Rmu_sc0016063.1_g000001

Protein of unknown function (DUF674)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016063.1
Physical Location & Seq
Reverse (-)
2 .. 492
491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016063.1_g000001.1.cds

Sequence Viewer

Length: 379 bp
atggctcaagaagtatcagatgcgaagaatatcagcttgatggcattagtggataaggggagaaacagagttatcttcgtagaggccgataatgatttcattgatgttttcaggtccaatgcatgtagagacatgttgttgcttccgcacagtgcagctaactgtcattgcaagaacctcaaattgaaaattactgacgatgctgagccaacacggtttagctgctgtggttatagttctcataactcctgcttaagttattatgcaacggttacttgcccttcatgtgtaccgcctcgctactatccgcatgccatgaattctcaagtaaatctttcagtggacgattctcaagttggaggggtctttgtaaaagaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

13.97

Weight (kDa)

6.04

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 146, 293, 308
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 1 cut(s) 291
AflII CTTAAG 1 cut(s) 253
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 1 cut(s) 187
AluBI AGCT 3 cut(s) 36, 158, 222
AluI AGCT 3 cut(s) 36, 158, 222
Alw26I GTCTC 1 cut(s) 123
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 155, 222
ApoI RAATTY 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 114
AvaII GGWCC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 167, 209
BccI CCATC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 253
BisI GCNGC 2 cut(s) 156, 223
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 2 cut(s) 157, 224
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmsI GCATC 2 cut(s) 10, 190
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 309, 336
Bse3DI GCAATG 1 cut(s) 166
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 167, 209
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 86
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 3 cut(s) 146, 293, 308
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 196
BspTI CTTAAG 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 166
Bst4CI ACNGT 4 cut(s) 152, 164, 216, 271
BstAFI CTTAAG 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 204
BstMAI GTCTC 1 cut(s) 123
BstNSI RCATGY 3 cut(s) 126, 136, 314
BstV1I GCAGC 2 cut(s) 167, 209
BsuRI GGCC 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 157, 345
Cac8I GCNNGC 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 290
CviAII CATG 5 cut(s) 123, 133, 285, 311, 316
CviJI RGCY 6 cut(s) 5, 36, 86, 158, 208, 222
CviKI_1 RGCY 6 cut(s) 5, 36, 86, 158, 208, 222
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 124
FaeI CATG 5 cut(s) 126, 136, 288, 314, 319
FaiI YATR 8 cut(s) 124, 134, 234, 243, 264, 286, 312, 317
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FatI CATG 5 cut(s) 122, 132, 284, 310, 315
Fnu4HI GCNGC 2 cut(s) 156, 223
Fsp4HI GCNGC 2 cut(s) 156, 223
GluI GCNGC 2 cut(s) 156, 223
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 5 cut(s) 126, 136, 288, 314, 319
HinfI GANTC 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 290, 343
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 2 cut(s) 290, 343
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 4 cut(s) 152, 164, 216, 271
HpyCH4V TGCA 4 cut(s) 122, 155, 171, 266
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 5 cut(s) 126, 136, 288, 314, 319
LpnPI CCDG 2 cut(s) 97, 262
Lsp1109I GCAGC 2 cut(s) 167, 209
LweI GCATC 2 cut(s) 10, 190
MaeIII GTNAC 1 cut(s) 271
MboII GAAGA 2 cut(s) 37, 67
MluCI AATT 3 cut(s) 182, 189, 319
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 4 cut(s) 76, 188, 306, 353
Mph1103I ATGCAT 1 cut(s) 124
MseI TTAA 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 253
NlaIII CATG 5 cut(s) 126, 136, 288, 314, 319
NsiI ATGCAT 1 cut(s) 124
NspI RCATGY 3 cut(s) 126, 136, 314
PaeI GCATGC 1 cut(s) 314
PciI ACATGT 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 347
PkrI GCNGC 2 cut(s) 157, 224
PscI ACATGT 1 cut(s) 132
PspPI GGNCC 1 cut(s) 114
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 156, 223
Sau96I GGNCC 1 cut(s) 114
SetI ASST 5 cut(s) 38, 116, 160, 180, 224
SfaNI GCATC 2 cut(s) 10, 190
SinI GGWCC 1 cut(s) 114
SmlI CTYRAG 4 cut(s) 6, 253, 324, 351
SmoI CTYRAG 4 cut(s) 6, 253, 324, 351
SphI GCATGC 1 cut(s) 314
Sse9I AATT 3 cut(s) 182, 189, 319
SsiI CCGC 3 cut(s) 146, 293, 308
TaaI ACNGT 4 cut(s) 152, 164, 216, 271
TasI AATT 3 cut(s) 182, 189, 319
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 2 cut(s) 157, 345
TseI GCWGC 2 cut(s) 155, 222
TspDTI ATGAA 3 cut(s) 88, 273, 332
TspRI CASTG 2 cut(s) 157, 345
Vha464I CTTAAG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 114
XapI RAATTY 1 cut(s) 319
XceI RCATGY 3 cut(s) 126, 136, 314
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.