Rorug05G0192700

Protein of unknown function (DUF674)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
18928712 .. 18930917
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0192700.1

Sequence Viewer

Length: 660 bp
ATGGCGGATGAGGTTGTGTTGTTGGATTTCTGGCCCAGCCCTTTTGGGATGAGGCTGAGGATCGCTCTGGCCGAGAAAGGCATCAAATACGAGTACAAGGACCAGGACCTGAAGAACAAGAGCCCACTCTTGCTGCAGTCGAATCCGGTTCACAAGAAGATCCCGGTTCTCATTCACAATGGCAAAGCGGTCTGCGAGTCCCTTATTGCGCTTCAGTACATTGACGAGGTTTGGAACGATAAGGCTCCACTCTTGCCCTTTGATCCTTACCTTAGATCCCAAGCAAAGTTCTGGGCCGACTTCGTGGACAAGAAGATATATGATTTGGGGAGGAAGGTATGGACAACTAAAGGAGAAGAACAGGAGGCCGCCCTGAAGGAATTCATTGACTGCATTAAGCTGCTAGAAGTGGAGCTTGGAGACAAGTCATTCTTTGGGGGCGAGACCCTCGGATTCGTGGACGTGACACTCGTTCCTTTCTATTCCTGGTTCTCTGTGTATGAGAAATTTGGTAACTTCAGCATAGAGCCAGAGTGCCCAAAGTTCATTGCTTGGGTTAAAAGGTGTTTGGAGAAGGAGAGTGTGTCCAAGTCCCTTCCAGACCAGGATAAGGTCTTTGACATTGTTGTGGATATCAGGAAAAAGCTTGGAATGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

219

Amino Acids

25.32

Weight (kDa)

5.44

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 5 - 76 1.6e-19 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 12 - 76 1.2e-13 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 13 - 76 3.9e-13 Glutathione S-transferase, N-terminal domain
GST_C PF00043 116 - 192 4.2e-06 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 120 - 188 2.8e-09 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 188, 369
AclWI GGATC 4 cut(s) 68, 154, 257, 270
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 380, 506
AcuI CTGAAG 4 cut(s) 131, 197, 395, 502
AfaI GTAC 2 cut(s) 95, 218
AfiI CCNNNNNNNGG 1 cut(s) 610
AjiI CACGTC 1 cut(s) 463
AjnI CCWGG 3 cut(s) 102, 485, 603
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AluBI AGCT 3 cut(s) 400, 415, 646
AluI AGCT 3 cut(s) 400, 415, 646
Alw26I GTCTC 2 cut(s) 414, 437
AlwI GGATC 4 cut(s) 68, 154, 257, 270
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 4 cut(s) 32, 69, 294, 366
ApeKI GCWGC 2 cut(s) 133, 400
ApoI RAATTY 2 cut(s) 380, 506
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 4 cut(s) 33, 100, 106, 294
AsuC2I CCSGG 1 cut(s) 164
AvaII GGWCC 2 cut(s) 100, 106
BaeGI GKGCMC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 125
BbvCI CCTCAGC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 120, 387
BciT130I CCWGG 3 cut(s) 104, 487, 605
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 414, 437
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 134
BisI GCNGC 3 cut(s) 134, 369, 401
BlsI GCNGC 3 cut(s) 135, 370, 402
Bme1390I CCNGG 4 cut(s) 104, 164, 487, 605
Bme18I GGWCC 2 cut(s) 100, 106
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 4 cut(s) 33, 100, 106, 294
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 4 cut(s) 104, 164, 487, 605
BmsI GCATC 1 cut(s) 90
BplI GAGNNNNNCTC 2 cut(s) 49, 81
Bpu10I CCTNAGC 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 448
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 569, 599
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 3 cut(s) 104, 487, 605
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 2 cut(s) 13, 54
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 2 cut(s) 120, 387
BseYI CCCAGC 1 cut(s) 35
BshFI GGCC 4 cut(s) 34, 71, 296, 368
BsiSI CCGG 2 cut(s) 146, 164
BslFI GGGAC 2 cut(s) 184, 577
BslI CCNNNNNNNGG 1 cut(s) 610
BsmAI GTCTC 2 cut(s) 414, 437
BsmFI GGGAC 2 cut(s) 184, 577
BsnI GGCC 4 cut(s) 34, 71, 296, 368
Bso31I GGTCTC 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 125, 539
Bsp143I GATC 4 cut(s) 60, 159, 262, 275
BspACI CCGC 3 cut(s) 5, 188, 369
BspANI GGCC 4 cut(s) 34, 71, 296, 368
BspCNI CTCAG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 246
BspMAI CTGCAG 1 cut(s) 138
BspPI GGATC 4 cut(s) 68, 154, 257, 270
BspTNI GGTCTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 546
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 4 cut(s) 60, 159, 262, 275
Bst2UI CCWGG 3 cut(s) 104, 487, 605
BstDEI CTNAG 2 cut(s) 56, 272
BstF5I GGATG 2 cut(s) 13, 54
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 4 cut(s) 63, 162, 265, 278
BstMAI GTCTC 2 cut(s) 414, 437
BstMBI GATC 4 cut(s) 60, 159, 262, 275
BstNI CCWGG 3 cut(s) 104, 487, 605
BstSCI CCNGG 4 cut(s) 102, 162, 485, 603
BstSFI CTRYAG 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 539
BstV1I GCAGC 2 cut(s) 120, 387
BstX2I RGATCY 2 cut(s) 159, 275
BstYI RGATCY 2 cut(s) 159, 275
BsuRI GGCC 4 cut(s) 34, 71, 296, 368
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 2 cut(s) 13, 54
CaiI CAGNNNCTG 1 cut(s) 109
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 4 cut(s) 33, 100, 106, 294
Csp6I GTAC 2 cut(s) 94, 217
CviQI GTAC 2 cut(s) 94, 217
DdeI CTNAG 2 cut(s) 56, 272
DpnI GATC 4 cut(s) 62, 161, 264, 277
DpnII GATC 4 cut(s) 60, 159, 262, 275
EaeI YGGCCR 1 cut(s) 69
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 437
Eco32I GATATC 1 cut(s) 634
Eco47I GGWCC 2 cut(s) 100, 106
Eco57I CTGAAG 4 cut(s) 131, 197, 395, 502
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 3 cut(s) 102, 485, 603
EcoRV GATATC 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 125
FaiI YATR 5 cut(s) 319, 321, 340, 501, 524
FalI AAGNNNNNCTT 4 cut(s) 399, 431, 416, 448
FaqI GGGAC 2 cut(s) 184, 577
Fnu4HI GCNGC 3 cut(s) 134, 369, 401
FokI GGATG 2 cut(s) 20, 61
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 3 cut(s) 134, 369, 401
FspBI CTAG 1 cut(s) 404
GlaI GCGC 1 cut(s) 210
GluI GCNGC 3 cut(s) 134, 369, 401
GsaI CCCAGC 1 cut(s) 39
HaeIII GGCC 4 cut(s) 34, 71, 296, 368
HapII CCGG 2 cut(s) 146, 164
HhaI GCGC 1 cut(s) 211
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 3 cut(s) 142, 197, 453
HpaII CCGG 2 cut(s) 146, 164
Hpy166II GTNNAC 3 cut(s) 151, 307, 460
Hpy188I TCNGA 1 cut(s) 452
Hpy188III TCNNGA 2 cut(s) 599, 637
Hpy8I GTNNAC 3 cut(s) 151, 307, 460
HpyAV CCTTC 4 cut(s) 328, 370, 568, 605
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 2 cut(s) 136, 393
HpyF3I CTNAG 2 cut(s) 56, 272
HpySE526I ACGT 1 cut(s) 462
HspAI GCGC 1 cut(s) 209
Kzo9I GATC 4 cut(s) 60, 159, 262, 275
LmnI GCTCC 2 cut(s) 250, 412
Lsp1109I GCAGC 2 cut(s) 120, 387
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 404
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 463, 512
MalI GATC 4 cut(s) 62, 161, 264, 277
MboI GATC 4 cut(s) 60, 159, 262, 275
MboII GAAGA 4 cut(s) 124, 169, 325, 368
MflI RGATCY 2 cut(s) 159, 275
MhlI GDGCHC 2 cut(s) 125, 539
MluCI AATT 2 cut(s) 380, 506
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 7 cut(s) 4, 45, 51, 220, 324, 358, 458
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 2 cut(s) 396, 558
MslI CAYNNNNRTG 1 cut(s) 626
MspI CCGG 2 cut(s) 146, 164
MspR9I CCNGG 4 cut(s) 104, 164, 487, 605
MvaI CCWGG 3 cut(s) 104, 487, 605
NciI CCSGG 1 cut(s) 164
NdeII GATC 4 cut(s) 60, 159, 262, 275
NlaIV GGNNCC 1 cut(s) 246
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 463
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 468
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 142, 453
PkrI GCNGC 3 cut(s) 135, 370, 402
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 3 cut(s) 102, 485, 603
PspFI CCCAGC 1 cut(s) 35
PspGI CCWGG 3 cut(s) 102, 485, 603
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 4 cut(s) 33, 100, 106, 294
PspPPI RGGWCCY 1 cut(s) 106
PstI CTGCAG 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 159, 275
RsaI GTAC 2 cut(s) 95, 218
RsaNI GTAC 2 cut(s) 94, 217
RseI CAYNNNNRTG 1 cut(s) 626
SaqAI TTAA 2 cut(s) 396, 558
SatI GCNGC 3 cut(s) 134, 369, 401
Sau3AI GATC 4 cut(s) 60, 159, 262, 275
Sau96I GGNCC 4 cut(s) 33, 100, 106, 294
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 4 cut(s) 104, 164, 487, 605
SduI GDGCHC 2 cut(s) 125, 539
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 1 cut(s) 134
SinI GGWCC 2 cut(s) 100, 106
SmiMI CAYNNNNRTG 1 cut(s) 626
Sse9I AATT 2 cut(s) 380, 506
SsiI CCGC 3 cut(s) 5, 188, 369
SspMI CTAG 1 cut(s) 404
StyD4I CCNGG 4 cut(s) 102, 162, 485, 603
TaiI ACGT 1 cut(s) 465
TaqI TCGA 1 cut(s) 140
TasI AATT 2 cut(s) 380, 506
TatI WGTACW 2 cut(s) 93, 216
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 2 cut(s) 142, 453
Tru1I TTAA 2 cut(s) 396, 558
Tru9I TTAA 2 cut(s) 396, 558
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 2 cut(s) 133, 400
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 2 cut(s) 373, 535
VpaK11BI GGWCC 2 cut(s) 100, 106
XapI RAATTY 2 cut(s) 380, 506
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.