RchiOBHm_Chr5g0067891

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000148
Physical Location & Seq
Forward (+)
73945101 .. 73945730
630 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34356

Sequence Viewer

Length: 630 bp
ATGGCTCAAGAAGTATCAGATGCGAAGAATATCAGCTTGAAGGCATTAGTGGACAAGGGGAGAAACAGAGTTATCTTCGTAGAGGCCGATAATGATTTCATTGATGTTCTCTTCAGTTTTTTGACATTACCGATGGGAAAAATTGTCAGGCTTGCCTGCGACCATTCAACACCACTGGAAATAGGTTGCATGAACAAATTGTATCAGAGTATTGAGAAGCTTGATGTGCAGGTTTTCAGGTCCAATGCATGTAGAGACATGTTGTTACTTCCGCACAGTGCAGCTAACTGTCATTGCAAGAACCTCAAATTGAAAATTATTGACGATGCTGAGCCAAAACAGTTTAACTGCTTTTTTTATTCTCATTCCTGGTACAGTTATTATTCAACTGTTCGTTGCCCTTCCTGTCAAAATTCCATGGAGTATGAAGTATATCTTTCAGAGGGTGATTCTCAAGTTGGAGGGGTCTTTGTAAAAAAGCGAGCCAGGGTTATAATTACTGATGATTTACAAGTGATACCCCCATTAAGTGCAGCTAGCATTTCCTTGTTTACCAAGCTTGGAGCCACGAATAGCAATACCACTGAGGAGCTAACTTTCAGTATTGGAGTCGAGCAGGTAATTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

209

Amino Acids

23.5

Weight (kDa)

5.81

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 9 - 208 6.2e-63 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 494
Acc36I ACCTGC 2 cut(s) 220, 607
AciI CCGC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 97
AfaI GTAC 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 4 cut(s) 40, 168, 313, 387
AjnI CCWGG 2 cut(s) 368, 485
AluBI AGCT 6 cut(s) 36, 220, 284, 536, 559, 592
AluI AGCT 6 cut(s) 36, 220, 284, 536, 559, 592
Alw26I GTCTC 1 cut(s) 249
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 281, 533
ApoI RAATTY 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 458
AsuNHI GCTAGC 1 cut(s) 536
AvaII GGWCC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 293, 545
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 2 cut(s) 370, 487
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 537
BfuAI ACCTGC 2 cut(s) 220, 607
BisI GCNGC 2 cut(s) 282, 534
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 2 cut(s) 283, 535
Bme1390I CCNGG 2 cut(s) 370, 487
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 2 cut(s) 370, 487
BmsI GCATC 2 cut(s) 10, 316
BmtI GCTAGC 1 cut(s) 540
Bpu1102I GCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 417, 486
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 292
BseBI CCWGG 2 cut(s) 370, 487
BseDI CCNNGG 2 cut(s) 417, 486
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 2 cut(s) 321, 576
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 602
BseXI GCAGC 2 cut(s) 293, 545
BsgI GTGCAG 3 cut(s) 248, 300, 552
BshFI GGCC 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 249
BsnI GGCC 1 cut(s) 86
Bsp1720I GCTNAGC 1 cut(s) 330
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 1 cut(s) 272
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 2 cut(s) 322, 577
BspLI GGNNCC 1 cut(s) 565
BspMI ACCTGC 2 cut(s) 220, 607
BspOI GCTAGC 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 417, 486
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 370, 487
Bst4CI ACNGT 5 cut(s) 278, 290, 342, 377, 391
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 4 cut(s) 153, 157, 483, 538
BstDEI CTNAG 2 cut(s) 330, 585
BstDSI CCRYGG 1 cut(s) 417
BstMAI GTCTC 1 cut(s) 249
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNI CCWGG 2 cut(s) 370, 487
BstNSI RCATGY 2 cut(s) 252, 262
BstSCI CCNGG 2 cut(s) 368, 485
BstV1I GCAGC 2 cut(s) 293, 545
BsuRI GGCC 1 cut(s) 86
BtgI CCRYGG 1 cut(s) 417
BtsIMutI CAGTG 3 cut(s) 173, 283, 582
BveI ACCTGC 2 cut(s) 220, 607
Cac8I GCNNGC 4 cut(s) 153, 157, 483, 538
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 373
CviAII CATG 4 cut(s) 190, 249, 259, 418
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 330, 585
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 368, 485
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 4 cut(s) 193, 252, 262, 421
FaiI YATR 7 cut(s) 191, 250, 260, 419, 426, 433, 494
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FatI CATG 4 cut(s) 189, 248, 258, 417
Fnu4HI GCNGC 2 cut(s) 282, 534
Fsp4HI GCNGC 2 cut(s) 282, 534
FspBI CTAG 1 cut(s) 537
GluI GCNGC 2 cut(s) 282, 534
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 4 cut(s) 193, 252, 262, 421
HindIII AAGCTT 2 cut(s) 218, 557
HinfI GANTC 2 cut(s) 449, 609
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 2 cut(s) 52, 552
Hpy188I TCNGA 3 cut(s) 19, 207, 442
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 2 cut(s) 52, 552
HpyAV CCTTC 2 cut(s) 34, 411
HpyCH4III ACNGT 5 cut(s) 278, 290, 342, 377, 391
HpyCH4V TGCA 6 cut(s) 189, 229, 248, 281, 297, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 2 cut(s) 330, 585
Hsp92II CATG 4 cut(s) 193, 252, 262, 421
LmnI GCTCC 2 cut(s) 563, 589
Lsp1109I GCAGC 2 cut(s) 293, 545
LweI GCATC 2 cut(s) 10, 316
MaeI CTAG 1 cut(s) 537
MaeIII GTNAC 1 cut(s) 264
MboII GAAGA 3 cut(s) 37, 67, 103
MluCI AATT 7 cut(s) 141, 197, 308, 315, 412, 495, 621
MlyI GAGTC 1 cut(s) 618
MmeI TCCRAC 1 cut(s) 439
MnlI CCTC 5 cut(s) 76, 314, 436, 455, 580
Mph1103I ATGCAT 1 cut(s) 250
MseI TTAA 2 cut(s) 345, 527
MspR9I CCNGG 2 cut(s) 370, 487
MvaI CCWGG 2 cut(s) 370, 487
MwoI GCNNNNNNNGC 1 cut(s) 226
NcoI CCATGG 1 cut(s) 417
NheI GCTAGC 1 cut(s) 536
NlaIII CATG 4 cut(s) 193, 252, 262, 421
NlaIV GGNNCC 1 cut(s) 565
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 2 cut(s) 252, 262
PciI ACATGT 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 2 cut(s) 283, 535
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
PscI ACATGT 1 cut(s) 258
PsiI TTATAA 1 cut(s) 494
Psp6I CCWGG 2 cut(s) 368, 485
PspGI CCWGG 2 cut(s) 368, 485
PspN4I GGNNCC 1 cut(s) 565
PspPI GGNCC 1 cut(s) 240
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 2 cut(s) 345, 527
SatI GCNGC 2 cut(s) 282, 534
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 1 cut(s) 618
ScrFI CCNGG 2 cut(s) 370, 487
SfaNI GCATC 2 cut(s) 10, 316
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 6, 453
SmoI CTYRAG 2 cut(s) 6, 453
Sse9I AATT 7 cut(s) 141, 197, 308, 315, 412, 495, 621
SsiI CCGC 1 cut(s) 272
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 2 cut(s) 368, 485
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 5 cut(s) 278, 290, 342, 377, 391
TaqI TCGA 1 cut(s) 612
TasI AATT 7 cut(s) 141, 197, 308, 315, 412, 495, 621
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 2 cut(s) 345, 527
Tru9I TTAA 2 cut(s) 345, 527
TscAI CASTG 3 cut(s) 180, 283, 589
TseI GCWGC 2 cut(s) 281, 533
TspDTI ATGAA 3 cut(s) 88, 206, 441
TspRI CASTG 3 cut(s) 180, 283, 589
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 412
XceI RCATGY 2 cut(s) 252, 262
XspI CTAG 1 cut(s) 537
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.