MD03G1079100.v1.1

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000148
Physical Location & Seq
Reverse (-)
6393009 .. 6393679
671 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1079100.v1.1.491

Sequence Viewer

Length: 405 bp
ATGAGTCTTTTAGGAACTGAGGAGATCTCGTATTACTATGTGGATGACAAGTTGATTGATGATAGATCCCTTCTACCTTCTAATTGTTCATCACCGGAGTCATATAAACTCACAGTTGTTAATCCGAAACCCTACATCAATCAGAATCAAAGTAGTGATCGTGGATTTTTGAAGGGACCTGCAGTGTTTTTAGTAACTGACAATCTAGTTGTAAGGCCGAAATCTCGGATCTTTCTACTGCATGTTCTTAAATCTTCTAATGTGCCCTTGACAGATGTTGAGTATCAAACAGTGCATGTTGGTACGAAGGAGGCTTTGTGTCCTTTGGTAGCATCTTTTGTTGGTGAATCTGCTCTATCCAATGTCGTCCTGAGGAATCGTGGGGAGCCGAAGCAAGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

135

Amino Acids

14.93

Weight (kDa)

6.09

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 28 - 102 1.5e-13 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 187
AclWI GGATC 2 cut(s) 60, 236
AfaI GTAC 1 cut(s) 304
AgsI TTSAA 1 cut(s) 172
AlwI GGATC 2 cut(s) 60, 236
AoxI GGCC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 84, 356
AvaII GGWCC 1 cut(s) 176
AxyI CCTNAGG 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 267
BfaI CTAG 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 187
BglII AGATCT 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 177, 387
BmsI GCATC 1 cut(s) 341
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 302, 332
Bse21I CCTNAGG 1 cut(s) 371
BseGI GGATG 1 cut(s) 49
BseMII CTCAG 2 cut(s) 9, 362
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 267
BshFI GGCC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 4 cut(s) 24, 65, 157, 228
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 2 cut(s) 10, 363
BspLI GGNNCC 2 cut(s) 177, 387
BspMAI CTGCAG 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 2 cut(s) 60, 236
BssMI GATC 4 cut(s) 24, 65, 157, 228
Bst4CI ACNGT 2 cut(s) 115, 292
BstDEI CTNAG 2 cut(s) 18, 371
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 4 cut(s) 27, 68, 160, 231
BstMBI GATC 4 cut(s) 24, 65, 157, 228
BstNSI RCATGY 2 cut(s) 245, 299
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 267
BstX2I RGATCY 3 cut(s) 24, 65, 228
BstYI RGATCY 3 cut(s) 24, 65, 228
Bsu36I CCTNAGG 1 cut(s) 371
BsuRI GGCC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 297
BveI ACCTGC 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 303
CviAII CATG 2 cut(s) 242, 296
CviJI RGCY 3 cut(s) 217, 314, 388
CviKI_1 RGCY 3 cut(s) 217, 314, 388
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 2 cut(s) 18, 371
DpnI GATC 4 cut(s) 26, 67, 159, 230
DpnII GATC 4 cut(s) 24, 65, 157, 228
Eco47I GGWCC 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 176
FaeI CATG 2 cut(s) 245, 299
FaiI YATR 5 cut(s) 39, 103, 105, 243, 297
FaqI GGGAC 1 cut(s) 189
FatI CATG 2 cut(s) 241, 295
FokI GGATG 1 cut(s) 56
FspBI CTAG 1 cut(s) 206
HaeIII GGCC 1 cut(s) 217
HapII CCGG 1 cut(s) 95
Hin1II CATG 2 cut(s) 245, 299
HinfI GANTC 5 cut(s) 4, 98, 145, 347, 376
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 84, 356
Hpy188I TCNGA 3 cut(s) 126, 144, 228
Hpy188III TCNNGA 1 cut(s) 370
HpyAV CCTTC 4 cut(s) 80, 87, 166, 301
HpyCH4III ACNGT 2 cut(s) 115, 292
HpyCH4V TGCA 3 cut(s) 182, 241, 295
HpyF3I CTNAG 2 cut(s) 18, 371
Hsp92II CATG 2 cut(s) 245, 299
Kzo9I GATC 4 cut(s) 24, 65, 157, 228
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 3 cut(s) 108, 192, 383
LweI GCATC 1 cut(s) 341
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 193
MalI GATC 4 cut(s) 26, 67, 159, 230
MboI GATC 4 cut(s) 24, 65, 157, 228
MboII GAAGA 1 cut(s) 246
MflI RGATCY 3 cut(s) 24, 65, 228
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 1 cut(s) 82
MlyI GAGTC 2 cut(s) 13, 107
MnlI CCTC 3 cut(s) 13, 304, 366
MseI TTAA 2 cut(s) 120, 249
MspI CCGG 1 cut(s) 95
NdeII GATC 4 cut(s) 24, 65, 157, 228
NlaIII CATG 2 cut(s) 245, 299
NlaIV GGNNCC 2 cut(s) 177, 387
NspI RCATGY 2 cut(s) 245, 299
PfeI GAWTC 3 cut(s) 145, 347, 376
PleI GAGTC 2 cut(s) 12, 106
PpsI GAGTC 2 cut(s) 12, 106
PpuMI RGGWCCY 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 177, 387
PspPI GGNCC 1 cut(s) 176
PspPPI RGGWCCY 1 cut(s) 176
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 3 cut(s) 24, 65, 228
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 120, 249
Sau3AI GATC 4 cut(s) 24, 65, 157, 228
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 2 cut(s) 13, 107
SduI GDGCHC 1 cut(s) 267
SetI ASST 2 cut(s) 79, 181
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 176
Sse9I AATT 1 cut(s) 82
SspMI CTAG 1 cut(s) 206
TaaI ACNGT 2 cut(s) 115, 292
TasI AATT 1 cut(s) 82
TfiI GAWTC 3 cut(s) 145, 347, 376
Tru1I TTAA 2 cut(s) 120, 249
Tru9I TTAA 2 cut(s) 120, 249
TscAI CASTG 2 cut(s) 189, 297
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 2 cut(s) 189, 297
VpaK11BI GGWCC 1 cut(s) 176
XceI RCATGY 2 cut(s) 245, 299
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.