Rroxscaffold_1G00012810

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000148
Physical Location & Seq
Reverse (-)
15661595 .. 15664465
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012810.1

Sequence Viewer

Length: 552 bp
ATGATTTACAAGTGGATGGAGACATTACTGAAGAGCTTTTCTTTCTTTCTTAAGCTTGGAGTCACGGATGGAGACATTACTGAAGAGATATTTAATATTGGTGTTAGTGAGGTTTTGAATTTGCTTATCTGCTCATTTGTATCAAAGACACCATTGACTGAAACTCTACTTAAGCATAAACCAGAACCAAATTTTAGCACTGAAATAGTTGATCAAGGGGAGACGGTGATTGCGGAAGAAGAAGAGATTTCAGTGAAGCCTATGGTTAGTACACCAAGGAAGGCATGGGAATATTTTGTTAATTTACCCTTCAGTTTCCTGACTCTTCCACGTGGATTCACATCAAAACAGATGCAAGGCTCTTCTTCAAAAGAACCCATTGTGGAAGAAGAAAAGATTTCTGTGAAGCTTATGGTCAGCAAATCAAGGAAGATGGTTTGTTTTGCAGAAGCGGGGGAAGATTTTGTCAATTTACTCTTCAGTTTCCTGACTATTCCACTCGGATTCATATTAAAACAGATGCGGGATTCTTCTTGGGAAAGGATGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

183

Amino Acids

20.99

Weight (kDa)

5.1

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 11 - 123 2e-14 Protein of unknown function (DUF674)
DUF674 PF05056 121 - 177 5.5e-16 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 233, 452, 523
AcsI RAATTY 2 cut(s) 118, 190
AcuI CTGAAG 4 cut(s) 50, 102, 295, 463
AcvI CACGTG 1 cut(s) 332
AfaI GTAC 1 cut(s) 271
AflII CTTAAG 2 cut(s) 50, 170
AgsI TTSAA 2 cut(s) 118, 369
AluBI AGCT 3 cut(s) 36, 55, 409
AluI AGCT 3 cut(s) 36, 55, 409
Alw26I GTCTC 3 cut(s) 14, 66, 215
ApoI RAATTY 2 cut(s) 118, 190
AsuHPI GGTGA 1 cut(s) 238
BbrPI CACGTG 1 cut(s) 332
BccI CCATC 3 cut(s) 10, 62, 427
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 3 cut(s) 14, 66, 215
BfrI CTTAAG 2 cut(s) 50, 170
BmsI GCATC 2 cut(s) 342, 510
BsaAI YACGTR 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 3 cut(s) 21, 73, 549
BseJI GATNNNNATC 1 cut(s) 340
BsmAI GTCTC 3 cut(s) 14, 66, 215
BsmBI CGTCTC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 3 cut(s) 233, 452, 523
BspQI GCTCTTC 2 cut(s) 26, 367
BspTI CTTAAG 2 cut(s) 50, 170
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 6 cut(s) 26, 78, 237, 330, 367, 482
BstAFI CTTAAG 2 cut(s) 50, 170
BstBAI YACGTR 1 cut(s) 332
BstF5I GGATG 3 cut(s) 21, 73, 549
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 3 cut(s) 14, 66, 215
BstMBI GATC 1 cut(s) 211
BtsCI GGATG 3 cut(s) 21, 73, 549
BtsIMutI CAGTG 2 cut(s) 198, 258
Csp6I GTAC 1 cut(s) 270
CviAII CATG 1 cut(s) 285
CviJI RGCY 5 cut(s) 36, 55, 259, 360, 409
CviKI_1 RGCY 5 cut(s) 36, 55, 259, 360, 409
CviQI GTAC 1 cut(s) 270
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 6 cut(s) 26, 78, 237, 330, 367, 482
EarI CTCTTC 6 cut(s) 26, 78, 237, 330, 367, 482
Eco130I CCWWGG 1 cut(s) 275
Eco57I CTGAAG 4 cut(s) 50, 102, 295, 463
Eco72I CACGTG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 1 cut(s) 288
FaiI YATR 5 cut(s) 177, 263, 286, 413, 509
FatI CATG 1 cut(s) 284
FauI CCCGC 2 cut(s) 445, 516
FbaI TGATCA 1 cut(s) 211
FokI GGATG 2 cut(s) 28, 80
Hin1II CATG 1 cut(s) 288
HindIII AAGCTT 2 cut(s) 53, 407
HinfI GANTC 5 cut(s) 60, 322, 336, 504, 527
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 1 cut(s) 503
Hpy188III TCNNGA 2 cut(s) 319, 487
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 274, 319
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 2 cut(s) 355, 446
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 1 cut(s) 288
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 211
LguI GCTCTTC 2 cut(s) 26, 367
LpnPI CCDG 3 cut(s) 195, 332, 500
LweI GCATC 2 cut(s) 342, 510
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MluCI AATT 4 cut(s) 118, 190, 301, 469
MlyI GAGTC 2 cut(s) 69, 316
MnlI CCTC 1 cut(s) 103
MseI TTAA 5 cut(s) 51, 93, 171, 300, 512
MspCI CTTAAG 2 cut(s) 50, 170
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 61
PciSI GCTCTTC 2 cut(s) 26, 367
PfeI GAWTC 3 cut(s) 336, 504, 527
PleI GAGTC 2 cut(s) 68, 316
PmaCI CACGTG 1 cut(s) 332
PmlI CACGTG 1 cut(s) 332
PpsI GAGTC 2 cut(s) 68, 316
Ppu21I YACGTR 1 cut(s) 332
PspCI CACGTG 1 cut(s) 332
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SapI GCTCTTC 2 cut(s) 26, 367
SaqAI TTAA 5 cut(s) 51, 93, 171, 300, 512
Sau3AI GATC 1 cut(s) 211
SchI GAGTC 2 cut(s) 69, 316
SetI ASST 5 cut(s) 38, 57, 114, 334, 411
SfaNI GCATC 2 cut(s) 342, 510
SmlI CTYRAG 2 cut(s) 50, 170
SmoI CTYRAG 2 cut(s) 50, 170
Sse9I AATT 4 cut(s) 118, 190, 301, 469
SsiI CCGC 3 cut(s) 233, 452, 523
SspI AATATT 2 cut(s) 97, 293
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 334
TasI AATT 4 cut(s) 118, 190, 301, 469
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 3 cut(s) 336, 504, 527
Tru1I TTAA 5 cut(s) 51, 93, 171, 300, 512
Tru9I TTAA 5 cut(s) 51, 93, 171, 300, 512
TscAI CASTG 2 cut(s) 205, 258
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 496
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 2 cut(s) 205, 258
Vha464I CTTAAG 2 cut(s) 50, 170
XapI RAATTY 2 cut(s) 118, 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.