Rmu_sc0002253.1_g000039

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002253.1
OG0000148
Physical Location & Seq
Reverse (-)
157645 .. 158594
950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002253.1_g000039.1.cds

Sequence Viewer

Length: 813 bp
atggctcagaaagtaccagctgagaagaacattagcttgaaggcgttggtggacaaggggagtaagagagttatcattggagaggcggataatgattttattgatgttcttttcaatttcttgacaataccgacgggaaaaattgtcaggcttgcctgggaccattccacaccactggaaataggatgcatgaacaagttgtatcagagtattgagaagcttgatgtgcaggttttcaggtctaatgcatgtagagacatgttgttacttccgcacactgcagctaactgtcattgcaagaaccttaaattgaaaattattgacgatgctgagccaacacggtttaagtgcgctaatatttatgcttcttctcagtcctactggttaagttattatttaactgttccttgcccttcctgctcaaatgccatgaattctgaagtatatctttcagagggtgattctcaagttggaggggtctttgcaaaagagcgagccagggttataataactgatgattttcaagtgattcccccattcagtgcagctagcatttccttgtttaccaagcttggagccatgaatagcaataccactgaggagctaactttcagttttggagttgagcagaagcctaatcttgtaccaaaattaggttgtgtgaatttcagtcaaggaatatgtattgaatctcaaatgtcaggggcctcgatagatgaggaaaaagcaatgttttcaaaggcgttgccgaggcgcgcccggggcgcgctccggtgtggggcgaccggaaatcgcctcgccggaccaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

270

Amino Acids

29.64

Weight (kDa)

8.48

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 506
Acc36I ACCTGC 1 cut(s) 220
AccII CGCG 2 cut(s) 756, 767
AciI CCGC 2 cut(s) 86, 272
AcsI RAATTY 2 cut(s) 433, 664
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 2 cut(s) 15, 645
AfiI CCNNNNNNNGG 2 cut(s) 653, 778
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 6 cut(s) 40, 115, 313, 524, 689, 738
AjnI CCWGG 2 cut(s) 155, 497
AluBI AGCT 7 cut(s) 20, 36, 220, 284, 548, 571, 604
AluI AGCT 7 cut(s) 20, 36, 220, 284, 548, 571, 604
Alw26I GTCTC 1 cut(s) 249
Ama87I CYCGRG 1 cut(s) 759
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 2 cut(s) 281, 545
ApoI RAATTY 2 cut(s) 433, 664
AscI GGCGCGCC 1 cut(s) 754
AspLEI GCGC 5 cut(s) 353, 756, 758, 767, 769
AspS9I GGNCC 3 cut(s) 160, 705, 803
AsuC2I CCSGG 2 cut(s) 760, 761
AsuHPI GGTGA 1 cut(s) 470
AsuNHI GCTAGC 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 759
AvaII GGWCC 2 cut(s) 160, 803
BbvI GCAGC 2 cut(s) 293, 557
BciT130I CCWGG 2 cut(s) 157, 499
BcnI CCSGG 2 cut(s) 760, 761
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 2 cut(s) 282, 546
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 2 cut(s) 283, 547
Bme1390I CCNGG 4 cut(s) 157, 499, 760, 761
Bme18I GGWCC 2 cut(s) 160, 803
BmeT110I CYCGRG 1 cut(s) 759
BmgT120I GGNCC 3 cut(s) 160, 705, 803
BmiI GGNNCC 3 cut(s) 161, 577, 706
BmrFI CCNGG 4 cut(s) 157, 499, 760, 761
BmsI GCATC 2 cut(s) 176, 316
BmtI GCTAGC 1 cut(s) 552
Bpu1102I GCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 450
BpuMI CCSGG 2 cut(s) 760, 761
BsaJI CCNNGG 5 cut(s) 156, 498, 749, 759, 760
BsaWI WCCGGW 2 cut(s) 771, 785
Bsc4I CCNNNNNNNGG 2 cut(s) 653, 778
Bse1I ACTGG 2 cut(s) 180, 386
Bse3DI GCAATG 2 cut(s) 292, 735
BseBI CCWGG 2 cut(s) 157, 499
BseDI CCNNGG 5 cut(s) 156, 498, 749, 759, 760
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 2 cut(s) 653, 778
BseMI GCAATG 2 cut(s) 292, 735
BseMII CTCAG 5 cut(s) 12, 20, 321, 386, 588
BseNI ACTGG 2 cut(s) 180, 386
BsePI GCGCGC 2 cut(s) 754, 765
BseRI GAGGAG 1 cut(s) 614
BseXI GCAGC 2 cut(s) 293, 557
BsgI GTGCAG 2 cut(s) 248, 564
Bsh1236I CGCG 2 cut(s) 756, 767
Bsh1285I CGRYCG 1 cut(s) 786
BshFI GGCC 1 cut(s) 707
BsiEI CGRYCG 1 cut(s) 786
BsiHKCI CYCGRG 1 cut(s) 759
BsiSI CCGG 4 cut(s) 760, 772, 786, 801
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 653, 778
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 707
BsoBI CYCGRG 1 cut(s) 759
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 2 cut(s) 86, 272
BspANI GGCC 1 cut(s) 707
BspCNI CTCAG 5 cut(s) 13, 19, 322, 385, 589
BspFNI CGCG 2 cut(s) 756, 767
BspLI GGNNCC 3 cut(s) 161, 577, 706
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 552
BsrDI GCAATG 2 cut(s) 292, 735
BsrI ACTGG 2 cut(s) 180, 386
BssECI CCNNGG 5 cut(s) 156, 498, 749, 759, 760
BssHII GCGCGC 2 cut(s) 754, 765
Bst2UI CCWGG 2 cut(s) 157, 499
Bst4CI ACNGT 3 cut(s) 290, 342, 403
BstC8I GCNNGC 5 cut(s) 153, 495, 550, 756, 767
BstDEI CTNAG 5 cut(s) 6, 21, 330, 372, 597
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 2 cut(s) 756, 767
BstHHI GCGC 5 cut(s) 353, 756, 758, 767, 769
BstMAI GTCTC 1 cut(s) 249
BstMCI CGRYCG 1 cut(s) 786
BstMWI GCNNNNNNNGC 4 cut(s) 226, 417, 762, 764
BstNI CCWGG 2 cut(s) 157, 499
BstNSI RCATGY 2 cut(s) 252, 262
BstSCI CCNGG 4 cut(s) 155, 497, 758, 759
BstSFI CTRYAG 1 cut(s) 279
BstUI CGCG 2 cut(s) 756, 767
BstV1I GCAGC 2 cut(s) 293, 557
BstXI CCANNNNNNTGG 1 cut(s) 175
BsuRI GGCC 1 cut(s) 707
BtsCI GGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 4 cut(s) 173, 276, 547, 594
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 5 cut(s) 153, 495, 550, 756, 767
CfoI GCGC 5 cut(s) 353, 756, 758, 767, 769
Cfr13I GGNCC 3 cut(s) 160, 705, 803
Cfr9I CCCGGG 1 cut(s) 759
Csp6I GTAC 2 cut(s) 14, 644
CviAII CATG 5 cut(s) 190, 249, 259, 430, 580
CviQI GTAC 2 cut(s) 14, 644
DdeI CTNAG 5 cut(s) 6, 21, 330, 372, 597
EciI GGCGGA 1 cut(s) 101
Eco47I GGWCC 2 cut(s) 160, 803
Eco57I CTGAAG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 759
EcoO109I RGGNCCY 1 cut(s) 705
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 155, 497
EcoT22I ATGCAT 2 cut(s) 191, 250
FaeI CATG 5 cut(s) 193, 252, 262, 433, 583
FaiI YATR 9 cut(s) 191, 250, 260, 363, 431, 445, 506, 581, 682
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 173
FatI CATG 5 cut(s) 189, 248, 258, 429, 579
Fnu4HI GCNGC 2 cut(s) 282, 546
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 282, 546
FspBI CTAG 1 cut(s) 549
GlaI GCGC 5 cut(s) 352, 755, 757, 766, 768
GluI GCNGC 2 cut(s) 282, 546
HaeIII GGCC 1 cut(s) 707
HapII CCGG 4 cut(s) 760, 772, 786, 801
HhaI GCGC 5 cut(s) 353, 756, 758, 767, 769
Hin1II CATG 5 cut(s) 193, 252, 262, 433, 583
Hin6I GCGC 5 cut(s) 351, 754, 756, 765, 767
HinP1I GCGC 5 cut(s) 351, 754, 756, 765, 767
HindIII AAGCTT 2 cut(s) 218, 569
HinfI GANTC 3 cut(s) 461, 529, 689
HpaII CCGG 4 cut(s) 760, 772, 786, 801
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 2 cut(s) 52, 564
Hpy188I TCNGA 4 cut(s) 9, 207, 439, 454
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 2 cut(s) 52, 564
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 34, 423
HpyCH4III ACNGT 3 cut(s) 290, 342, 403
HpyCH4V TGCA 7 cut(s) 189, 229, 248, 281, 297, 485, 545
HpyF10VI GCNNNNNNNGC 4 cut(s) 226, 417, 762, 764
HpyF3I CTNAG 5 cut(s) 6, 21, 330, 372, 597
Hsp92II CATG 5 cut(s) 193, 252, 262, 433, 583
HspAI GCGC 5 cut(s) 351, 754, 756, 765, 767
LmnI GCTCC 3 cut(s) 575, 601, 774
Lsp1109I GCAGC 2 cut(s) 293, 557
LweI GCATC 2 cut(s) 176, 316
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 264
MboII GAAGA 2 cut(s) 37, 360
MluCI AATT 7 cut(s) 115, 141, 308, 315, 433, 650, 664
MmeI TCCRAC 1 cut(s) 451
MnlI CCTC 8 cut(s) 76, 448, 467, 592, 712, 718, 744, 806
Mph1103I ATGCAT 2 cut(s) 191, 250
MseI TTAA 4 cut(s) 306, 345, 386, 398
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 4 cut(s) 760, 772, 786, 801
MspR9I CCNGG 4 cut(s) 157, 499, 760, 761
MvaI CCWGG 2 cut(s) 157, 499
MvnI CGCG 2 cut(s) 756, 767
MwoI GCNNNNNNNGC 4 cut(s) 226, 417, 762, 764
NciI CCSGG 2 cut(s) 760, 761
NheI GCTAGC 1 cut(s) 548
NlaIII CATG 5 cut(s) 193, 252, 262, 433, 583
NlaIV GGNNCC 3 cut(s) 161, 577, 706
NmeAIII GCCGAG 1 cut(s) 774
NsiI ATGCAT 2 cut(s) 191, 250
NspI RCATGY 2 cut(s) 252, 262
PalAI GGCGCGCC 1 cut(s) 754
PauI GCGCGC 2 cut(s) 754, 765
PciI ACATGT 1 cut(s) 258
PfeI GAWTC 3 cut(s) 461, 529, 689
PkrI GCNGC 2 cut(s) 283, 547
PscI ACATGT 1 cut(s) 258
PsiI TTATAA 1 cut(s) 506
Psp6I CCWGG 2 cut(s) 155, 497
PspGI CCWGG 2 cut(s) 155, 497
PspN4I GGNNCC 3 cut(s) 161, 577, 706
PspPI GGNCC 3 cut(s) 160, 705, 803
PstI CTGCAG 1 cut(s) 283
PteI GCGCGC 2 cut(s) 754, 765
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 15, 645
RsaNI GTAC 2 cut(s) 14, 644
SaqAI TTAA 4 cut(s) 306, 345, 386, 398
SatI GCNGC 2 cut(s) 282, 546
Sau96I GGNCC 3 cut(s) 160, 705, 803
ScrFI CCNGG 4 cut(s) 157, 499, 760, 761
SfaNI GCATC 2 cut(s) 176, 316
SfcI CTRYAG 1 cut(s) 279
SgsI GGCGCGCC 1 cut(s) 754
SinI GGWCC 2 cut(s) 160, 803
SmaI CCCGGG 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 7 cut(s) 115, 141, 308, 315, 433, 650, 664
SsiI CCGC 2 cut(s) 86, 272
SspI AATATT 1 cut(s) 358
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 4 cut(s) 155, 497, 758, 759
TaaI ACNGT 3 cut(s) 290, 342, 403
TaqI TCGA 1 cut(s) 710
TasI AATT 7 cut(s) 115, 141, 308, 315, 433, 650, 664
TfiI GAWTC 3 cut(s) 461, 529, 689
Tru1I TTAA 4 cut(s) 306, 345, 386, 398
Tru9I TTAA 4 cut(s) 306, 345, 386, 398
TscAI CASTG 4 cut(s) 180, 283, 547, 601
TseI GCWGC 2 cut(s) 281, 545
TspDTI ATGAA 3 cut(s) 206, 446, 596
TspMI CCCGGG 1 cut(s) 759
TspRI CASTG 4 cut(s) 180, 283, 547, 601
VpaK11BI GGWCC 2 cut(s) 160, 803
XapI RAATTY 2 cut(s) 433, 664
XceI RCATGY 2 cut(s) 252, 262
XmaI CCCGGG 1 cut(s) 759
XspI CTAG 1 cut(s) 549
Zsp2I ATGCAT 2 cut(s) 191, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.