pycom11g07250

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000148
Physical Location & Seq
Forward (+)
5494264 .. 5495462
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07250.1

Sequence Viewer

Length: 981 bp
ATGAACATGGAGACCACTTTTACAACGAAACAAGCTGAAGGTGGTGGGGTTTTTGTGGAAGGACCGAGGAGATTTATTATTGGTGATGATTTACAGGTACTGCCTCCATTTACTTCTGCAGTATCTTCTGTAGTTTCGAACCATGGACTCACGGGCTGGAATAGCGTTGAGGAGCTGACTTTTAATGTGGGAGTTGATGAGGTTTTGAATTTGCTTATGCGCTCATTAGTATCAGAGACACCTCTGACCGAGACTCTGCTGAAGGATAAAACCATACCAAGCATGACTGACGAAAACATTGACCAAGATTTATGCATTGAATATCGAGAGGTGGGAGGAAAAAGGAAAGAGGAAGAAGAAGAGATTTCTATCAAGCTTGTAGTTAGCAAATATAAGAAGAAGGTTTATTATGCCGAAGTGGGGGAGGATTTTGTTAATTTACTCTTCAGTTTCTTAACTCTTCCACTAGGGTTTGTAGTAAAACAAATGCAACATAACTCTTTGAAAGGTTGCATTGACCAGCTGTACAGAAGTGTCCAAGATCTTGATGAGCAGTACTTGAAGTCAAATTTACACAAGAGAAAGTTGGTGAGTCCTAAGCTTCTCCCTGGATTTGGCTACAAGAATCATCTTCTGGGAATTGAGGAAGCATCGTATAAATGGACTTACTCCGTAGAACCCAAATCCCATCGTAAAGAAGATTTTGTTGACTTCGTAGACCCCAAATCCCATCATAAAAAAGATCATAAAGGTTGTGGATTCTTGAAAGGACCGACTATGTTCATGGTAACTGACTGTCTCCATGTAAGTCCGATATCTGCAATTGTCGGCATGTCAATTCTGTGCGAACTGAACGTACCTGTGACTGATGTTGAGGTACGAGTGGCTCACGTGGGGAAAGAGGAGGCTATCCGTCTTTTGGTGGCTTCTTTTGTTTGTCCCTCTGCTCTAACTAGTGTCTTCCTTACGAAGCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

327

Amino Acids

36.63

Weight (kDa)

5.97

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 8 - 301 9.6e-74 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 717
AcsI RAATTY 2 cut(s) 208, 568
AcuI CTGAAG 3 cut(s) 57, 281, 430
AcvI CACGTG 1 cut(s) 892
AfaI GTAC 5 cut(s) 99, 527, 557, 858, 879
AfiI CCNNNNNNNGG 3 cut(s) 420, 614, 919
AgsI TTSAA 5 cut(s) 208, 320, 505, 562, 766
AhlI ACTAGT 1 cut(s) 953
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 5 cut(s) 35, 175, 376, 523, 601
AluI AGCT 5 cut(s) 35, 175, 376, 523, 601
Alw26I GTCTC 4 cut(s) 5, 230, 245, 803
AlwNI CAGNNNCTG 1 cut(s) 100
ApoI RAATTY 2 cut(s) 208, 568
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 62, 770
AsuHPI GGTGA 2 cut(s) 95, 601
AsuII TTCGAA 1 cut(s) 137
AvaII GGWCC 2 cut(s) 62, 770
BbrPI CACGTG 1 cut(s) 892
BbsI GAAGAC 1 cut(s) 952
BccI CCATC 2 cut(s) 696, 738
BciT130I CCWGG 1 cut(s) 609
BcoDI GTCTC 4 cut(s) 5, 230, 245, 803
BcuI ACTAGT 1 cut(s) 953
BfaI CTAG 2 cut(s) 467, 954
BfmI CTRYAG 2 cut(s) 117, 129
BglII AGATCT 1 cut(s) 541
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 1 cut(s) 609
Bme18I GGWCC 2 cut(s) 62, 770
BmgT120I GGNCC 2 cut(s) 62, 770
BmrFI CCNGG 1 cut(s) 609
BmsI GCATC 1 cut(s) 659
BpiI GAAGAC 1 cut(s) 952
Bpu10I CCTNAGC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 892
BsaBI GATNNNNATC 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 65, 142, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 614, 919
Bse8I GATNNNNATC 1 cut(s) 368
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 3 cut(s) 65, 142, 607
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 3 cut(s) 420, 614, 919
BseRI GAGGAG 3 cut(s) 82, 185, 917
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 3 cut(s) 420, 614, 919
BsmAI GTCTC 4 cut(s) 5, 230, 245, 803
BsmFI GGGAC 1 cut(s) 924
Bso31I GGTCTC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 137
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 2 cut(s) 541, 742
Bsp19I CCATGG 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 121
BspT104I TTCGAA 1 cut(s) 137
BspTNI GGTCTC 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 525
BssECI CCNNGG 3 cut(s) 65, 142, 607
BssMI GATC 2 cut(s) 541, 742
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 1 cut(s) 797
Bst6I CTCTTC 3 cut(s) 354, 449, 465
BstAUI TGTACA 1 cut(s) 525
BstBAI YACGTR 1 cut(s) 892
BstBI TTCGAA 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 597
BstDSI CCRYGG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 2 cut(s) 544, 745
BstMAI GTCTC 4 cut(s) 5, 230, 245, 803
BstMBI GATC 2 cut(s) 541, 742
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 1 cut(s) 835
BstSCI CCNGG 1 cut(s) 607
BstSFI CTRYAG 2 cut(s) 117, 129
BstV2I GAAGAC 1 cut(s) 952
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BtgI CCRYGG 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 100
CfoI GCGC 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 62, 770
Csp6I GTAC 5 cut(s) 98, 526, 556, 857, 878
CviAII CATG 6 cut(s) 7, 143, 283, 784, 803, 832
CviQI GTAC 5 cut(s) 98, 526, 556, 857, 878
DdeI CTNAG 1 cut(s) 597
DpnI GATC 2 cut(s) 543, 744
DpnII GATC 2 cut(s) 541, 742
Eam1104I CTCTTC 3 cut(s) 354, 449, 465
EarI CTCTTC 3 cut(s) 354, 449, 465
Eco130I CCWWGG 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 5
Eco32I GATATC 1 cut(s) 816
Eco47I GGWCC 2 cut(s) 62, 770
Eco57I CTGAAG 3 cut(s) 57, 281, 430
Eco72I CACGTG 1 cut(s) 892
EcoRII CCWGG 1 cut(s) 607
EcoRV GATATC 1 cut(s) 816
EcoT14I CCWWGG 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 6 cut(s) 10, 146, 286, 787, 806, 835
FaqI GGGAC 1 cut(s) 924
FatI CATG 6 cut(s) 6, 142, 282, 783, 802, 831
FblI GTMKAC 1 cut(s) 717
FspBI CTAG 2 cut(s) 467, 954
GlaI GCGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 222
Hin1II CATG 6 cut(s) 10, 146, 286, 787, 806, 835
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HindIII AAGCTT 2 cut(s) 374, 599
HinfI GANTC 5 cut(s) 147, 253, 592, 625, 759
HphI GGTGA 2 cut(s) 95, 601
Hpy166II GTNNAC 2 cut(s) 709, 718
Hpy188I TCNGA 3 cut(s) 235, 246, 813
Hpy188III TCNNGA 3 cut(s) 326, 545, 763
Hpy8I GTNNAC 2 cut(s) 709, 718
HpyAV CCTTC 4 cut(s) 32, 53, 256, 394
HpyCH4III ACNGT 1 cut(s) 797
HpyCH4IV ACGT 2 cut(s) 855, 891
HpyCH4V TGCA 5 cut(s) 119, 315, 490, 513, 821
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 2 cut(s) 855, 891
Hsp92II CATG 6 cut(s) 10, 146, 286, 787, 806, 835
HspAI GCGC 1 cut(s) 220
Kzo9I GATC 2 cut(s) 541, 742
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 7 cut(s) 80, 142, 533, 594, 620, 621, 873
LweI GCATC 1 cut(s) 659
MaeI CTAG 2 cut(s) 467, 954
MaeII ACGT 2 cut(s) 855, 891
MaeIII GTNAC 2 cut(s) 787, 862
MalI GATC 2 cut(s) 543, 744
MboI GATC 2 cut(s) 541, 742
MfeI CAATTG 1 cut(s) 822
MflI RGATCY 1 cut(s) 541
MluCI AATT 6 cut(s) 208, 436, 568, 639, 822, 837
MlyI GAGTC 3 cut(s) 141, 247, 601
Mph1103I ATGCAT 1 cut(s) 317
MseI TTAA 3 cut(s) 183, 435, 455
MspA1I CMGCKG 1 cut(s) 523
MspR9I CCNGG 1 cut(s) 609
MunI CAATTG 1 cut(s) 822
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 1 cut(s) 162
NcoI CCATGG 1 cut(s) 142
NdeII GATC 2 cut(s) 541, 742
NlaIII CATG 6 cut(s) 10, 146, 286, 787, 806, 835
NmuCI GTSAC 1 cut(s) 862
NsiI ATGCAT 1 cut(s) 317
NspI RCATGY 1 cut(s) 835
NspV TTCGAA 1 cut(s) 137
PfeI GAWTC 2 cut(s) 625, 759
PleI GAGTC 3 cut(s) 141, 247, 600
PmaCI CACGTG 1 cut(s) 892
PmlI CACGTG 1 cut(s) 892
PpsI GAGTC 3 cut(s) 141, 247, 600
Ppu21I YACGTR 1 cut(s) 892
Psp6I CCWGG 1 cut(s) 607
PspCI CACGTG 1 cut(s) 892
PspGI CCWGG 1 cut(s) 607
PspPI GGNCC 2 cut(s) 62, 770
PsrI GAACNNNNNNTAC 2 cut(s) 840, 872
PstI CTGCAG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 541
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 5 cut(s) 99, 527, 557, 858, 879
RsaNI GTAC 5 cut(s) 98, 526, 556, 857, 878
SaqAI TTAA 3 cut(s) 183, 435, 455
Sau3AI GATC 2 cut(s) 541, 742
Sau96I GGNCC 2 cut(s) 62, 770
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 3 cut(s) 141, 247, 601
ScrFI CCNGG 1 cut(s) 609
SfaNI GCATC 1 cut(s) 659
SfcI CTRYAG 2 cut(s) 117, 129
SfuI TTCGAA 1 cut(s) 137
SinI GGWCC 2 cut(s) 62, 770
SpeI ACTAGT 1 cut(s) 953
Sse9I AATT 6 cut(s) 208, 436, 568, 639, 822, 837
SspMI CTAG 2 cut(s) 467, 954
StyD4I CCNGG 1 cut(s) 607
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 797
TaiI ACGT 2 cut(s) 858, 894
TaqI TCGA 2 cut(s) 137, 325
TaqII GACCGA 3 cut(s) 79, 263, 787
TasI AATT 6 cut(s) 208, 436, 568, 639, 822, 837
TatI WGTACW 2 cut(s) 525, 555
TfiI GAWTC 2 cut(s) 625, 759
Tru1I TTAA 3 cut(s) 183, 435, 455
Tru9I TTAA 3 cut(s) 183, 435, 455
TseFI GTSAC 1 cut(s) 862
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 2 cut(s) 17, 772
TspGWI ACGGA 2 cut(s) 661, 902
VpaK11BI GGWCC 2 cut(s) 62, 770
XapI RAATTY 2 cut(s) 208, 568
XceI RCATGY 1 cut(s) 835
XmiI GTMKAC 1 cut(s) 717
XspI CTAG 2 cut(s) 467, 954
ZrmI AGTACT 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.