Rorug05G0385500

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000148
Physical Location & Seq
Reverse (-)
52312356 .. 52312676
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0385500.1

Sequence Viewer

Length: 321 bp
ATGCCCCTCTCCTCCTGCCCATCTCTTTGCAAGGAGACCATCGACGCGGAGGAGGATCTAAACTTCCTTAAAGAGCCAACCGAGCAGAGCCACGACGTGTCGCACTATCTAAATCCAGACCAATTCGATGGCGAGAACTACGATGATGCTGATGACTTCTTTGATTTCGAAGAGGGCGACCAGGAGGGGCACAACGAGCCGGAGGATGGCAAGAAGCACGTCATCGTTTTGAAGGGGGCAAACTTCAACGAGACCATGAAGAAGAACATGTGTTTGGGGCCGAAAGCCAGGGTTTTGGGCCCGAAAGTGTTCGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

106

Amino Acids

12.0

Weight (kDa)

4.41

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 47
AciI CCGC 1 cut(s) 47
AclWI GGATC 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 206
AflIII ACRYGT 2 cut(s) 96, 267
AgsI TTSAA 2 cut(s) 232, 247
AjiI CACGTC 2 cut(s) 97, 220
AjnI CCWGG 2 cut(s) 180, 287
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
Alw26I GTCTC 2 cut(s) 29, 245
AlwI GGATC 1 cut(s) 63
AoxI GGCC 2 cut(s) 278, 298
ApaI GGGCCC 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 308
AspS9I GGNCC 3 cut(s) 278, 298, 299
AsuII TTCGAA 1 cut(s) 168
BaeGI GKGCMC 2 cut(s) 192, 302
BanII GRGCYC 1 cut(s) 302
BccI CCATC 4 cut(s) 28, 47, 122, 200
BciT130I CCWGG 2 cut(s) 182, 289
BcoDI GTCTC 2 cut(s) 29, 245
Bme1390I CCNGG 2 cut(s) 182, 289
BmgBI CACGTC 2 cut(s) 97, 220
BmgT120I GGNCC 3 cut(s) 278, 298, 299
BmiI GGNNCC 2 cut(s) 279, 300
BmrFI CCNGG 2 cut(s) 182, 289
BmsI GCATC 1 cut(s) 136
Bpu14I TTCGAA 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 29, 245
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseBI CCWGG 2 cut(s) 182, 289
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 2 cut(s) 192, 302
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 2 cut(s) 280, 300
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 2 cut(s) 29, 245
BsnI GGCC 2 cut(s) 280, 300
Bso31I GGTCTC 2 cut(s) 29, 245
Bsp119I TTCGAA 1 cut(s) 168
Bsp120I GGGCCC 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 192, 302
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 47
BspANI GGCC 2 cut(s) 280, 300
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 279, 300
BspPI GGATC 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 168
BspTNI GGTCTC 2 cut(s) 29, 245
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 55
Bst2UI CCWGG 2 cut(s) 182, 289
Bst6I CTCTTC 1 cut(s) 165
BstBI TTCGAA 1 cut(s) 168
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 47
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 2 cut(s) 29, 245
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 82, 196
BstNI CCWGG 2 cut(s) 182, 289
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 2 cut(s) 180, 287
BstSLI GKGCMC 2 cut(s) 192, 302
BstUI CGCG 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 55
BstXI CCANNNNNNTGG 2 cut(s) 128, 295
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 2 cut(s) 280, 300
BtrI CACGTC 2 cut(s) 97, 220
BtsCI GGATG 1 cut(s) 211
Cfr13I GGNCC 3 cut(s) 278, 298, 299
CseI GACGC 1 cut(s) 53
CviAII CATG 2 cut(s) 256, 268
CviJI RGCY 6 cut(s) 76, 90, 199, 280, 287, 300
CviKI_1 RGCY 6 cut(s) 76, 90, 199, 280, 287, 300
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
DraIII CACNNNGTG 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 302
Eco31I GGTCTC 2 cut(s) 29, 245
EcoRII CCWGG 2 cut(s) 180, 287
EcoT38I GRGCYC 1 cut(s) 302
FaeI CATG 2 cut(s) 259, 271
FaiI YATR 2 cut(s) 257, 269
FatI CATG 2 cut(s) 255, 267
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 302
HaeIII GGCC 2 cut(s) 280, 300
HapII CCGG 1 cut(s) 200
HgaI GACGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 259, 271
HpaII CCGG 1 cut(s) 200
Hpy188III TCNNGA 1 cut(s) 116
Hpy99I CGWCG 2 cut(s) 47, 98
HpyAV CCTTC 1 cut(s) 226
HpyCH4IV ACGT 2 cut(s) 96, 219
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 196
HpySE526I ACGT 2 cut(s) 96, 219
Hsp92II CATG 2 cut(s) 259, 271
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 7 cut(s) 28, 129, 167, 194, 213, 274, 301
LweI GCATC 1 cut(s) 136
MaeII ACGT 2 cut(s) 96, 219
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 3 cut(s) 182, 271, 274
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 192, 302
MluCI AATT 1 cut(s) 122
MnlI CCTC 7 cut(s) 17, 22, 43, 46, 166, 178, 196
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 1 cut(s) 69
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 182, 289
MvaI CCWGG 2 cut(s) 182, 289
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 82, 196
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 259, 271
NlaIV GGNNCC 2 cut(s) 279, 300
NspI RCATGY 1 cut(s) 271
NspV TTCGAA 1 cut(s) 168
PciI ACATGT 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 308
PscI ACATGT 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 180, 287
PspGI CCWGG 2 cut(s) 180, 287
PspN4I GGNNCC 2 cut(s) 279, 300
PspOMI GGGCCC 1 cut(s) 298
PspPI GGNCC 3 cut(s) 278, 298, 299
PsuI RGATCY 1 cut(s) 55
SaqAI TTAA 1 cut(s) 69
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 3 cut(s) 278, 298, 299
ScrFI CCNGG 2 cut(s) 182, 289
SduI GDGCHC 2 cut(s) 192, 302
SetI ASST 2 cut(s) 99, 222
SfaNI GCATC 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 168
Sse9I AATT 1 cut(s) 122
SsiI CCGC 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 180, 287
TaiI ACGT 2 cut(s) 99, 222
TaqI TCGA 3 cut(s) 42, 126, 168
TasI AATT 1 cut(s) 122
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 272
XceI RCATGY 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.