Rroxscaffold_1G00013680

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000148
Physical Location & Seq
Reverse (-)
16891678 .. 16895252
3575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013680.1

Sequence Viewer

Length: 426 bp
ATGCAACCAATGCCTTGGATGACTACGAGCAAGCCTAGGTTGCTGAATGTGATTCTGTTCTTACAATCCATGGCTAGTATTAGCTTGAAGGCCTTGGTGGACAAGGGAAGCAACAGAGTTATATTTATTGACGAATCTGATGATTTTATGGATGTTCTCTTTAGTTTCTTGATATTACCTATTGGAAAACTTATCAAGCTTGCTTATCGGCATCCATTATCATTGAATTTTCGTTGCATACACAATTTGTACCGAAGTGTAAGGACATTGCGACTAGCCGTTGTTTGTGAATTCCCAGGTTTGGAATTTGATCTTGCGCTCAGTTGGGTCGAATTCACCTTTGACGGATACGCTGCTGAAGTAACAGATCTGAGCATTAATAATTTTATTCAAGAAAAGTGGAAGAATACTCAAACAGACGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

141

Amino Acids

16.27

Weight (kDa)

6.08

Isoelectric Point (pI)

27.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 26 - 93 2.2e-18 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 226, 290, 305, 332
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 3 cut(s) 88, 226, 392
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 2 cut(s) 84, 199
AluI AGCT 2 cut(s) 84, 199
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 4 cut(s) 226, 290, 305, 332
AseI ATTAAT 1 cut(s) 378
AspA2I CCTAGG 1 cut(s) 35
AspLEI GCGC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 328
AvrII CCTAGG 1 cut(s) 35
BbvI GCAGC 1 cut(s) 340
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 297
BciVI GTATCC 1 cut(s) 341
BfaI CTAG 3 cut(s) 36, 75, 275
BfuI GTATCC 1 cut(s) 341
BglII AGATCT 1 cut(s) 367
BisI GCNGC 1 cut(s) 354
BlnI CCTAGG 1 cut(s) 35
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 220
BsaJI CCNNGG 5 cut(s) 14, 35, 69, 93, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 5 cut(s) 14, 35, 69, 93, 295
BseGI GGATG 3 cut(s) 24, 157, 211
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 2 cut(s) 334, 362
BseXI GCAGC 1 cut(s) 340
BshFI GGCC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 301
BsnI GGCC 1 cut(s) 92
Bsp143I GATC 2 cut(s) 310, 367
Bsp19I CCATGG 1 cut(s) 69
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 2 cut(s) 333, 363
BsrDI GCAATG 1 cut(s) 266
BssECI CCNNGG 5 cut(s) 14, 35, 69, 93, 295
BssMI GATC 2 cut(s) 310, 367
BssT1I CCWWGG 4 cut(s) 14, 35, 69, 93
Bst2UI CCWGG 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 10
BstC8I GCNNGC 2 cut(s) 32, 201
BstDEI CTNAG 2 cut(s) 320, 371
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 24, 157, 211
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 2 cut(s) 313, 370
BstMBI GATC 2 cut(s) 310, 367
BstMWI GCNNNNNNNGC 2 cut(s) 10, 40
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 1 cut(s) 15
BstYI RGATCY 1 cut(s) 367
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 3 cut(s) 24, 157, 211
Cac8I GCNNGC 2 cut(s) 32, 201
CfoI GCGC 1 cut(s) 319
Csp6I GTAC 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 380, 415
CviAII CATG 1 cut(s) 70
CviJI RGCY 6 cut(s) 34, 74, 84, 92, 199, 278
CviKI_1 RGCY 6 cut(s) 34, 74, 84, 92, 199, 278
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 320, 371
DpnI GATC 2 cut(s) 312, 369
DpnII GATC 2 cut(s) 310, 367
Eco130I CCWWGG 4 cut(s) 14, 35, 69, 93
Eco147I AGGCCT 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 378
EcoRI GAATTC 2 cut(s) 290, 332
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 4 cut(s) 14, 35, 69, 93
ErhI CCWWGG 4 cut(s) 14, 35, 69, 93
FaeI CATG 1 cut(s) 73
FaiI YATR 5 cut(s) 71, 122, 149, 239, 424
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 3 cut(s) 31, 164, 198
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 3 cut(s) 36, 75, 275
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 354
HaeIII GGCC 1 cut(s) 92
HhaI GCGC 1 cut(s) 319
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 2 cut(s) 52, 134
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 139, 372
Hpy188III TCNNGA 2 cut(s) 169, 392
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 4, 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 40
HpyF3I CTNAG 2 cut(s) 320, 371
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 2 cut(s) 310, 367
LpnPI CCDG 2 cut(s) 282, 309
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 1 cut(s) 220
MaeI CTAG 3 cut(s) 36, 75, 275
MaeIII GTNAC 1 cut(s) 361
MalI GATC 2 cut(s) 312, 369
MboI GATC 2 cut(s) 310, 367
MboII GAAGA 1 cut(s) 415
MflI RGATCY 1 cut(s) 367
MluCI AATT 6 cut(s) 226, 244, 290, 305, 332, 382
MseI TTAA 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 2 cut(s) 10, 40
NcoI CCATGG 1 cut(s) 69
NdeII GATC 2 cut(s) 310, 367
NlaIII CATG 1 cut(s) 73
PceI AGGCCT 1 cut(s) 92
PfeI GAWTC 2 cut(s) 52, 134
PkrI GCNGC 1 cut(s) 355
PshBI ATTAAT 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 2 cut(s) 310, 367
ScrFI CCNGG 1 cut(s) 297
SetI ASST 6 cut(s) 41, 86, 181, 201, 301, 341
SfaNI GCATC 1 cut(s) 220
Sse9I AATT 6 cut(s) 226, 244, 290, 305, 332, 382
SseBI AGGCCT 1 cut(s) 92
SspMI CTAG 3 cut(s) 36, 75, 275
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 4 cut(s) 14, 35, 69, 93
TaqI TCGA 1 cut(s) 330
TasI AATT 6 cut(s) 226, 244, 290, 305, 332, 382
TfiI GAWTC 2 cut(s) 52, 134
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TseI GCWGC 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 360
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 4 cut(s) 226, 290, 305, 332
XmaJI CCTAGG 1 cut(s) 35
XspI CTAG 3 cut(s) 36, 75, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.