAG 2 cut(s) 847, 955
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 144, 687
BsmAI GTCTC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 108, 1022
Bsp1407I TGTACA 1 cut(s) 733
Bsp143I GATC 2 cut(s) 304, 514
BspACI CCGC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 678, 814
BspLI GGNNCC 1 cut(s) 136
BspMAI CTGCAG 2 cut(s) 491, 763
BspT107I GGYRCC 1 cut(s) 134
BsrDI GCAATG 2 cut(s) 403, 694
BsrGI TGTACA 1 cut(s) 733
BsrI ACTGG 1 cut(s) 1016
BssECI CCNNGG 2 cut(s) 275, 330
BssMI GATC 2 cut(s) 304, 514
Bst4CI ACNGT 2 cut(s) 440, 982
Bst6I CTCTTC 2 cut(s) 129, 618
BstAPI GCANNNNNTGC 3 cut(s) 265, 601, 758
BstAUI TGTACA 1 cut(s) 733
BstC8I GCNNGC 3 cut(s) 379, 465, 995
BstDEI CTNAG 4 cut(s) 6, 35, 686, 822
BstENI CCTNNNNNAGG 1 cut(s) 685
BstF5I GGATG 3 cut(s) 271, 517, 867
BstKTI GATC 2 cut(s) 307, 517
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 2 cut(s) 304, 514
BstMWI GCNNNNNNNGC 4 cut(s) 157, 265, 601, 758
BstNSI RCATGY 3 cut(s) 381, 703, 997
BstSFI CTRYAG 3 cut(s) 109, 487, 759
BstSLI GKGCMC 1 cut(s) 1022
BstV1I GCAGC 5 cut(s) 255, 473, 579, 745, 986
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
Bsu36I CCTNAGG 1 cut(s) 686
BtsCI GGATG 3 cut(s) 271, 517, 867
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 1 cut(s) 751
Cac8I GCNNGC 3 cut(s) 379, 465, 995
CaiI CAGNNNCTG 1 cut(s) 758
Csp6I GTAC 3 cut(s) 135, 405, 734
CviAII CATG 6 cut(s) 223, 296, 378, 409, 700, 994
CviQI GTAC 3 cut(s) 135, 405, 734
DdeI CTNAG 4 cut(s) 6, 35, 686, 822
DpnI GATC 2 cut(s) 306, 516
DpnII GATC 2 cut(s) 304, 514
Eam1104I CTCTTC 2 cut(s) 129, 618
EarI CTCTTC 2 cut(s) 129, 618
Eco57I CTGAAG 3 cut(s) 99, 162, 393
Eco81I CCTNAGG 1 cut(s) 686
Eco88I CYCGRG 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 685
EcoRI GAATTC 1 cut(s) 836
EcoT22I ATGCAT 1 cut(s) 995
FaeI CATG 6 cut(s) 226, 299, 381, 412, 703, 997
FalI AAGNNNNNCTT 4 cut(s) 248, 280, 588, 620
FatI CATG 6 cut(s) 222, 295, 377, 408, 699, 993
Fnu4HI GCNGC 5 cut(s) 269, 487, 593, 759, 975
FokI GGATG 3 cut(s) 258, 524, 854
Fsp4HI GCNGC 5 cut(s) 269, 487, 593, 759, 975
FspBI CTAG 1 cut(s) 641
GluI GCNGC 5 cut(s) 269, 487, 593, 759, 975
GsaI CCCAGC 2 cut(s) 87, 486
HapII CCGG 1 cut(s) 449
Hin1II CATG 6 cut(s) 226, 299, 381, 412, 703, 997
HincII GTYRAC 1 cut(s) 723
HindII GTYRAC 1 cut(s) 723
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 6 cut(s) 121, 166, 242, 292, 445, 628
HpaII CCGG 1 cut(s) 449
Hpy166II GTNNAC 3 cut(s) 194, 654, 723
Hpy188I TCNGA 3 cut(s) 165, 279, 661
Hpy188III TCNNGA 4 cut(s) 154, 685, 871, 1029
Hpy8I GTNNAC 3 cut(s) 194, 654, 723
HpyAV CCTTC 4 cut(s) 82, 280, 691, 1009
HpyCH4III ACNGT 2 cut(s) 440, 982
HpyCH4IV ACGT 2 cut(s) 228, 712
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 265, 601, 758
HpyF3I CTNAG 4 cut(s) 6, 35, 686, 822
HpySE526I ACGT 2 cut(s) 228, 712
Hsp92II CATG 6 cut(s) 226, 299, 381, 412, 703, 997
KpnI GGTACC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 304, 514
LmnI GCTCC 2 cut(s) 670, 755
LpnPI CCDG 9 cut(s) 69, 130, 462, 496, 564, 698, 738, 790, 997
Lsp1109I GCAGC 5 cut(s) 255, 473, 579, 745, 986
LweI GCATC 2 cut(s) 169, 280
MaeI CTAG 1 cut(s) 641
MaeII ACGT 2 cut(s) 228, 712
MaeIII GTNAC 1 cut(s) 572
MalI GATC 2 cut(s) 306, 516
MboI GATC 2 cut(s) 304, 514
MboII GAAGA 5 cut(s) 116, 168, 467, 635, 845
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 108, 1022
MluCI AATT 3 cut(s) 235, 358, 836
MlyI GAGTC 3 cut(s) 115, 251, 301
MnlI CCTC 5 cut(s) 46, 285, 325, 569, 681
Mph1103I ATGCAT 1 cut(s) 995
MroXI GAANNNNTTC 1 cut(s) 627
MseI TTAA 1 cut(s) 773
MspA1I CMGCKG 1 cut(s) 486
MspI CCGG 1 cut(s) 449
MwoI GCNNNNNNNGC 4 cut(s) 157, 265, 601, 758
NdeII GATC 2 cut(s) 304, 514
NlaIII CATG 6 cut(s) 226, 299, 381, 412, 703, 997
NlaIV GGNNCC 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 995
NspI RCATGY 3 cut(s) 381, 703, 997
PaeI GCATGC 2 cut(s) 381, 997
PaeR7I CTCGAG 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 3 cut(s) 166, 445, 628
PkrI GCNGC 5 cut(s) 270, 488, 594, 760, 976
PleI GAGTC 3 cut(s) 115, 250, 300
PpsI GAGTC 3 cut(s) 115, 250, 300
PspFI CCCAGC 2 cut(s) 83, 482
PspN4I GGNNCC 1 cut(s) 136
PstI CTGCAG 2 cut(s) 491, 763
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 486
RsaI GTAC 3 cut(s) 136, 406, 735
RsaNI GTAC 3 cut(s) 135, 405, 734
SaqAI TTAA 1 cut(s) 773
SatI GCNGC 5 cut(s) 269, 487, 593, 759, 975
Sau3AI GATC 2 cut(s) 304, 514
SchI GAGTC 3 cut(s) 115, 251, 301
SduI GDGCHC 2 cut(s) 108, 1022
SfaNI GCATC 2 cut(s) 169, 280
SfcI CTRYAG 3 cut(s) 109, 487, 759
Sfr274I CTCGAG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 152, 246
SmoI CTYRAG 2 cut(s) 152, 246
SphI GCATGC 2 cut(s) 381, 997
Sse9I AATT 3 cut(s) 235, 358, 836
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 641
TaaI ACNGT 2 cut(s) 440, 982
TaiI ACGT 2 cut(s) 231, 715
TaqI TCGA 2 cut(s) 153, 240
TasI AATT 3 cut(s) 235, 358, 836
TatI WGTACW 1 cut(s) 733
TfiI GAWTC 3 cut(s) 166, 445, 628
Tru1I TTAA 1 cut(s) 773
Tru9I TTAA 1 cut(s) 773
TscAI CASTG 1 cut(s) 751
TseI GCWGC 5 cut(s) 268, 486, 592, 758, 974
TspDTI ATGAA 1 cut(s) 425
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 1 cut(s) 751
XagI CCTNNNNNAGG 1 cut(s) 685
XapI RAATTY 2 cut(s) 358, 836
XceI RCATGY 3 cut(s) 381, 703, 997
XhoI CTCGAG 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 1 cut(s) 641
Zsp2I ATGCAT 1 cut(s) 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.