Rmu_sc0001016.1_g000006

BEST Arabidopsis thaliana protein match is Protein of

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001016.1
Physical Location & Seq
Forward (+)
38138 .. 38539
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001016.1_g000006.1.cds

Sequence Viewer

Length: 402 bp
atgccttcgtcagaaactcttctgaagcttaaatcacaaccaaacttgagcaatgaatatccaaatcaaggaatatgtattgaacctcaaacagtaggaggctgtatgaatgaggaagacaccatttctgtgaagcttattatttgcaaatctcagaagattgtttgttatgcagaagtaggggaggattttgtcaatttacttttcagtttcctgatcgttccacttgggtttataataaaacagatccaggataggtcatcctctttgaaaggaagcattgagcagctgtacaagagtgtccaggatcttgatgatgaattcttcaaatcaaattaccagaaggaattttactcaatccgaagctttaccctggtttttgatatgagaaccgtcttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

15.23

Weight (kDa)

4.83

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
AclWI GGATC 2 cut(s) 241, 315
AcsI RAATTY 2 cut(s) 320, 347
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 3 cut(s) 83, 271, 328
AjnI CCWGG 3 cut(s) 249, 303, 372
AluBI AGCT 4 cut(s) 28, 136, 289, 366
AluI AGCT 4 cut(s) 28, 136, 289, 366
AlwI GGATC 2 cut(s) 241, 315
ApeKI GCWGC 1 cut(s) 286
ApoI RAATTY 2 cut(s) 320, 347
Asp700I GAANNNNTTC 1 cut(s) 18
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 298
BciT130I CCWGG 3 cut(s) 251, 305, 374
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 3 cut(s) 251, 305, 374
BmrFI CCNGG 3 cut(s) 251, 305, 374
BpiI GAAGAC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 58
BseBI CCWGG 3 cut(s) 251, 305, 374
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 68
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 3 cut(s) 216, 246, 307
BspCNI CTCAG 1 cut(s) 166
BspPI GGATC 2 cut(s) 241, 315
BsrDI GCAATG 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 3 cut(s) 216, 246, 307
Bst2UI CCWGG 3 cut(s) 251, 305, 374
Bst4CI ACNGT 2 cut(s) 94, 394
Bst6I CTCTTC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 260
BstKTI GATC 3 cut(s) 219, 249, 310
BstMBI GATC 3 cut(s) 216, 246, 307
BstNI CCWGG 3 cut(s) 251, 305, 374
BstSCI CCNGG 3 cut(s) 249, 303, 372
BstV1I GCAGC 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 2 cut(s) 246, 307
BstYI RGATCY 2 cut(s) 246, 307
BtsCI GGATG 1 cut(s) 260
Csp6I GTAC 1 cut(s) 292
CviJI RGCY 5 cut(s) 28, 102, 136, 289, 366
CviKI_1 RGCY 5 cut(s) 28, 102, 136, 289, 366
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 153
DpnI GATC 3 cut(s) 218, 248, 309
DpnII GATC 3 cut(s) 216, 246, 307
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 3 cut(s) 249, 303, 372
FaiI YATR 5 cut(s) 76, 107, 171, 236, 386
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 287
HindIII AAGCTT 3 cut(s) 26, 134, 364
Hpy188I TCNGA 4 cut(s) 13, 24, 156, 362
Hpy188III TCNNGA 2 cut(s) 214, 311
HpyAV CCTTC 2 cut(s) 15, 337
HpyCH4III ACNGT 2 cut(s) 94, 394
HpyCH4V TGCA 2 cut(s) 147, 173
HpyF3I CTNAG 1 cut(s) 153
Kzo9I GATC 3 cut(s) 216, 246, 307
LpnPI CCDG 8 cut(s) 227, 236, 263, 290, 317, 353, 359, 386
Lsp1109I GCAGC 1 cut(s) 298
MalI GATC 3 cut(s) 218, 248, 309
MboI GATC 3 cut(s) 216, 246, 307
MboII GAAGA 4 cut(s) 11, 128, 169, 316
MflI RGATCY 2 cut(s) 246, 307
MluCI AATT 4 cut(s) 196, 320, 334, 347
MnlI CCTC 5 cut(s) 92, 96, 106, 178, 274
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 289
MspR9I CCNGG 3 cut(s) 251, 305, 374
MvaI CCWGG 3 cut(s) 251, 305, 374
NdeII GATC 3 cut(s) 216, 246, 307
PdmI GAANNNNTTC 1 cut(s) 18
PfoI TCCNGGA 2 cut(s) 249, 303
PkrI GCNGC 1 cut(s) 288
PsiI TTATAA 1 cut(s) 236
Psp6I CCWGG 3 cut(s) 249, 303, 372
PspGI CCWGG 3 cut(s) 249, 303, 372
PsuI RGATCY 2 cut(s) 246, 307
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 3 cut(s) 216, 246, 307
ScrFI CCNGG 3 cut(s) 251, 305, 374
SetI ASST 6 cut(s) 30, 88, 138, 260, 291, 368
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 4 cut(s) 196, 320, 334, 347
StyD4I CCNGG 3 cut(s) 249, 303, 372
TaaI ACNGT 2 cut(s) 94, 394
TasI AATT 4 cut(s) 196, 320, 334, 347
TatI WGTACW 1 cut(s) 291
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 3 cut(s) 69, 122, 333
XapI RAATTY 2 cut(s) 320, 347
XmnI GAANNNNTTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.