pycom11g07190

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000148
Physical Location & Seq
Reverse (-)
5433680 .. 5434452
773 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07190.2

Sequence Viewer

Length: 696 bp
ATGAAAGCGTTGAGAATGTTGATGCACGTCACTTTCCCAACTGAAGCATGTAAAGAGATGTTGCTACATCCCCGGGGGGCTGAATCTCATTGCAAGAATCTCAGATTAAAAACTGACAACGGTGAGGCCACTTGGTACTTTTTGTGCTCTGAGGGTTGCACTCGAAGATATAATCCATTTAGTCATTATAAAGGCGTTCTTTGCGAGTGCGGAGAACCCATGGATAGTGAGATCTCCCCTTCAGAACTGTCAGAAGGAAAGTTAAAAAGACCCTCGTTTTCAGACGGCGGAGTCTTTTGCAAAGAAGCAACCAGATTTATAATTAGTGATGATTTAGAAGTGATATCTCCATTATATTCAGGAGTCTCTCCTTTCCTTACAACGGTTGGCGTGACGGATGCGAATTCTACTGAGGAGATGACTTTCAATGTAGGAGTTGAAGAGGTTCTGAATTTGCTTTTACGCTCATTTGTTTCCAAGACACCATTTACAGATGCTCTGTTAAAGCGTAAACCAGAACAAAACTTAGCAGTACCAATGATAAGCAAGATATACGCTTTAAAAATCAAATGGCAGGAGAGATGGCGAATGACGGAAGAATCATTTCTGTTAAGCTTATGGTTAGTAAATCTAAGAACATGGTTTGTTATGCAGAAGCTGGGGAGGATTTTGTTAATCTACTATTCAGTTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

232

Amino Acids

26.47

Weight (kDa)

7.57

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 189, 320
AasI GACNNNNNNGTC 1 cut(s) 290
AciI CCGC 2 cut(s) 210, 288
AcsI RAATTY 2 cut(s) 403, 451
AcuI CTGAAG 2 cut(s) 63, 225
AfaI GTAC 2 cut(s) 137, 534
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 2 cut(s) 427, 440
AjiI CACGTC 1 cut(s) 28
AluBI AGCT 2 cut(s) 615, 658
AluI AGCT 2 cut(s) 615, 658
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 370
AlwNI CAGNNNCTG 1 cut(s) 658
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 1 cut(s) 126
ApoI RAATTY 2 cut(s) 403, 451
Asp700I GAANNNNTTC 2 cut(s) 444, 603
AsuC2I CCSGG 2 cut(s) 73, 74
AsuHPI GGTGA 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 149
BccI CCATC 1 cut(s) 576
BceAI ACGGC 1 cut(s) 301
BcnI CCSGG 2 cut(s) 73, 74
BcoDI GTCTC 1 cut(s) 370
BglII AGATCT 1 cut(s) 231
Bme1390I CCNGG 2 cut(s) 73, 74
BmeT110I CYCGRG 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 73, 74
BmsI GCATC 3 cut(s) 12, 388, 484
BpuMI CCSGG 2 cut(s) 73, 74
BsaJI CCNNGG 4 cut(s) 71, 72, 73, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 88
BseDI CCNNGG 4 cut(s) 71, 72, 73, 219
BseGI GGATG 2 cut(s) 67, 403
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 3 cut(s) 115, 141, 402
BseRI GAGGAG 1 cut(s) 428
BseYI CCCAGC 1 cut(s) 658
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 72
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 370
BsnI GGCC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 231
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 2 cut(s) 210, 288
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 3 cut(s) 114, 142, 403
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 4 cut(s) 71, 72, 73, 219
BssMI GATC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 3 cut(s) 122, 249, 385
Bst6I CTCTTC 1 cut(s) 435
BstDEI CTNAG 5 cut(s) 101, 150, 411, 526, 632
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 67, 403
BstKTI GATC 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 71, 72
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 219
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 2 cut(s) 67, 403
CaiI CAGNNNCTG 1 cut(s) 658
Cfr9I CCCGGG 1 cut(s) 72
Csp6I GTAC 2 cut(s) 136, 533
CviAII CATG 3 cut(s) 48, 220, 639
CviJI RGCY 4 cut(s) 80, 128, 615, 658
CviKI_1 RGCY 4 cut(s) 80, 128, 615, 658
CviQI GTAC 2 cut(s) 136, 533
DdeI CTNAG 5 cut(s) 101, 150, 411, 526, 632
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
DraI TTTAAA 1 cut(s) 561
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EciI GGCGGA 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 219
Eco32I GATATC 1 cut(s) 345
Eco57I CTGAAG 2 cut(s) 63, 225
Eco88I CYCGRG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 403
EcoRV GATATC 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 3 cut(s) 51, 223, 642
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 3 cut(s) 47, 219, 638
FokI GGATG 2 cut(s) 54, 410
GsaI CCCAGC 1 cut(s) 662
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 73
Hin1II CATG 3 cut(s) 51, 223, 642
HindIII AAGCTT 1 cut(s) 613
HinfI GANTC 5 cut(s) 83, 97, 291, 363, 599
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 512
Hpy188I TCNGA 6 cut(s) 104, 151, 244, 253, 283, 450
Hpy188III TCNNGA 1 cut(s) 360
Hpy8I GTNNAC 1 cut(s) 512
HpyAV CCTTC 2 cut(s) 248, 249
HpyCH4III ACNGT 3 cut(s) 122, 249, 385
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 5 cut(s) 25, 93, 159, 300, 652
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 5 cut(s) 101, 150, 411, 526, 632
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 3 cut(s) 51, 223, 642
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 6 cut(s) 86, 325, 345, 528, 560, 644
LweI GCATC 3 cut(s) 12, 388, 484
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 28, 391
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 3 cut(s) 177, 452, 608
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 3 cut(s) 321, 403, 451
MlyI GAGTC 2 cut(s) 300, 372
MnlI CCTC 6 cut(s) 118, 145, 283, 406, 436, 657
MroXI GAANNNNTTC 2 cut(s) 444, 603
MseI TTAA 6 cut(s) 107, 263, 503, 560, 611, 674
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 2 cut(s) 73, 74
MwoI GCNNNNNNNGC 1 cut(s) 201
NciI CCSGG 2 cut(s) 73, 74
NcoI CCATGG 1 cut(s) 219
NdeII GATC 1 cut(s) 231
NlaIII CATG 3 cut(s) 51, 223, 642
NmuCI GTSAC 2 cut(s) 28, 391
NspI RCATGY 1 cut(s) 51
PdmI GAANNNNTTC 2 cut(s) 444, 603
PfeI GAWTC 3 cut(s) 83, 97, 599
PleI GAGTC 2 cut(s) 299, 371
PpsI GAGTC 2 cut(s) 299, 371
PsiI TTATAA 2 cut(s) 189, 320
PspFI CCCAGC 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 658
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 2 cut(s) 137, 534
RsaNI GTAC 2 cut(s) 136, 533
SaqAI TTAA 6 cut(s) 107, 263, 503, 560, 611, 674
Sau3AI GATC 1 cut(s) 231
SchI GAGTC 2 cut(s) 300, 372
ScrFI CCNGG 2 cut(s) 73, 74
SduI GDGCHC 1 cut(s) 149
SetI ASST 4 cut(s) 30, 447, 617, 660
SfaNI GCATC 3 cut(s) 12, 388, 484
SmaI CCCGGG 1 cut(s) 74
Sse9I AATT 3 cut(s) 321, 403, 451
SsiI CCGC 2 cut(s) 210, 288
StyD4I CCNGG 2 cut(s) 71, 72
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 3 cut(s) 122, 249, 385
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 163
TasI AATT 3 cut(s) 321, 403, 451
TfiI GAWTC 3 cut(s) 83, 97, 599
Tru1I TTAA 6 cut(s) 107, 263, 503, 560, 611, 674
Tru9I TTAA 6 cut(s) 107, 263, 503, 560, 611, 674
TseFI GTSAC 2 cut(s) 28, 391
Tsp45I GTSAC 2 cut(s) 28, 391
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 410, 608
TspMI CCCGGG 1 cut(s) 72
XapI RAATTY 2 cut(s) 403, 451
XceI RCATGY 1 cut(s) 51
XmaI CCCGGG 1 cut(s) 72
XmnI GAANNNNTTC 2 cut(s) 444, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.