Rmu_sc0007131.1_g000004

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007131.1
OG0000148
Physical Location & Seq
Forward (+)
13159 .. 13755
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007131.1_g000004.1.cds

Sequence Viewer

Length: 597 bp
atgaatgaggaaaaaggaaacatctctgtcaagctcgtagtgagtaaatcaaagaatgtggtctgctatgcagaagtacgagaagattttgttaacttgatcttcagtttcttgactcttccacttgggtatatattaaagcagatgctggattccccttggaaaggatgtattgatcagttgtgcaagggtgtcctggattttgatgagcaattttttaagtcaaattaccacaaggaattgctatgcaatcccaaacttgttcctgggttcagctatgagaacaatcttttaggaattgaggaggccgtgtactataagttttctggtcgtaagttgactgctgatagatccattatcccttctatgtccttggaggcacttaaagctaaatttttggatcccaaatcccagggtgatgacaatagaaatgctaagggattcttatatgaaccagcaattttcacagtaactgataatttggatttaaggccagtatctccaatctttcaattgtctgttcttaatgatttgaaggtacatatcactgttatagaggaccgaactgtacatgttggcaataacgaggtgagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

198

Amino Acids

22.46

Weight (kDa)

5.67

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 345, 395, 408
AcsI RAATTY 1 cut(s) 392
AcuI CTGAAG 1 cut(s) 88
AfaI GTAC 4 cut(s) 78, 314, 540, 570
AfiI CCNNNNNNNGG 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 2 cut(s) 512, 535
AjnI CCWGG 3 cut(s) 195, 265, 411
AluBI AGCT 3 cut(s) 34, 276, 389
AluI AGCT 3 cut(s) 34, 276, 389
AlwI GGATC 3 cut(s) 345, 395, 408
AlwNI CAGNNNCTG 2 cut(s) 148, 473
AoxI GGCC 2 cut(s) 306, 491
ApoI RAATTY 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 559
AsuHPI GGTGA 1 cut(s) 428
AvaII GGWCC 1 cut(s) 559
BamHI GGATCC 1 cut(s) 400
BceAI ACGGC 1 cut(s) 293
BciT130I CCWGG 3 cut(s) 197, 267, 413
BclI TGATCA 1 cut(s) 175
Bme1390I CCNGG 3 cut(s) 197, 267, 413
Bme18I GGWCC 1 cut(s) 559
BmgT120I GGNCC 1 cut(s) 559
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 3 cut(s) 197, 267, 413
BmsI GCATC 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 435
BsaJI CCNNGG 5 cut(s) 158, 266, 372, 411, 412
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 494
BseBI CCWGG 3 cut(s) 197, 267, 413
BseDI CCNNGG 5 cut(s) 158, 266, 372, 411, 412
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 1 cut(s) 317
BshFI GGCC 2 cut(s) 308, 493
BslI CCNNNNNNNGG 1 cut(s) 164
BsnI GGCC 2 cut(s) 308, 493
Bsp1407I TGTACA 1 cut(s) 568
Bsp143I GATC 4 cut(s) 99, 175, 350, 400
BspANI GGCC 2 cut(s) 308, 493
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 3 cut(s) 345, 395, 408
BsrGI TGTACA 1 cut(s) 568
BsrI ACTGG 1 cut(s) 494
BssECI CCNNGG 5 cut(s) 158, 266, 372, 411, 412
BssMI GATC 4 cut(s) 99, 175, 350, 400
BssT1I CCWWGG 2 cut(s) 158, 372
Bst2UI CCWGG 3 cut(s) 197, 267, 413
Bst4CI ACNGT 3 cut(s) 469, 550, 568
Bst6I CTCTTC 1 cut(s) 123
BstAUI TGTACA 1 cut(s) 568
BstDEI CTNAG 1 cut(s) 435
BstENI CCTNNNNNAGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 4 cut(s) 102, 178, 353, 403
BstMBI GATC 4 cut(s) 99, 175, 350, 400
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 3 cut(s) 197, 267, 413
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 3 cut(s) 195, 265, 411
BstX2I RGATCY 2 cut(s) 350, 400
BstYI RGATCY 2 cut(s) 350, 400
BsuRI GGCC 2 cut(s) 308, 493
BtsCI GGATG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 546
CaiI CAGNNNCTG 2 cut(s) 148, 473
Cfr13I GGNCC 1 cut(s) 559
Csp6I GTAC 4 cut(s) 77, 313, 539, 569
CspCI CAANNNNNGTGG 2 cut(s) 39, 74
CviAII CATG 1 cut(s) 572
CviJI RGCY 5 cut(s) 34, 276, 308, 389, 493
CviKI_1 RGCY 5 cut(s) 34, 276, 308, 389, 493
CviQI GTAC 4 cut(s) 77, 313, 539, 569
DdeI CTNAG 1 cut(s) 435
DpnI GATC 4 cut(s) 101, 177, 352, 402
DpnII GATC 4 cut(s) 99, 175, 350, 400
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 158, 372
Eco47I GGWCC 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 88
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoRII CCWGG 3 cut(s) 195, 265, 411
EcoT14I CCWWGG 2 cut(s) 158, 372
ErhI CCWWGG 2 cut(s) 158, 372
FaeI CATG 1 cut(s) 575
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FatI CATG 1 cut(s) 571
FbaI TGATCA 1 cut(s) 175
FokI GGATG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 308, 493
Hin1II CATG 1 cut(s) 575
HincII GTYRAC 2 cut(s) 94, 339
HindII GTYRAC 2 cut(s) 94, 339
HinfI GANTC 3 cut(s) 115, 152, 441
HpaI GTTAAC 1 cut(s) 94
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 3 cut(s) 94, 313, 339
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 3 cut(s) 94, 313, 339
HpyAV CCTTC 2 cut(s) 372, 529
HpyCH4III ACNGT 3 cut(s) 469, 550, 568
HpyCH4V TGCA 3 cut(s) 71, 186, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 1 cut(s) 435
Hsp92II CATG 1 cut(s) 575
Ksp22I TGATCA 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 4 cut(s) 99, 175, 350, 400
LweI GCATC 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 469
MalI GATC 4 cut(s) 101, 177, 352, 402
MboI GATC 4 cut(s) 99, 175, 350, 400
MboII GAAGA 3 cut(s) 94, 95, 110
MfeI CAATTG 1 cut(s) 512
MflI RGATCY 2 cut(s) 350, 400
MluCI AATT 8 cut(s) 212, 226, 239, 297, 392, 459, 478, 512
MlyI GAGTC 1 cut(s) 109
MnlI CCTC 5 cut(s) 295, 298, 370, 550, 580
MseI TTAA 6 cut(s) 93, 137, 219, 384, 488, 525
MspR9I CCNGG 3 cut(s) 197, 267, 413
MunI CAATTG 1 cut(s) 512
MvaI CCWGG 3 cut(s) 197, 267, 413
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 4 cut(s) 99, 175, 350, 400
NlaIII CATG 1 cut(s) 575
NlaIV GGNNCC 1 cut(s) 402
NspI RCATGY 1 cut(s) 575
PasI CCCWGGG 1 cut(s) 412
PciI ACATGT 1 cut(s) 571
PfeI GAWTC 2 cut(s) 152, 441
PfoI TCCNGGA 1 cut(s) 195
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PscI ACATGT 1 cut(s) 571
Psp6I CCWGG 3 cut(s) 195, 265, 411
PspGI CCWGG 3 cut(s) 195, 265, 411
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 1 cut(s) 559
PstNI CAGNNNCTG 2 cut(s) 148, 473
PsuI RGATCY 2 cut(s) 350, 400
RsaI GTAC 4 cut(s) 78, 314, 540, 570
RsaNI GTAC 4 cut(s) 77, 313, 539, 569
SaqAI TTAA 6 cut(s) 93, 137, 219, 384, 488, 525
Sau3AI GATC 4 cut(s) 99, 175, 350, 400
Sau96I GGNCC 1 cut(s) 559
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 3 cut(s) 197, 267, 413
SetI ASST 5 cut(s) 36, 278, 391, 540, 591
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 1 cut(s) 559
Sse9I AATT 8 cut(s) 212, 226, 239, 297, 392, 459, 478, 512
StyD4I CCNGG 3 cut(s) 195, 265, 411
StyI CCWWGG 2 cut(s) 158, 372
TaaI ACNGT 3 cut(s) 469, 550, 568
TaqII GACCGA 1 cut(s) 576
TasI AATT 8 cut(s) 212, 226, 239, 297, 392, 459, 478, 512
TatI WGTACW 2 cut(s) 312, 568
TfiI GAWTC 2 cut(s) 152, 441
Tru1I TTAA 6 cut(s) 93, 137, 219, 384, 488, 525
Tru9I TTAA 6 cut(s) 93, 137, 219, 384, 488, 525
TscAI CASTG 1 cut(s) 553
TspDTI ATGAA 2 cut(s) 17, 465
TspRI CASTG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 559
XagI CCTNNNNNAGG 1 cut(s) 162
XapI RAATTY 1 cut(s) 392
XceI RCATGY 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.