Rroxscaffold_1G00013620

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000148
Physical Location & Seq
Reverse (-)
16750111 .. 16752271
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013620.1

Sequence Viewer

Length: 1089 bp
ATGGCTGATGAATCTAGAATTAGTTTGAAGGCCTTTGTGAACAAGGGGAACAACAGAATCATGTTCGTAGAGTCTGGTTGTGATTTTGTTGAGACACTATTCAGTTTCTTGTCAATCCCCATAGGAACTATTATCAGGCTTGCCCGTAGTCACTCAGTGCCGGTGGAAATAGGTTGCATGAACAATTTGTATGCAAGTGTTGAGAAACTTGATGTGCAGCATTTCCGGACTGAAGCTTGTAAGGACATGCTGCTATGCCCCCACAGTCGAGCAGGAGCGACTTTGAAGAACCTCAAATTCAACATTGAGGACCATGAGACCACGCGGTACTTTAGGTGCTCTAATGTGTCTTGCCAAAGCTCCCCAACCAAGATTAGCTATTACAGTAGTGTTCGTTGTCATTGTGGATATCTAATGGACAGAGAGATCAACCTTTCAGTTAAAGTTGGTGATGAGGTGTTTGTAAAAGGACTATCCAGACTTATTATCAGCGATCATTTACAAGTCATGGCCCCAGGAACTCCAGCAATTTCTGTTTTCTTTGAGAAGCTTGGAAGCATGAATTCGAATTCTATTGAGGAAGTGACTATGAACATTGGAGTTGATGAGGTTTTGAATCTGCTTTTGTGCTCATTTGTATCAAAGACACCCCTGACTGATATACTTCTGAAGAATACTGGTAATCAACCTATGCACACAGTCTCTTATACACAAATGCTGGGAGACACAATGGGTGATGGAGCTAACATGTCTGTGAAGCTTATAGTTAGCAAGTCTAAGAAGGTGGGAATTGGAATGGCATCATATCGTTTTGAGTCGGCTGAAATTGTGGACCCCAAATCTCACGCTAGTGAAAAGGTTTGTGATCAAGGATTCTTAAAAGGGCCAGCCATGTTTATGGTAACTGACAGTCTTGCTGTAACTTCGATATCTCCCATCCTTGGGCTGTCTATTCTGAATGAAATGAATGTACCTATCACTGATATTGAGGTGAAAACAGTCAATGTGGGTAAAGAGGAGGCTTTCGGTCTTTTGGTGGCGTCTTTTGTTTCTGATCGCTCTGCCCTTAACAGTGTTTTCCTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

362

Amino Acids

39.66

Weight (kDa)

6.09

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 4 - 261 6.4e-76 Protein of unknown function (DUF674)
DUF674 PF05056 273 - 339 2.1e-14 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 325
AccIII TCCGGA 1 cut(s) 225
AciI CCGC 1 cut(s) 325
AcsI RAATTY 3 cut(s) 296, 562, 568
AcuI CTGAAG 2 cut(s) 252, 689
AcyI GRCGYC 1 cut(s) 1040
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 2 cut(s) 329, 972
AfiI CCNNNNNNNGG 2 cut(s) 941, 942
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 4 cut(s) 28, 286, 301, 616
AjnI CCWGG 1 cut(s) 514
AleI CACNNNNGTG 1 cut(s) 849
AluBI AGCT 6 cut(s) 236, 360, 378, 550, 743, 760
AluI AGCT 6 cut(s) 236, 360, 378, 550, 743, 760
Alw21I GWGCWC 2 cut(s) 341, 632
Alw26I GTCTC 4 cut(s) 86, 311, 706, 717
Aor13HI TCCGGA 1 cut(s) 225
AoxI GGCC 3 cut(s) 30, 510, 884
ApeKI GCWGC 2 cut(s) 217, 250
ApoI RAATTY 3 cut(s) 296, 562, 568
AspS9I GGNCC 4 cut(s) 310, 511, 832, 884
AsuHPI GGTGA 3 cut(s) 461, 746, 1003
AsuII TTCGAA 1 cut(s) 566
AvaII GGWCC 2 cut(s) 310, 832
Bbv12I GWGCWC 2 cut(s) 341, 632
BbvI GCAGC 2 cut(s) 229, 237
BccI CCATC 2 cut(s) 731, 944
BciT130I CCWGG 1 cut(s) 516
BclI TGATCA 1 cut(s) 865
BcoDI GTCTC 4 cut(s) 86, 311, 706, 717
BfaI CTAG 2 cut(s) 15, 849
BisI GCNGC 2 cut(s) 218, 251
BlsI GCNGC 2 cut(s) 219, 252
Bme1390I CCNGG 1 cut(s) 516
Bme18I GGWCC 2 cut(s) 310, 832
BmgT120I GGNCC 4 cut(s) 310, 511, 832, 884
BmiI GGNNCC 2 cut(s) 513, 834
BmrFI CCNGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 809
BpmI CTGGAG 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 1040
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 3 cut(s) 514, 940, 1081
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 2 cut(s) 941, 942
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 682
BseAI TCCGGA 1 cut(s) 225
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 3 cut(s) 514, 940, 1081
BseGI GGATG 1 cut(s) 936
BseLI CCNNNNNNNGG 2 cut(s) 941, 942
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 682
BseRI GAGGAG 1 cut(s) 1031
BseXI GCAGC 2 cut(s) 229, 237
BseYI CCCAGC 1 cut(s) 718
BsgI GTGCAG 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 325
BshFI GGCC 3 cut(s) 32, 512, 886
BsiHKAI GWGCWC 2 cut(s) 341, 632
BsiSI CCGG 2 cut(s) 161, 226
BslI CCNNNNNNNGG 2 cut(s) 941, 942
BsmAI GTCTC 4 cut(s) 86, 311, 706, 717
BsnI GGCC 3 cut(s) 32, 512, 886
Bso31I GGTCTC 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 566
Bsp1286I GDGCHC 2 cut(s) 341, 632
Bsp13I TCCGGA 1 cut(s) 225
Bsp143I GATC 4 cut(s) 426, 493, 865, 1054
BspACI CCGC 1 cut(s) 325
BspANI GGCC 3 cut(s) 32, 512, 886
BspCNI CTCAG 1 cut(s) 167
BspEI TCCGGA 1 cut(s) 225
BspFNI CGCG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 513, 834
BspT104I TTCGAA 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 682
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 514, 940, 1081
BssMI GATC 4 cut(s) 426, 493, 865, 1054
BssNI GRCGYC 1 cut(s) 1040
BssT1I CCWWGG 2 cut(s) 940, 1081
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 6 cut(s) 266, 386, 700, 911, 1000, 1073
BstACI GRCGYC 1 cut(s) 1040
BstBI TTCGAA 1 cut(s) 566
BstC8I GCNNGC 2 cut(s) 141, 888
BstDEI CTNAG 2 cut(s) 154, 777
BstF5I GGATG 1 cut(s) 936
BstFNI CGCG 1 cut(s) 325
BstKTI GATC 4 cut(s) 429, 496, 868, 1057
BstMAI GTCTC 4 cut(s) 86, 311, 706, 717
BstMBI GATC 4 cut(s) 426, 493, 865, 1054
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 2 cut(s) 250, 751
BstSCI CCNGG 1 cut(s) 514
BstUI CGCG 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 229, 237
BstXI CCANNNNNNTGG 1 cut(s) 898
BsuRI GGCC 3 cut(s) 32, 512, 886
BtsCI GGATG 1 cut(s) 936
BtsIMutI CAGTG 3 cut(s) 162, 978, 1078
Cac8I GCNNGC 2 cut(s) 141, 888
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 4 cut(s) 310, 511, 832, 884
CseI GACGC 1 cut(s) 1029
Csp6I GTAC 2 cut(s) 328, 971
CviAII CATG 8 cut(s) 61, 178, 247, 314, 508, 559, 748, 892
CviQI GTAC 2 cut(s) 328, 971
DdeI CTNAG 2 cut(s) 154, 777
DpnI GATC 4 cut(s) 428, 495, 867, 1056
DpnII GATC 4 cut(s) 426, 493, 865, 1054
DraIII CACNNNGTG 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 940, 1081
Eco147I AGGCCT 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 311
Eco32I GATATC 2 cut(s) 410, 930
Eco47I GGWCC 2 cut(s) 310, 832
Eco57I CTGAAG 2 cut(s) 252, 689
EcoRI GAATTC 2 cut(s) 562, 568
EcoRII CCWGG 1 cut(s) 514
EcoRV GATATC 2 cut(s) 410, 930
EcoT14I CCWWGG 2 cut(s) 940, 1081
ErhI CCWWGG 2 cut(s) 940, 1081
FaeI CATG 8 cut(s) 64, 181, 250, 317, 511, 562, 751, 895
FatI CATG 8 cut(s) 60, 177, 246, 313, 507, 558, 747, 891
FbaI TGATCA 1 cut(s) 865
Fnu4HI GCNGC 2 cut(s) 218, 251
FokI GGATG 1 cut(s) 923
Fsp4HI GCNGC 2 cut(s) 218, 251
FspBI CTAG 2 cut(s) 15, 849
GluI GCNGC 2 cut(s) 218, 251
GsaI CCCAGC 1 cut(s) 722
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 3 cut(s) 32, 512, 886
HapII CCGG 2 cut(s) 161, 226
HgaI GACGC 1 cut(s) 1029
Hin1I GRCGYC 1 cut(s) 1040
Hin1II CATG 8 cut(s) 64, 181, 250, 317, 511, 562, 751, 895
HindIII AAGCTT 3 cut(s) 234, 548, 758
HinfI GANTC 6 cut(s) 11, 57, 71, 616, 815, 873
HpaII CCGG 2 cut(s) 161, 226
HphI GGTGA 3 cut(s) 461, 746, 1003
Hpy166II GTNNAC 2 cut(s) 40, 832
Hpy188I TCNGA 3 cut(s) 669, 957, 1054
Hpy188III TCNNGA 3 cut(s) 15, 226, 477
Hpy8I GTNNAC 2 cut(s) 40, 832
HpyAV CCTTC 2 cut(s) 22, 775
HpyCH4III ACNGT 6 cut(s) 266, 386, 700, 911, 1000, 1073
HpyCH4V TGCA 4 cut(s) 177, 194, 217, 694
HpyF3I CTNAG 2 cut(s) 154, 777
Hsp92I GRCGYC 1 cut(s) 1040
Hsp92II CATG 8 cut(s) 64, 181, 250, 317, 511, 562, 751, 895
Kpn2I TCCGGA 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 865
Kzo9I GATC 4 cut(s) 426, 493, 865, 1054
LmnI GCTCC 3 cut(s) 275, 365, 740
Lsp1109I GCAGC 2 cut(s) 229, 237
LweI GCATC 1 cut(s) 809
MaeI CTAG 2 cut(s) 15, 849
MaeIII GTNAC 4 cut(s) 149, 583, 901, 919
MalI GATC 4 cut(s) 428, 495, 867, 1056
MboI GATC 4 cut(s) 426, 493, 865, 1054
MboII GAAGA 2 cut(s) 298, 682
MhlI GDGCHC 2 cut(s) 341, 632
MluCI AATT 8 cut(s) 18, 184, 296, 528, 562, 568, 789, 825
MlyI GAGTC 2 cut(s) 80, 824
MnlI CCTC 8 cut(s) 301, 302, 448, 571, 601, 982, 1009, 1012
MroI TCCGGA 1 cut(s) 225
MseI TTAA 3 cut(s) 441, 878, 1068
MslI CAYNNNNRTG 3 cut(s) 752, 849, 896
MspI CCGG 2 cut(s) 161, 226
MspR9I CCNGG 1 cut(s) 516
MvaI CCWGG 1 cut(s) 516
MvnI CGCG 1 cut(s) 325
NdeII GATC 4 cut(s) 426, 493, 865, 1054
NlaIII CATG 8 cut(s) 64, 181, 250, 317, 511, 562, 751, 895
NlaIV GGNNCC 2 cut(s) 513, 834
NmuCI GTSAC 2 cut(s) 149, 583
NspI RCATGY 2 cut(s) 250, 751
NspV TTCGAA 1 cut(s) 566
OliI CACNNNNGTG 1 cut(s) 849
PceI AGGCCT 1 cut(s) 32
PciI ACATGT 1 cut(s) 747
PfeI GAWTC 4 cut(s) 11, 57, 616, 873
PkrI GCNGC 2 cut(s) 219, 252
PleI GAGTC 2 cut(s) 79, 823
PpsI GAGTC 2 cut(s) 79, 823
PscI ACATGT 1 cut(s) 747
Psp6I CCWGG 1 cut(s) 514
PspFI CCCAGC 1 cut(s) 718
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 2 cut(s) 513, 834
PspPI GGNCC 4 cut(s) 310, 511, 832, 884
RsaI GTAC 2 cut(s) 329, 972
RsaNI GTAC 2 cut(s) 328, 971
RseI CAYNNNNRTG 3 cut(s) 752, 849, 896
SaqAI TTAA 3 cut(s) 441, 878, 1068
SatI GCNGC 2 cut(s) 218, 251
Sau3AI GATC 4 cut(s) 426, 493, 865, 1054
Sau96I GGNCC 4 cut(s) 310, 511, 832, 884
SchI GAGTC 2 cut(s) 80, 824
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 2 cut(s) 341, 632
SfaNI GCATC 1 cut(s) 809
SfuI TTCGAA 1 cut(s) 566
SinI GGWCC 2 cut(s) 310, 832
SmiMI CAYNNNNRTG 3 cut(s) 752, 849, 896
Sse9I AATT 8 cut(s) 18, 184, 296, 528, 562, 568, 789, 825
SseBI AGGCCT 1 cut(s) 32
SsiI CCGC 1 cut(s) 325
SspMI CTAG 2 cut(s) 15, 849
StuI AGGCCT 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 2 cut(s) 940, 1081
TaaI ACNGT 6 cut(s) 266, 386, 700, 911, 1000, 1073
TaqI TCGA 3 cut(s) 268, 566, 926
TaqII GACCGA 1 cut(s) 1016
TasI AATT 8 cut(s) 18, 184, 296, 528, 562, 568, 789, 825
TfiI GAWTC 4 cut(s) 11, 57, 616, 873
Tru1I TTAA 3 cut(s) 441, 878, 1068
Tru9I TTAA 3 cut(s) 441, 878, 1068
TscAI CASTG 3 cut(s) 162, 985, 1078
TseFI GTSAC 2 cut(s) 149, 583
TseI GCWGC 2 cut(s) 217, 250
Tsp45I GTSAC 2 cut(s) 149, 583
TspDTI ATGAA 6 cut(s) 24, 194, 575, 605, 975, 980
TspRI CASTG 3 cut(s) 162, 985, 1078
VpaK11BI GGWCC 2 cut(s) 310, 832
XapI RAATTY 3 cut(s) 296, 562, 568
XbaI TCTAGA 1 cut(s) 14
XceI RCATGY 2 cut(s) 250, 751
XspI CTAG 2 cut(s) 15, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.