MD11G1084200.v1.1

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000148
Physical Location & Seq
Reverse (-)
7100281 .. 7100703
423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1084200.v1.1.491

Sequence Viewer

Length: 423 bp
ATGGGAGAAAAATCTATGAACAAAATTAGCTTGAAGGTCTTGATGAACAACTTGACCAACAAAGTCATCTTTGCAGAGTGTGATAGTGATTTTATTGATGTTCTCCTCAGTTTCTTGGCAATCCCCTTGGGAAAAATTGTTAGGCTTTCCAATCGTTCACAACCCTTAAGAATTGGTTGCATGGACAATTTATATGGAAATGTTGAAAATCTTGATTTACAGCATTTTCGAACAGCAGAATGTCGAGACATGTTGCTACATCCCCGCAGTAGAGCTGAAGATCTTTTGATGAACCTGAAACTGAAATACGATCAATTCGAGGCTTCCCGGTACTTTAAGTGTTCTAATGAATCTTGTCGCAGTCCTATACAAAGCTATAGTTATTACGAAACTGTTTGTTGTTGGTGTAAGTGTTTGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

141

Amino Acids

16.22

Weight (kDa)

8.06

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 7 - 137 7.9e-44 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 1 cut(s) 332
AflII CTTAAG 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 34, 206
AluBI AGCT 3 cut(s) 30, 275, 375
AluI AGCT 3 cut(s) 30, 275, 375
Alw26I GTCTC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 328
AsuII TTCGAA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 376
BfrI CTTAAG 1 cut(s) 166
BglII AGATCT 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 328
Bpu14I TTCGAA 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 240
Bsp119I TTCGAA 1 cut(s) 229
Bsp143I GATC 2 cut(s) 280, 310
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 229
BspTI CTTAAG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 280, 310
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 394
BstAFI CTTAAG 1 cut(s) 166
BstBI TTCGAA 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 283, 313
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 280, 310
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BtsCI GGATG 1 cut(s) 259
Csp6I GTAC 1 cut(s) 331
CviAII CATG 2 cut(s) 181, 250
CviJI RGCY 5 cut(s) 30, 145, 275, 323, 375
CviKI_1 RGCY 5 cut(s) 30, 145, 275, 323, 375
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 107
DpnI GATC 2 cut(s) 282, 312
DpnII GATC 2 cut(s) 280, 310
Eco130I CCWWGG 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 184, 253
FaiI YATR 7 cut(s) 17, 182, 193, 195, 251, 368, 378
FatI CATG 2 cut(s) 180, 249
FauI CCCGC 1 cut(s) 272
FokI GGATG 1 cut(s) 246
HapII CCGG 1 cut(s) 328
Hin1II CATG 2 cut(s) 184, 253
HinfI GANTC 1 cut(s) 350
HpaII CCGG 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 158
Hpy188III TCNNGA 3 cut(s) 40, 212, 245
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4V TGCA 2 cut(s) 74, 180
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 2 cut(s) 184, 253
Kzo9I GATC 2 cut(s) 280, 310
LpnPI CCDG 2 cut(s) 308, 341
MalI GATC 2 cut(s) 282, 312
MboI GATC 2 cut(s) 280, 310
MboII GAAGA 1 cut(s) 290
MflI RGATCY 1 cut(s) 280
MluCI AATT 5 cut(s) 24, 135, 171, 187, 314
MnlI CCTC 2 cut(s) 116, 313
MseI TTAA 3 cut(s) 167, 336, 421
MspCI CTTAAG 1 cut(s) 166
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 328
NciI CCSGG 1 cut(s) 328
NdeII GATC 2 cut(s) 280, 310
NlaIII CATG 2 cut(s) 184, 253
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 1 cut(s) 229
PciI ACATGT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 1 cut(s) 350
PscI ACATGT 1 cut(s) 249
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SaqAI TTAA 3 cut(s) 167, 336, 421
Sau3AI GATC 2 cut(s) 280, 310
ScrFI CCNGG 1 cut(s) 328
SetI ASST 5 cut(s) 32, 39, 277, 297, 377
SfcI CTRYAG 1 cut(s) 376
SfuI TTCGAA 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 5 cut(s) 24, 135, 171, 187, 314
SsiI CCGC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 394
TaqI TCGA 3 cut(s) 229, 244, 318
TasI AATT 5 cut(s) 24, 135, 171, 187, 314
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 3 cut(s) 167, 336, 421
Tru9I TTAA 3 cut(s) 167, 336, 421
TspDTI ATGAA 4 cut(s) 32, 59, 305, 363
Vha464I CTTAAG 1 cut(s) 166
XceI RCATGY 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.