Rmu_sc0002253.1_g000012

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002253.1
OG0000148
Physical Location & Seq
Reverse (-)
64501 .. 65466
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002253.1_g000012.1.cds

Sequence Viewer

Length: 825 bp
atggcaggggaggcagtgattgaggaagaagaagagatttcagtgaagcctatgtttcttgactcctccacgtggatttacaccgaaacagatgcaaggctcttcttcaaagaagccattgtggaagaagaaaagatttctgtgaagcttatggtccgtaaatcaaggaagatggtttgttttgcagaagcaggggaagattttgtcaatttactcttcagtttcctgactattccactcggattcatattaaaacagatgaagtattcttcttggaaaggatgtattgatcagttgtacaagagtgtccaagatcttgatgatgagcaatacttgaagtcaaatgaccacaagaatattctactgagtcccaaaatttttcctagtttttcctacaagaaccatattttgggaattcaggagggcaaggcctcatattactatgcttattgtcgtccaaacagtgcagaggatatgttgattactgataaaaccctcatcccttctcaggtgatgtatacattccatctcaaattggtgaataatataagttctcaaggatttttgaaaggaccgaccatgttcaccgtaactgacaagctggttgtaaggcctatatctcccatctttggcttttccattttgaatgaattgaaggtacctttggatgacataaaggaggaaatagtacaagttggcaagggggaggttttgcgtctactggtggcatctattgctggcgattctgccttaactgatgttttcatacactactacagaaatcttgattcaggacacccgcgtcatttttacaatgacacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

274

Amino Acids

31.39

Weight (kDa)

5.46

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 801
Acc65I GGTACC 1 cut(s) 658
AccB1I GGYRCC 1 cut(s) 658
AccB7I CCANNNNNTGG 1 cut(s) 409
AccI GTMKAC 2 cut(s) 518, 718
AccII CGCG 1 cut(s) 802
AciI CCGC 1 cut(s) 800
AcsI RAATTY 2 cut(s) 375, 414
AcuI CTGAAG 1 cut(s) 202
AcvI CACGTG 1 cut(s) 72
AfaI GTAC 3 cut(s) 299, 660, 690
AfiI CCNNNNNNNGG 4 cut(s) 72, 409, 508, 629
AgsI TTSAA 5 cut(s) 109, 337, 568, 646, 655
AjuI GAANNNNNNNTTGG 4 cut(s) 392, 424, 647, 679
AluBI AGCT 2 cut(s) 148, 601
AluI AGCT 2 cut(s) 148, 601
AoxI GGCC 2 cut(s) 429, 611
ApoI RAATTY 2 cut(s) 375, 414
Asp718I GGTACC 1 cut(s) 658
AspS9I GGNCC 2 cut(s) 154, 572
AsuHPI GGTGA 3 cut(s) 523, 550, 577
AvaII GGWCC 2 cut(s) 154, 572
BanI GGYRCC 1 cut(s) 658
BbrPI CACGTG 1 cut(s) 72
BccI CCATC 3 cut(s) 166, 534, 632
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BclI TGATCA 1 cut(s) 289
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 775
BglII AGATCT 1 cut(s) 313
Bme18I GGWCC 2 cut(s) 154, 572
BmgT120I GGNCC 2 cut(s) 154, 572
BmiI GGNNCC 1 cut(s) 660
BmsI GCATC 2 cut(s) 82, 737
BpuEI CTTGAG 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 72
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 409, 508, 629
Bse1I ACTGG 1 cut(s) 726
BseGI GGATG 3 cut(s) 287, 498, 673
BseLI CCNNNNNNNGG 4 cut(s) 72, 409, 508, 629
BseMII CTCAG 2 cut(s) 356, 521
BseNI ACTGG 1 cut(s) 726
BseRI GAGGAG 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 486
Bsh1236I CGCG 1 cut(s) 802
BshFI GGCC 2 cut(s) 431, 613
BshNI GGYRCC 1 cut(s) 658
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 4 cut(s) 72, 409, 508, 629
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 2 cut(s) 431, 613
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 2 cut(s) 289, 313
BspACI CCGC 1 cut(s) 800
BspANI GGCC 2 cut(s) 431, 613
BspCNI CTCAG 2 cut(s) 357, 520
BspFNI CGCG 1 cut(s) 802
BspLI GGNNCC 1 cut(s) 660
BspQI GCTCTTC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 658
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 726
BssMI GATC 2 cut(s) 289, 313
BssNAI GTATAC 1 cut(s) 519
Bst1107I GTATAC 1 cut(s) 519
Bst4CI ACNGT 2 cut(s) 464, 589
Bst6I CTCTTC 3 cut(s) 27, 107, 221
BstAPI GCANNNNNTGC 1 cut(s) 734
BstAUI TGTACA 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 739
BstDEI CTNAG 2 cut(s) 365, 507
BstF5I GGATG 3 cut(s) 287, 498, 673
BstFNI CGCG 1 cut(s) 802
BstKTI GATC 2 cut(s) 292, 316
BstMBI GATC 2 cut(s) 289, 313
BstMWI GCNNNNNNNGC 2 cut(s) 11, 734
BstSFI CTRYAG 1 cut(s) 775
BstUI CGCG 1 cut(s) 802
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BstZ17I GTATAC 1 cut(s) 519
BsuRI GGCC 2 cut(s) 431, 613
BtsCI GGATG 3 cut(s) 287, 498, 673
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 3 cut(s) 21, 48, 469
Cac8I GCNNGC 1 cut(s) 739
Cfr13I GGNCC 2 cut(s) 154, 572
CseI GACGC 2 cut(s) 704, 791
Csp6I GTAC 3 cut(s) 298, 659, 689
CviAII CATG 1 cut(s) 580
CviJI RGCY 8 cut(s) 49, 100, 116, 148, 431, 601, 613, 633
CviKI_1 RGCY 8 cut(s) 49, 100, 116, 148, 431, 601, 613, 633
CviQI GTAC 3 cut(s) 298, 659, 689
DdeI CTNAG 2 cut(s) 365, 507
DpnI GATC 2 cut(s) 291, 315
DpnII GATC 2 cut(s) 289, 313
DrdI GACNNNNNNGTC 1 cut(s) 801
DseDI GACNNNNNNGTC 1 cut(s) 801
Eam1104I CTCTTC 3 cut(s) 27, 107, 221
EarI CTCTTC 3 cut(s) 27, 107, 221
Eco147I AGGCCT 2 cut(s) 431, 613
Eco47I GGWCC 2 cut(s) 154, 572
Eco57I CTGAAG 1 cut(s) 202
Eco72I CACGTG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 414
FaeI CATG 1 cut(s) 583
FaqI GGGAC 1 cut(s) 354
FatI CATG 1 cut(s) 579
FauI CCCGC 1 cut(s) 807
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 2 cut(s) 518, 718
FokI GGATG 3 cut(s) 294, 485, 680
FspBI CTAG 1 cut(s) 384
HaeIII GGCC 2 cut(s) 431, 613
HgaI GACGC 2 cut(s) 704, 791
Hin1II CATG 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 5 cut(s) 62, 243, 367, 743, 788
HphI GGTGA 3 cut(s) 523, 550, 577
Hpy166II GTNNAC 3 cut(s) 519, 585, 719
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 6 cut(s) 59, 226, 317, 419, 785, 792
Hpy8I GTNNAC 3 cut(s) 519, 585, 719
HpyAV CCTTC 2 cut(s) 513, 649
HpyCH4III ACNGT 2 cut(s) 464, 589
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 95, 185, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 734
HpyF3I CTNAG 2 cut(s) 365, 507
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 1 cut(s) 583
KpnI GGTACC 1 cut(s) 662
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 289, 313
LguI GCTCTTC 1 cut(s) 107
LpnPI CCDG 8 cut(s) 177, 239, 404, 494, 587, 707, 723, 777
LweI GCATC 2 cut(s) 82, 737
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 589
MalI GATC 2 cut(s) 291, 315
MboI GATC 2 cut(s) 289, 313
MflI RGATCY 1 cut(s) 313
MluCI AATT 5 cut(s) 208, 375, 414, 533, 650
MlyI GAGTC 2 cut(s) 56, 376
MnlI CCTC 9 cut(s) 4, 16, 76, 415, 442, 463, 506, 673, 700
MseI TTAA 2 cut(s) 251, 752
MvnI CGCG 1 cut(s) 802
MwoI GCNNNNNNNGC 2 cut(s) 11, 734
NdeII GATC 2 cut(s) 289, 313
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 1 cut(s) 660
PceI AGGCCT 2 cut(s) 431, 613
PciSI GCTCTTC 1 cut(s) 107
PfeI GAWTC 3 cut(s) 243, 743, 788
PflMI CCANNNNNTGG 1 cut(s) 409
PleI GAGTC 2 cut(s) 56, 375
PmaCI CACGTG 1 cut(s) 72
PmlI CACGTG 1 cut(s) 72
PpsI GAGTC 2 cut(s) 56, 375
Ppu21I YACGTR 1 cut(s) 72
PspCI CACGTG 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 660
PspPI GGNCC 2 cut(s) 154, 572
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 3 cut(s) 299, 660, 690
RsaNI GTAC 3 cut(s) 298, 659, 689
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 251, 752
Sau3AI GATC 2 cut(s) 289, 313
Sau96I GGNCC 2 cut(s) 154, 572
SchI GAGTC 2 cut(s) 56, 376
SetI ASST 7 cut(s) 74, 150, 513, 603, 660, 664, 711
SfaNI GCATC 2 cut(s) 82, 737
SfcI CTRYAG 1 cut(s) 775
SinI GGWCC 2 cut(s) 154, 572
SmlI CTYRAG 1 cut(s) 555
SmoI CTYRAG 1 cut(s) 555
Sse9I AATT 5 cut(s) 208, 375, 414, 533, 650
SseBI AGGCCT 2 cut(s) 431, 613
SsiI CCGC 1 cut(s) 800
SspI AATATT 1 cut(s) 358
SspMI CTAG 1 cut(s) 384
StuI AGGCCT 2 cut(s) 431, 613
TaaI ACNGT 2 cut(s) 464, 589
TaiI ACGT 1 cut(s) 74
TaqII GACCGA 1 cut(s) 589
TasI AATT 5 cut(s) 208, 375, 414, 533, 650
TatI WGTACW 2 cut(s) 297, 688
TfiI GAWTC 3 cut(s) 243, 743, 788
Tru1I TTAA 2 cut(s) 251, 752
Tru9I TTAA 2 cut(s) 251, 752
TscAI CASTG 3 cut(s) 21, 48, 469
TspDTI ATGAA 4 cut(s) 235, 275, 663, 754
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 3 cut(s) 21, 48, 469
Van91I CCANNNNNTGG 1 cut(s) 409
VpaK11BI GGWCC 2 cut(s) 154, 572
XapI RAATTY 2 cut(s) 375, 414
XmiI GTMKAC 2 cut(s) 518, 718
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.