RchiOBHm_Chr5g0067581

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000148
Physical Location & Seq
Forward (+)
73699282 .. 73700349
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34327

Sequence Viewer

Length: 984 bp
ATGGCTGGTATCATAAGCTTAAAGGCCTTGGTGGACAAGGGGAGCAACAAAGTTATCTTCATCGAGTCAGACAATGATTTTGTTGATGTTCTCTTCAGTTTCTTGACAATTCCCATTGGAACGATTGTCAAGCTCACCAGTAAACAGGCAGTACCATTGCACATAGGTTGCATGAACAATTTGTATGATAGTGTTGTGAATATTGATGTTCAGCATTTTGAAACAGAAGCATATAGAGACATGTTGCTATCTCCCCAGAATGGGGCTGAATCTTATTGCAAGAACCTCAAGGTGAAAATTGATGATTTTGTGCAGAAAGGCTACTTTCTATGTGAAAGTTGGAATTGCACCTTCTTTGAAAACAGGTTATTAAGTCATTATAAAGGTGATTGTTGTCAATGTGGAAGATGCATGAATGTCAGTTGTGGTCTTACAGCTCCATCCTCGGTTGAGAAAGATGGCGGCATCTTTGTAAAAAAAAAAACAGCCAGACTCATGATTACTGATGATTTGCATGTGATGTCCCCATTATCTGCAGCAACTTGTTCTATAATAACGAATCTTGGAGTGGGGAACGAGAATAGCAAAGTTGAACAGTTGAGTTTCAAAGTGGAAGTTAATCAGGTTATGGAATTGCTAATGAGCTCTTTAGTATCAAAGACACCTTTGACTGAAATTCTGCTGAGGCATAAACAACAGAAACTGAGCAGTGAAAATGTTCATGAACGAATATGTATTGGATTGCAAGTGTCTGGAGATGTTTTGGATGAAAATGAAAAAAAGATTTCTGTTAAGCTTACAGTTAGAAAATCGAAGAATATTGTTTGTTATGCAGAAGCAGGGCAGGATTTTGTTAATCTACTCTTCAGTTTCTTGACTCTTCCACTTGGGGTTATATTAAGACATGTGCAGGATGTTTCTGTGTTGAGTTTCTGTGTCTGTGGGTTATGGCTAGTGAAGGAAAATGCTTCAAAGGCACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

327

Amino Acids

36.3

Weight (kDa)

6.65

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 5 - 309 1.1e-90 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AciI CCGC 1 cut(s) 462
AcsI RAATTY 1 cut(s) 675
AcuI CTGAAG 2 cut(s) 79, 850
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 3 cut(s) 260, 261, 262
AflIII ACRYGT 2 cut(s) 240, 904
AgsI TTSAA 5 cut(s) 221, 359, 593, 607, 972
AluBI AGCT 5 cut(s) 18, 133, 437, 645, 796
AluI AGCT 5 cut(s) 18, 133, 437, 645, 796
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 1 cut(s) 231
AlwNI CAGNNNCTG 1 cut(s) 703
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 536
ApoI RAATTY 1 cut(s) 675
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
Asp700I GAANNNNTTC 1 cut(s) 717
AsuHPI GGTGA 3 cut(s) 127, 304, 398
BanII GRGCYC 1 cut(s) 647
Bbv12I GWGCWC 1 cut(s) 647
BbvCI CCTCAGC 1 cut(s) 683
BbvI GCAGC 1 cut(s) 548
BccI CCATC 2 cut(s) 448, 452
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 953
BfmI CTRYAG 1 cut(s) 534
BisI GCNGC 2 cut(s) 463, 537
BlsI GCNGC 2 cut(s) 464, 538
BmsI GCATC 2 cut(s) 398, 474
BpmI CTGGAG 1 cut(s) 774
Bpu10I CCTNAGC 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 27, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 261, 262
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 27, 444
BseGI GGATG 3 cut(s) 440, 772, 919
BseLI CCNNNNNNNGG 3 cut(s) 260, 261, 262
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 674, 695
BseNI ACTGG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 548
BsgI GTGCAG 2 cut(s) 332, 929
BshFI GGCC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 647
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 3 cut(s) 260, 261, 262
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 647
BspACI CCGC 1 cut(s) 462
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 2 cut(s) 675, 696
BspHI TCATGA 2 cut(s) 495, 721
BspMAI CTGCAG 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 27, 444
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 597, 802
Bst6I CTCTTC 3 cut(s) 98, 869, 885
BstDEI CTNAG 2 cut(s) 683, 704
BstF5I GGATG 3 cut(s) 440, 772, 919
BstMAI GTCTC 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 974
BstNSI RCATGY 3 cut(s) 244, 518, 908
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 548
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 3 cut(s) 440, 772, 919
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 1 cut(s) 715
CaiI CAGNNNCTG 1 cut(s) 703
CciI TCATGA 2 cut(s) 495, 721
Csp6I GTAC 1 cut(s) 152
CviAII CATG 7 cut(s) 172, 241, 412, 496, 515, 722, 905
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 2 cut(s) 683, 704
Eam1104I CTCTTC 3 cut(s) 98, 869, 885
EarI CTCTTC 3 cut(s) 98, 869, 885
Ecl136II GAGCTC 1 cut(s) 645
Eco130I CCWWGG 1 cut(s) 27
Eco147I AGGCCT 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 647
Eco53kI GAGCTC 1 cut(s) 645
Eco57I CTGAAG 2 cut(s) 79, 850
EcoICRI GAGCTC 1 cut(s) 645
EcoT14I CCWWGG 1 cut(s) 27
EcoT22I ATGCAT 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 647
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 7 cut(s) 175, 244, 415, 499, 518, 725, 908
FaqI GGGAC 1 cut(s) 508
FatI CATG 7 cut(s) 171, 240, 411, 495, 514, 721, 904
Fnu4HI GCNGC 2 cut(s) 463, 537
FokI GGATG 3 cut(s) 427, 779, 926
FriOI GRGCYC 1 cut(s) 647
Fsp4HI GCNGC 2 cut(s) 463, 537
FspBI CTAG 1 cut(s) 953
GluI GCNGC 2 cut(s) 463, 537
GsuI CTGGAG 1 cut(s) 774
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 7 cut(s) 175, 244, 415, 499, 518, 725, 908
HindIII AAGCTT 2 cut(s) 16, 794
HinfI GANTC 5 cut(s) 65, 269, 492, 559, 877
HphI GGTGA 3 cut(s) 127, 304, 398
Hpy166II GTNNAC 2 cut(s) 34, 143
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 5 cut(s) 103, 496, 722, 753, 874
Hpy8I GTNNAC 2 cut(s) 34, 143
HpyAV CCTTC 2 cut(s) 361, 952
HpyCH4III ACNGT 2 cut(s) 597, 802
HpyF10VI GCNNNNNNNGC 1 cut(s) 974
HpyF3I CTNAG 2 cut(s) 683, 704
Hsp92II CATG 7 cut(s) 175, 244, 415, 499, 518, 725, 908
LmnI GCTCC 2 cut(s) 42, 442
Lsp1109I GCAGC 1 cut(s) 548
LweI GCATC 2 cut(s) 398, 474
MaeI CTAG 1 cut(s) 953
MboII GAAGA 6 cut(s) 49, 85, 417, 826, 856, 872
MhlI GDGCHC 1 cut(s) 647
MluCI AATT 6 cut(s) 108, 178, 297, 343, 632, 675
MlyI GAGTC 3 cut(s) 74, 486, 871
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 3 cut(s) 296, 454, 678
Mph1103I ATGCAT 1 cut(s) 413
MroXI GAANNNNTTC 1 cut(s) 717
MseI TTAA 6 cut(s) 20, 371, 618, 792, 855, 899
MwoI GCNNNNNNNGC 1 cut(s) 974
NlaIII CATG 7 cut(s) 175, 244, 415, 499, 518, 725, 908
NsiI ATGCAT 1 cut(s) 413
NspI RCATGY 3 cut(s) 244, 518, 908
PagI TCATGA 2 cut(s) 495, 721
PceI AGGCCT 1 cut(s) 26
PciI ACATGT 2 cut(s) 240, 904
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 269, 559
PkrI GCNGC 2 cut(s) 464, 538
PleI GAGTC 3 cut(s) 73, 486, 871
PpsI GAGTC 3 cut(s) 73, 486, 871
PscI ACATGT 2 cut(s) 240, 904
PsiI TTATAA 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 647
PstI CTGCAG 1 cut(s) 538
PstNI CAGNNNCTG 1 cut(s) 703
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacI GAGCTC 1 cut(s) 647
SaqAI TTAA 6 cut(s) 20, 371, 618, 792, 855, 899
SatI GCNGC 2 cut(s) 463, 537
SchI GAGTC 3 cut(s) 74, 486, 871
SduI GDGCHC 1 cut(s) 647
SfaNI GCATC 2 cut(s) 398, 474
SfcI CTRYAG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 6 cut(s) 108, 178, 297, 343, 632, 675
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 1 cut(s) 462
SspI AATATT 2 cut(s) 202, 820
SspMI CTAG 1 cut(s) 953
SstI GAGCTC 1 cut(s) 647
StuI AGGCCT 1 cut(s) 26
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 597, 802
TaqI TCGA 2 cut(s) 63, 812
TasI AATT 6 cut(s) 108, 178, 297, 343, 632, 675
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 2 cut(s) 269, 559
Tru1I TTAA 6 cut(s) 20, 371, 618, 792, 855, 899
Tru9I TTAA 6 cut(s) 20, 371, 618, 792, 855, 899
TscAI CASTG 1 cut(s) 715
TseI GCWGC 1 cut(s) 536
TspDTI ATGAA 7 cut(s) 49, 188, 428, 710, 738, 783, 789
TspRI CASTG 1 cut(s) 715
XapI RAATTY 1 cut(s) 675
XceI RCATGY 3 cut(s) 244, 518, 908
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 1 cut(s) 953
Zsp2I ATGCAT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.