Rmu_sc0001418.1_g000006

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001418.1
OG0000148
Physical Location & Seq
Reverse (-)
21314 .. 21946
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001418.1_g000006.1.cds

Sequence Viewer

Length: 633 bp
atgtcgggggactccatagacgaggaaaaagaaaaaaacatctctgtcaagctcatagtgagtaaatcaaagaatgtggtttgctatgcagaagtacgagaggattttgttaatttgatcttcagtttcttgactcttccacttgggtttatattaaagcagatgctggatttcccttggaaaggatgtattgatcagttgtgcaagggtgtcctggattttgacgagcaattttttaagtcaaatcaccacaaggaattgctatgcaatcccaaacttgttcctgggttcagctttgagaacaatcttttaggaattgaggaggtcgtgtactatatgttttctgaatatcggaagtcaacttgtacgtataagttgacttctgatagttccattatctcttctaaccagtcctcactcgaagttaaatttttggatcccaaatcccatggtgataaagatagaaatgctaggggattcttaaaagaaccagcgattttcacagtaactgacaatttggatgtaaggcgagcatctccaatctttcaactgtctgttcttaatgatttgaaggtacatttcactgatattgaggaccgaactgtgcatgttggcaagaacgaggtgagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

210

Amino Acids

24.03

Weight (kDa)

5.59

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 431, 444
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 106
AfaI GTAC 4 cut(s) 96, 332, 367, 576
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 2 cut(s) 548, 571
AjnI CCWGG 2 cut(s) 213, 283
AluBI AGCT 2 cut(s) 52, 294
AluI AGCT 2 cut(s) 52, 294
AlwI GGATC 2 cut(s) 431, 444
AlwNI CAGNNNCTG 2 cut(s) 166, 509
ApoI RAATTY 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 595
AsuHPI GGTGA 2 cut(s) 239, 464
AvaII GGWCC 1 cut(s) 595
BamHI GGATCC 1 cut(s) 436
BciT130I CCWGG 2 cut(s) 215, 285
BclI TGATCA 1 cut(s) 193
BfaI CTAG 1 cut(s) 471
Bme1390I CCNGG 2 cut(s) 215, 285
Bme18I GGWCC 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 2 cut(s) 215, 285
BmsI GCATC 2 cut(s) 153, 542
BsaAI YACGTR 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 176, 284, 448
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 409
BseBI CCWGG 2 cut(s) 215, 285
BseDI CCNNGG 3 cut(s) 176, 284, 448
BseGI GGATG 2 cut(s) 191, 526
BseLI CCNNNNNNNGG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 409
BseRI GAGGAG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 23
Bsp143I GATC 3 cut(s) 117, 193, 436
Bsp19I CCATGG 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 438
BspPI GGATC 2 cut(s) 431, 444
BsrI ACTGG 1 cut(s) 409
BssECI CCNNGG 3 cut(s) 176, 284, 448
BssMI GATC 3 cut(s) 117, 193, 436
BssT1I CCWWGG 2 cut(s) 176, 448
Bst2UI CCWGG 2 cut(s) 215, 285
Bst4CI ACNGT 3 cut(s) 505, 552, 604
Bst6I CTCTTC 2 cut(s) 141, 406
BstBAI YACGTR 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 531
BstDSI CCRYGG 1 cut(s) 448
BstENI CCTNNNNNAGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 191, 526
BstKTI GATC 3 cut(s) 120, 196, 439
BstMBI GATC 3 cut(s) 117, 193, 436
BstNI CCWGG 2 cut(s) 215, 285
BstNSI RCATGY 1 cut(s) 611
BstSCI CCNGG 2 cut(s) 213, 283
BstSNI TACGTA 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BtgI CCRYGG 1 cut(s) 448
BtsCI GGATG 2 cut(s) 191, 526
BtsIMutI CAGTG 1 cut(s) 582
Cac8I GCNNGC 1 cut(s) 531
CaiI CAGNNNCTG 2 cut(s) 166, 509
Cfr13I GGNCC 1 cut(s) 595
Csp6I GTAC 4 cut(s) 95, 331, 366, 575
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 2 cut(s) 449, 608
CviJI RGCY 2 cut(s) 52, 294
CviKI_1 RGCY 2 cut(s) 52, 294
CviQI GTAC 4 cut(s) 95, 331, 366, 575
DpnI GATC 3 cut(s) 119, 195, 438
DpnII GATC 3 cut(s) 117, 193, 436
Eam1104I CTCTTC 2 cut(s) 141, 406
EarI CTCTTC 2 cut(s) 141, 406
Eco105I TACGTA 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 176, 448
Eco47I GGWCC 1 cut(s) 595
Eco57I CTGAAG 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 180
EcoRII CCWGG 2 cut(s) 213, 283
EcoT14I CCWWGG 2 cut(s) 176, 448
ErhI CCWWGG 2 cut(s) 176, 448
FaeI CATG 2 cut(s) 452, 611
FaqI GGGAC 1 cut(s) 23
FatI CATG 2 cut(s) 448, 607
FbaI TGATCA 1 cut(s) 193
FokI GGATG 2 cut(s) 198, 533
FspBI CTAG 1 cut(s) 471
Hin1II CATG 2 cut(s) 452, 611
HincII GTYRAC 2 cut(s) 360, 378
HindII GTYRAC 2 cut(s) 360, 378
HinfI GANTC 3 cut(s) 11, 133, 477
HphI GGTGA 2 cut(s) 239, 464
Hpy166II GTNNAC 3 cut(s) 331, 360, 378
Hpy188I TCNGA 3 cut(s) 346, 354, 385
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 3 cut(s) 331, 360, 378
HpyAV CCTTC 1 cut(s) 565
HpyCH4III ACNGT 3 cut(s) 505, 552, 604
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 4 cut(s) 89, 204, 267, 607
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 2 cut(s) 452, 611
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 3 cut(s) 117, 193, 436
LpnPI CCDG 7 cut(s) 152, 200, 227, 270, 297, 422, 504
LweI GCATC 2 cut(s) 153, 542
MaeI CTAG 1 cut(s) 471
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 505
MalI GATC 3 cut(s) 119, 195, 438
MboI GATC 3 cut(s) 117, 193, 436
MboII GAAGA 3 cut(s) 112, 128, 393
MflI RGATCY 1 cut(s) 436
MluCI AATT 6 cut(s) 112, 230, 257, 315, 428, 514
MlyI GAGTC 2 cut(s) 5, 127
MnlI CCTC 7 cut(s) 16, 94, 313, 316, 424, 586, 616
MseI TTAA 6 cut(s) 111, 155, 237, 426, 482, 561
MspR9I CCNGG 2 cut(s) 215, 285
MvaI CCWGG 2 cut(s) 215, 285
NcoI CCATGG 1 cut(s) 448
NdeII GATC 3 cut(s) 117, 193, 436
NlaIII CATG 2 cut(s) 452, 611
NlaIV GGNNCC 1 cut(s) 438
NspI RCATGY 1 cut(s) 611
PfeI GAWTC 1 cut(s) 477
PfoI TCCNGGA 1 cut(s) 213
PleI GAGTC 2 cut(s) 5, 127
PpsI GAGTC 2 cut(s) 5, 127
Ppu21I YACGTR 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 213, 283
PspGI CCWGG 2 cut(s) 213, 283
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 595
PstNI CAGNNNCTG 2 cut(s) 166, 509
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 4 cut(s) 96, 332, 367, 576
RsaNI GTAC 4 cut(s) 95, 331, 366, 575
SaqAI TTAA 6 cut(s) 111, 155, 237, 426, 482, 561
Sau3AI GATC 3 cut(s) 117, 193, 436
Sau96I GGNCC 1 cut(s) 595
SchI GAGTC 2 cut(s) 5, 127
ScrFI CCNGG 2 cut(s) 215, 285
SetI ASST 6 cut(s) 54, 296, 327, 371, 576, 627
SfaNI GCATC 2 cut(s) 153, 542
SinI GGWCC 1 cut(s) 595
SnaBI TACGTA 1 cut(s) 369
Sse9I AATT 6 cut(s) 112, 230, 257, 315, 428, 514
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 2 cut(s) 213, 283
StyI CCWWGG 2 cut(s) 176, 448
TaaI ACNGT 3 cut(s) 505, 552, 604
TaiI ACGT 1 cut(s) 371
TaqI TCGA 1 cut(s) 420
TaqII GACCGA 1 cut(s) 612
TasI AATT 6 cut(s) 112, 230, 257, 315, 428, 514
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 6 cut(s) 111, 155, 237, 426, 482, 561
Tru9I TTAA 6 cut(s) 111, 155, 237, 426, 482, 561
TscAI CASTG 1 cut(s) 589
TspRI CASTG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 595
XagI CCTNNNNNAGG 1 cut(s) 180
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 611
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.