RLG00000035939

Protein of unknown function (DUF674)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
73731546 .. 73733014
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035939

Sequence Viewer

Length: 954 bp
ATGGCAAATATCATTTTGAAGGGATTGGTGGATATGGAGAGCAAAAAAATCATCTTCATAGACGCTGATGATTTACAAGTGATTCCCCCATTAAGTGCAGCTAGCATTTCCTTGTTTACCAAGCTTGGAGCCACGAATAGCAATACCACTGAGGAGATAACTTTCAGTATTGGAGTCGAGCAGGTTTTGAATTTGCTTGTGAGCTTATTTGTTTCAAAAAACCCTTTCACTGAAACTCTGCTGAAGCCTAATCCTGTACCAAAATTAGGTTGTGTGAATTTCAGTCAAGGAATATGTATTGAATCTCAAATGTCGGGGGCCTTGATAGACGAGGAAAAAGAAAACATCTCTGTCAAGCTCATAGTGAGTGAATCAAAGAATGTGGTTTGCTATGCACAAGTACGTGAGGATTTTATGCTGGATTCCCCTTGGAGAGGATGTATTGATCAGTTGTGCAAGGGTGTCCTGGACGTTGATGAGCAATTTTTTAAGTCAAATTTCCACAAGGAATTGCCATGCAATCCCAAGCTTGTTCCTGGGTTCAGCTATGAGAACAATCTTTTAGGAATTGAGGAGGCCATGTATCATAAGTTTTCTGATCATAAATTTACTGCTGATAGATCCATTATCCCTTCTATGTCCTTGGAGGCACTCAAAGTTAAATTTTTGGATCCCAAATCCCATGGTGATAAAGATAGAAATGCTAGGGGATTCTTAAAAGAAACAGCAATATTCACAGTAACTGACAATTTGGATGTAAGGCCAGTATATCCAATCTTTCGACTGTCTGTTCTTAATGATTTGAAGGTACATTGCACTGATATTGACGATCAAATTGTGCATGTTGGCAAGGAGGCTTTGCATCTTTTAGTGGCTTCTTTTGTTTCTGACTTTGTTCTAACCAATGCTTTCCTACGGAAGCCAAAGGAGCAGGCAGTCAACCAAGAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

318

Amino Acids

35.49

Weight (kDa)

5.34

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 15 - 139 3.8e-18 Protein of unknown function (DUF674)
DUF674 PF05056 146 - 285 6.3e-21 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AclWI GGATC 3 cut(s) 615, 665, 678
AcsI RAATTY 5 cut(s) 190, 277, 496, 605, 662
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 3 cut(s) 258, 402, 810
AfiI CCNNNNNNNGG 2 cut(s) 266, 434
AgsI TTSAA 5 cut(s) 19, 190, 216, 302, 805
AjnI CCWGG 2 cut(s) 465, 535
AluBI AGCT 6 cut(s) 101, 124, 204, 358, 529, 546
AluI AGCT 6 cut(s) 101, 124, 204, 358, 529, 546
Alw21I GWGCWC 1 cut(s) 951
AlwI GGATC 3 cut(s) 615, 665, 678
AlwNI CAGNNNCTG 1 cut(s) 743
AoxI GGCC 3 cut(s) 318, 576, 761
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 5 cut(s) 190, 277, 496, 605, 662
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 698
AsuNHI GCTAGC 1 cut(s) 101
BamHI GGATCC 1 cut(s) 670
Bbv12I GWGCWC 1 cut(s) 951
BbvI GCAGC 1 cut(s) 110
BciT130I CCWGG 2 cut(s) 467, 537
BclI TGATCA 2 cut(s) 445, 598
BfaI CTAG 2 cut(s) 102, 705
BfuAI ACCTGC 1 cut(s) 172
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 467, 537
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 3 cut(s) 130, 319, 672
BmrFI CCNGG 2 cut(s) 467, 537
BmsI GCATC 1 cut(s) 871
BmtI GCTAGC 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 404
BsaJI CCNNGG 4 cut(s) 428, 536, 642, 682
BsaXI ACNNNNNCTCC 4 cut(s) 424, 454, 566, 596
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 434
Bse1I ACTGG 1 cut(s) 764
Bse3DI GCAATG 1 cut(s) 811
BseBI CCWGG 2 cut(s) 467, 537
BseDI CCNNGG 4 cut(s) 428, 536, 642, 682
BseGI GGATG 2 cut(s) 443, 760
BseLI CCNNNNNNNGG 2 cut(s) 266, 434
BseMI GCAATG 1 cut(s) 811
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 764
BseRI GAGGAG 2 cut(s) 167, 587
BseXI GCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 3 cut(s) 320, 578, 763
BsiHKAI GWGCWC 1 cut(s) 951
BslI CCNNNNNNNGG 2 cut(s) 266, 434
BsnI GGCC 3 cut(s) 320, 578, 763
Bsp1286I GDGCHC 1 cut(s) 951
Bsp143I GATC 5 cut(s) 445, 598, 620, 670, 829
Bsp19I CCATGG 1 cut(s) 682
BspANI GGCC 3 cut(s) 320, 578, 763
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 130, 319, 672
BspMI ACCTGC 1 cut(s) 172
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 3 cut(s) 615, 665, 678
BsrDI GCAATG 1 cut(s) 811
BsrI ACTGG 1 cut(s) 764
BssECI CCNNGG 4 cut(s) 428, 536, 642, 682
BssMI GATC 5 cut(s) 445, 598, 620, 670, 829
BssT1I CCWWGG 3 cut(s) 428, 642, 682
Bst2UI CCWGG 2 cut(s) 467, 537
Bst4CI ACNGT 2 cut(s) 739, 786
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 103, 933
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 682
BstENI CCTNNNNNAGG 1 cut(s) 432
BstF5I GGATG 2 cut(s) 443, 760
BstKTI GATC 5 cut(s) 448, 601, 623, 673, 832
BstMBI GATC 5 cut(s) 445, 598, 620, 670, 829
BstMWI GCNNNNNNNGC 1 cut(s) 928
BstNI CCWGG 2 cut(s) 467, 537
BstNSI RCATGY 1 cut(s) 845
BstSCI CCNGG 2 cut(s) 465, 535
BstV1I GCAGC 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 620, 670
BstYI RGATCY 2 cut(s) 620, 670
BsuRI GGCC 3 cut(s) 320, 578, 763
BtgI CCRYGG 1 cut(s) 682
BtsCI GGATG 2 cut(s) 443, 760
BtsIMutI CAGTG 4 cut(s) 147, 228, 816, 949
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 103, 933
CaiI CAGNNNCTG 1 cut(s) 743
Cfr13I GGNCC 1 cut(s) 318
CseI GACGC 1 cut(s) 71
Csp6I GTAC 3 cut(s) 257, 401, 809
CspCI CAANNNNNGTGG 2 cut(s) 363, 398
CviAII CATG 4 cut(s) 516, 580, 683, 842
CviQI GTAC 3 cut(s) 257, 401, 809
DdeI CTNAG 1 cut(s) 150
DpnI GATC 5 cut(s) 447, 600, 622, 672, 831
DpnII GATC 5 cut(s) 445, 598, 620, 670, 829
Eco130I CCWWGG 3 cut(s) 428, 642, 682
Eco57I CTGAAG 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 465, 535
EcoT14I CCWWGG 3 cut(s) 428, 642, 682
ErhI CCWWGG 3 cut(s) 428, 642, 682
FaeI CATG 4 cut(s) 519, 583, 686, 845
FatI CATG 4 cut(s) 515, 579, 682, 841
FbaI TGATCA 2 cut(s) 445, 598
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 2 cut(s) 450, 767
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 2 cut(s) 102, 705
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 3 cut(s) 320, 578, 763
HgaI GACGC 1 cut(s) 71
Hin1II CATG 4 cut(s) 519, 583, 686, 845
HincII GTYRAC 1 cut(s) 940
HindII GTYRAC 1 cut(s) 940
HindIII AAGCTT 2 cut(s) 122, 527
HinfI GANTC 6 cut(s) 82, 174, 302, 371, 422, 711
HphI GGTGA 1 cut(s) 698
Hpy166II GTNNAC 2 cut(s) 117, 940
Hpy188I TCNGA 2 cut(s) 598, 889
Hpy8I GTNNAC 2 cut(s) 117, 940
HpyAV CCTTC 3 cut(s) 13, 642, 799
HpyCH4III ACNGT 2 cut(s) 739, 786
HpyCH4IV ACGT 2 cut(s) 403, 471
HpyCH4V TGCA 7 cut(s) 98, 395, 456, 519, 816, 841, 862
HpyF10VI GCNNNNNNNGC 1 cut(s) 928
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 2 cut(s) 403, 471
Hsp92II CATG 4 cut(s) 519, 583, 686, 845
Ksp22I TGATCA 2 cut(s) 445, 598
Kzo9I GATC 5 cut(s) 445, 598, 620, 670, 829
LmnI GCTCC 2 cut(s) 128, 928
LpnPI CCDG 9 cut(s) 167, 267, 404, 452, 479, 522, 549, 777, 917
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 871
MaeI CTAG 2 cut(s) 102, 705
MaeII ACGT 2 cut(s) 403, 471
MaeIII GTNAC 1 cut(s) 739
MalI GATC 5 cut(s) 447, 600, 622, 672, 831
MboI GATC 5 cut(s) 445, 598, 620, 670, 829
MboII GAAGA 1 cut(s) 46
MflI RGATCY 2 cut(s) 620, 670
MhlI GDGCHC 1 cut(s) 951
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 8 cut(s) 145, 325, 400, 428, 565, 568, 640, 847
MseI TTAA 5 cut(s) 92, 489, 660, 716, 795
MspR9I CCNGG 2 cut(s) 467, 537
MvaI CCWGG 2 cut(s) 467, 537
MwoI GCNNNNNNNGC 1 cut(s) 928
NcoI CCATGG 1 cut(s) 682
NdeII GATC 5 cut(s) 445, 598, 620, 670, 829
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 4 cut(s) 519, 583, 686, 845
NlaIV GGNNCC 3 cut(s) 130, 319, 672
NspI RCATGY 1 cut(s) 845
PfeI GAWTC 5 cut(s) 82, 302, 371, 422, 711
PfoI TCCNGGA 1 cut(s) 465
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Ppu21I YACGTR 1 cut(s) 404
Psp6I CCWGG 2 cut(s) 465, 535
PspGI CCWGG 2 cut(s) 465, 535
PspN4I GGNNCC 3 cut(s) 130, 319, 672
PspPI GGNCC 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 2 cut(s) 620, 670
RsaI GTAC 3 cut(s) 258, 402, 810
RsaNI GTAC 3 cut(s) 257, 401, 809
SaqAI TTAA 5 cut(s) 92, 489, 660, 716, 795
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 5 cut(s) 445, 598, 620, 670, 829
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 2 cut(s) 467, 537
SduI GDGCHC 1 cut(s) 951
SfaNI GCATC 1 cut(s) 871
SspI AATATT 1 cut(s) 732
SspMI CTAG 2 cut(s) 102, 705
StyD4I CCNGG 2 cut(s) 465, 535
StyI CCWWGG 3 cut(s) 428, 642, 682
TaaI ACNGT 2 cut(s) 739, 786
TaiI ACGT 2 cut(s) 406, 474
TaqI TCGA 2 cut(s) 177, 781
TfiI GAWTC 5 cut(s) 82, 302, 371, 422, 711
Tru1I TTAA 5 cut(s) 92, 489, 660, 716, 795
Tru9I TTAA 5 cut(s) 92, 489, 660, 716, 795
TscAI CASTG 3 cut(s) 154, 235, 823
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 46
TspGWI ACGGA 1 cut(s) 931
TspRI CASTG 3 cut(s) 154, 235, 823
XagI CCTNNNNNAGG 1 cut(s) 432
XapI RAATTY 5 cut(s) 190, 277, 496, 605, 662
XceI RCATGY 1 cut(s) 845
XspI CTAG 2 cut(s) 102, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.