Rroxscaffold_1G00013580

Protein of unknown function (DUF674)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
16699669 .. 16700088
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013580.1

Sequence Viewer

Length: 420 bp
ATGCTGGATTCCCCTTGGAAAGGATGTATTGATCAGTTGTGCAAGGGTGTCCTGGATGTTGATGAGCAATTTTTTAAGTCAAATTTCCACAAGGAATTGCCATGCAATCCCAAACTTGTTCCTGGGTTCAGCTATGAGAACAATCTTTTAGGAATTGAGGAGGCTGTGTACCCTAAGTTTTCTGATCGTAAATTTACTGCTGATAGATCCATTATCCCTTCTATGTCCTTGAAGGCACTCAAAGTTAAATTTTTGGATCCCAAATCCCATGGTGATAAAGATAGAAATGCTAGGGGATTCTTAAAAGAAACAGCAATTTTCACAGTAGCTGACAATTTGGATTTAAGGCCAGTATATCCAATCTTTCAACTGTCTATTCTTAATGAATTGAAGGTACATTTCACTGATATTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

15.92

Weight (kDa)

5.92

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 7 - 138 2e-19 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 201, 251, 264
AcsI RAATTY 3 cut(s) 82, 191, 248
AfaI GTAC 2 cut(s) 170, 396
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 3 cut(s) 232, 368, 391
AjnI CCWGG 2 cut(s) 51, 121
AluBI AGCT 2 cut(s) 132, 329
AluI AGCT 2 cut(s) 132, 329
AlwI GGATC 3 cut(s) 201, 251, 264
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 1 cut(s) 347
ApoI RAATTY 3 cut(s) 82, 191, 248
AsuHPI GGTGA 1 cut(s) 284
BamHI GGATCC 1 cut(s) 256
BciT130I CCWGG 2 cut(s) 53, 123
BclI TGATCA 1 cut(s) 31
BfaI CTAG 1 cut(s) 291
Bme1390I CCNGG 2 cut(s) 53, 123
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 2 cut(s) 53, 123
BsaJI CCNNGG 3 cut(s) 14, 122, 268
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 2 cut(s) 53, 123
BseDI CCNNGG 3 cut(s) 14, 122, 268
BseGI GGATG 2 cut(s) 29, 61
BseLI CCNNNNNNNGG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 173
BshFI GGCC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 20
BsnI GGCC 1 cut(s) 349
Bsp143I GATC 4 cut(s) 31, 184, 206, 256
Bsp19I CCATGG 1 cut(s) 268
BspANI GGCC 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 3 cut(s) 201, 251, 264
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 3 cut(s) 14, 122, 268
BssMI GATC 4 cut(s) 31, 184, 206, 256
BssT1I CCWWGG 2 cut(s) 14, 268
Bst2UI CCWGG 2 cut(s) 53, 123
Bst4CI ACNGT 2 cut(s) 325, 372
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 268
BstENI CCTNNNNNAGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 29, 61
BstKTI GATC 4 cut(s) 34, 187, 209, 259
BstMBI GATC 4 cut(s) 31, 184, 206, 256
BstNI CCWGG 2 cut(s) 53, 123
BstSCI CCNGG 2 cut(s) 51, 121
BstX2I RGATCY 2 cut(s) 206, 256
BstYI RGATCY 2 cut(s) 206, 256
BsuRI GGCC 1 cut(s) 349
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 2 cut(s) 29, 61
BtsIMutI CAGTG 1 cut(s) 402
CaiI CAGNNNCTG 1 cut(s) 329
Csp6I GTAC 2 cut(s) 169, 395
CviAII CATG 2 cut(s) 102, 269
CviJI RGCY 4 cut(s) 132, 164, 329, 349
CviKI_1 RGCY 4 cut(s) 132, 164, 329, 349
CviQI GTAC 2 cut(s) 169, 395
DdeI CTNAG 1 cut(s) 174
DpnI GATC 4 cut(s) 33, 186, 208, 258
DpnII GATC 4 cut(s) 31, 184, 206, 256
Eco130I CCWWGG 2 cut(s) 14, 268
EcoNI CCTNNNNNAGG 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 51, 121
EcoT14I CCWWGG 2 cut(s) 14, 268
ErhI CCWWGG 2 cut(s) 14, 268
FaeI CATG 2 cut(s) 105, 272
FaiI YATR 5 cut(s) 103, 135, 224, 270, 355
FatI CATG 2 cut(s) 101, 268
FbaI TGATCA 1 cut(s) 31
FokI GGATG 2 cut(s) 36, 68
FspBI CTAG 1 cut(s) 291
HaeIII GGCC 1 cut(s) 349
Hin1II CATG 2 cut(s) 105, 272
HinfI GANTC 2 cut(s) 8, 297
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 3 cut(s) 226, 228, 385
HpyCH4III ACNGT 2 cut(s) 325, 372
HpyCH4V TGCA 2 cut(s) 42, 105
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 2 cut(s) 105, 272
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 4 cut(s) 31, 184, 206, 256
LpnPI CCDG 5 cut(s) 38, 65, 108, 135, 363
MaeI CTAG 1 cut(s) 291
MalI GATC 4 cut(s) 33, 186, 208, 258
MboI GATC 4 cut(s) 31, 184, 206, 256
MflI RGATCY 2 cut(s) 206, 256
MluCI AATT 9 cut(s) 68, 82, 95, 153, 191, 248, 315, 334, 386
MnlI CCTC 3 cut(s) 151, 154, 406
MseI TTAA 5 cut(s) 75, 246, 302, 344, 381
MspR9I CCNGG 2 cut(s) 53, 123
MvaI CCWGG 2 cut(s) 53, 123
NcoI CCATGG 1 cut(s) 268
NdeII GATC 4 cut(s) 31, 184, 206, 256
NlaIII CATG 2 cut(s) 105, 272
NlaIV GGNNCC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 8, 297
PfoI TCCNGGA 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 51, 121
PspGI CCWGG 2 cut(s) 51, 121
PspN4I GGNNCC 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 206, 256
RsaI GTAC 2 cut(s) 170, 396
RsaNI GTAC 2 cut(s) 169, 395
SaqAI TTAA 5 cut(s) 75, 246, 302, 344, 381
Sau3AI GATC 4 cut(s) 31, 184, 206, 256
ScrFI CCNGG 2 cut(s) 53, 123
SetI ASST 3 cut(s) 134, 331, 396
Sse9I AATT 9 cut(s) 68, 82, 95, 153, 191, 248, 315, 334, 386
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 51, 121
StyI CCWWGG 2 cut(s) 14, 268
TaaI ACNGT 2 cut(s) 325, 372
TasI AATT 9 cut(s) 68, 82, 95, 153, 191, 248, 315, 334, 386
TfiI GAWTC 2 cut(s) 8, 297
Tru1I TTAA 5 cut(s) 75, 246, 302, 344, 381
Tru9I TTAA 5 cut(s) 75, 246, 302, 344, 381
TscAI CASTG 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 399
TspRI CASTG 1 cut(s) 409
XagI CCTNNNNNAGG 1 cut(s) 18
XapI RAATTY 3 cut(s) 82, 191, 248
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.