Rmu_sc0008054.1_g000001

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008054.1
OG0000148
Physical Location & Seq
Reverse (-)
1980 .. 3504
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008054.1_g000001.1.cds

Sequence Viewer

Length: 1074 bp
atgctgctgtgcccccgcggtcgagcaggagcgactttgaagaacctcaaattcaacattgaggaccatgagaccacgcggtactttaggtgctctaatgtgtcttgccaaagctccccaaccaagattagctattacagtagtgttcgttgtcattgtggatatctaatggacagagagatcaacctttcagttaaagttggtgatgaggtgtttgtaaaaggactatccagacttattatcagtgatcatttacaagtcatggccccaggaactccagcaatttctgttttctttgagaagcttggaagcatggattcgaattctattgaggaagtgactatgaacattggagttgatgaggttttgaatctgcttttgtgctcatttggatcaaagacacccctgactgatatacttctgacgaatactggtaatcaaccgatatacacaatctcttattcacaaatgctaggagacacaatgggtgatggaactaacatgtctgtgaaacttatagttagcaagtctaagaaggtggtttgttatgcagaagcaggggaagattttgttaattttcttttcagcttcctaattcttccacttggttttattttaaaacaaatttggtttgatttaaaaggatgtgttgtttacttgtacagaagtgtccaggatcttgatgagaaattcttgaaatctcgtttctgcaatgaactgctgcttagtcccaagcttcctcctcgattttgttacgaaaatcaccctttaggaattggaatggcatcatatcgttttgagtcagctgaaattgtggaccccaaatctcacgctaatgaaaaggtttgtgatcaaggattcttaaaagggccagccatgtttatggtaactgacagtcttgctgtaacttcgatatctcccatccttgggctgtctattctgaatgaaatgaatgtacctatcactgatattgaggtgaaaacagtctacgtgggtaaagaggaggctttcagtcttttggtggcgtcttttgtttctgatggctctgcccttaccagtgttttccttggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

357

Amino Acids

39.51

Weight (kDa)

5.5

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 987
AccII CGCG 2 cut(s) 18, 79
AciI CCGC 3 cut(s) 16, 18, 79
AclWI GGATC 2 cut(s) 400, 684
AcsI RAATTY 4 cut(s) 50, 322, 624, 689
AcyI GRCGYC 1 cut(s) 1025
AfaI GTAC 3 cut(s) 83, 662, 957
AfiI CCNNNNNNNGG 2 cut(s) 926, 927
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 4 cut(s) 40, 55, 370, 697
AjnI CCWGG 2 cut(s) 268, 672
AluBI AGCT 6 cut(s) 114, 132, 304, 588, 736, 806
AluI AGCT 6 cut(s) 114, 132, 304, 588, 736, 806
Alw21I GWGCWC 2 cut(s) 95, 386
Alw26I GTCTC 2 cut(s) 65, 471
AlwI GGATC 2 cut(s) 400, 684
AoxI GGCC 2 cut(s) 264, 869
ApeKI GCWGC 2 cut(s) 4, 721
ApoI RAATTY 4 cut(s) 50, 322, 624, 689
AspS9I GGNCC 4 cut(s) 64, 265, 817, 869
AsuHPI GGTGA 4 cut(s) 215, 500, 755, 988
AsuII TTCGAA 1 cut(s) 320
AvaII GGWCC 2 cut(s) 64, 817
BaeGI GKGCMC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 95, 386
BbvI GCAGC 1 cut(s) 708
BccI CCATC 3 cut(s) 485, 929, 1034
BciT130I CCWGG 2 cut(s) 270, 674
BclI TGATCA 2 cut(s) 247, 850
BcoDI GTCTC 2 cut(s) 65, 471
BfaI CTAG 1 cut(s) 473
BisI GCNGC 2 cut(s) 5, 722
BlsI GCNGC 2 cut(s) 6, 723
Bme1390I CCNGG 2 cut(s) 270, 674
Bme18I GGWCC 2 cut(s) 64, 817
BmgT120I GGNCC 4 cut(s) 64, 265, 817, 869
BmiI GGNNCC 2 cut(s) 267, 819
BmrFI CCNGG 2 cut(s) 270, 674
BmsI GCATC 1 cut(s) 794
BpmI CTGGAG 1 cut(s) 261
Bpu14I TTCGAA 1 cut(s) 320
BsaAI YACGTR 1 cut(s) 991
BsaHI GRCGYC 1 cut(s) 1025
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 4 cut(s) 16, 268, 925, 1066
Bsc4I CCNNNNNNNGG 2 cut(s) 926, 927
Bse1I ACTGG 2 cut(s) 436, 1056
Bse3DI GCAATG 1 cut(s) 718
BseBI CCWGG 2 cut(s) 270, 674
BseDI CCNNGG 4 cut(s) 16, 268, 925, 1066
BseGI GGATG 2 cut(s) 650, 921
BseLI CCNNNNNNNGG 2 cut(s) 926, 927
BseMI GCAATG 1 cut(s) 718
BseNI ACTGG 2 cut(s) 436, 1056
BseRI GAGGAG 2 cut(s) 732, 1016
BseSI GKGCMC 1 cut(s) 14
BseXI GCAGC 1 cut(s) 708
Bsh1236I CGCG 2 cut(s) 18, 79
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 266, 871
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 2 cut(s) 95, 386
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 2 cut(s) 926, 927
BsmAI GTCTC 2 cut(s) 65, 471
BsmFI GGGAC 1 cut(s) 714
BsnI GGCC 2 cut(s) 266, 871
Bso31I GGTCTC 1 cut(s) 65
Bsp119I TTCGAA 1 cut(s) 320
Bsp1286I GDGCHC 3 cut(s) 14, 95, 386
Bsp1407I TGTACA 1 cut(s) 660
Bsp143I GATC 5 cut(s) 180, 247, 392, 676, 850
BspACI CCGC 3 cut(s) 16, 18, 79
BspANI GGCC 2 cut(s) 266, 871
BspFNI CGCG 2 cut(s) 18, 79
BspLI GGNNCC 2 cut(s) 267, 819
BspPI GGATC 2 cut(s) 400, 684
BspT104I TTCGAA 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 718
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 2 cut(s) 436, 1056
BssECI CCNNGG 4 cut(s) 16, 268, 925, 1066
BssMI GATC 5 cut(s) 180, 247, 392, 676, 850
BssNI GRCGYC 1 cut(s) 1025
BssT1I CCWWGG 2 cut(s) 925, 1066
Bst2UI CCWGG 2 cut(s) 270, 674
Bst4CI ACNGT 3 cut(s) 140, 896, 985
BstACI GRCGYC 1 cut(s) 1025
BstAUI TGTACA 1 cut(s) 660
BstBAI YACGTR 1 cut(s) 991
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 873
BstDEI CTNAG 2 cut(s) 531, 725
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 2 cut(s) 650, 921
BstFNI CGCG 2 cut(s) 18, 79
BstKTI GATC 5 cut(s) 183, 250, 395, 679, 853
BstMAI GTCTC 2 cut(s) 65, 471
BstMBI GATC 5 cut(s) 180, 247, 392, 676, 850
BstMCI CGRYCG 1 cut(s) 22
BstNI CCWGG 2 cut(s) 270, 674
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 2 cut(s) 268, 672
BstSLI GKGCMC 1 cut(s) 14
BstUI CGCG 2 cut(s) 18, 79
BstV1I GCAGC 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 676
BstXI CCANNNNNNTGG 1 cut(s) 883
BstYI RGATCY 1 cut(s) 676
BsuRI GGCC 2 cut(s) 266, 871
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 2 cut(s) 650, 921
BtsIMutI CAGTG 3 cut(s) 250, 963, 1063
Cac8I GCNNGC 1 cut(s) 873
Cfr13I GGNCC 4 cut(s) 64, 265, 817, 869
Cfr42I CCGCGG 1 cut(s) 19
CseI GACGC 1 cut(s) 1014
Csp6I GTAC 3 cut(s) 82, 661, 956
CviAII CATG 5 cut(s) 68, 262, 313, 502, 877
CviQI GTAC 3 cut(s) 82, 661, 956
DdeI CTNAG 2 cut(s) 531, 725
DpnI GATC 5 cut(s) 182, 249, 394, 678, 852
DpnII GATC 5 cut(s) 180, 247, 392, 676, 850
DraI TTTAAA 2 cut(s) 618, 639
Eco130I CCWWGG 2 cut(s) 925, 1066
Eco31I GGTCTC 1 cut(s) 65
Eco32I GATATC 2 cut(s) 164, 915
Eco47I GGWCC 2 cut(s) 64, 817
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 2 cut(s) 268, 672
EcoRV GATATC 2 cut(s) 164, 915
EcoT14I CCWWGG 2 cut(s) 925, 1066
ErhI CCWWGG 2 cut(s) 925, 1066
FaeI CATG 5 cut(s) 71, 265, 316, 505, 880
FaqI GGGAC 1 cut(s) 714
FatI CATG 5 cut(s) 67, 261, 312, 501, 876
FauI CCCGC 1 cut(s) 23
FbaI TGATCA 2 cut(s) 247, 850
FblI GTMKAC 1 cut(s) 987
Fnu4HI GCNGC 2 cut(s) 5, 722
FokI GGATG 2 cut(s) 657, 908
Fsp4HI GCNGC 2 cut(s) 5, 722
FspBI CTAG 1 cut(s) 473
GluI GCNGC 2 cut(s) 5, 722
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 2 cut(s) 266, 871
HgaI GACGC 1 cut(s) 1014
Hin1I GRCGYC 1 cut(s) 1025
Hin1II CATG 5 cut(s) 71, 265, 316, 505, 880
HindIII AAGCTT 2 cut(s) 302, 734
HinfI GANTC 4 cut(s) 317, 370, 800, 858
HphI GGTGA 4 cut(s) 215, 500, 755, 988
Hpy166II GTNNAC 3 cut(s) 655, 817, 988
Hpy188I TCNGA 3 cut(s) 423, 942, 1039
Hpy188III TCNNGA 3 cut(s) 231, 680, 694
Hpy8I GTNNAC 3 cut(s) 655, 817, 988
HpyAV CCTTC 1 cut(s) 529
HpyCH4III ACNGT 3 cut(s) 140, 896, 985
HpyCH4IV ACGT 1 cut(s) 990
HpyCH4V TGCA 2 cut(s) 551, 711
HpyF3I CTNAG 2 cut(s) 531, 725
HpySE526I ACGT 1 cut(s) 990
Hsp92I GRCGYC 1 cut(s) 1025
Hsp92II CATG 5 cut(s) 71, 265, 316, 505, 880
Ksp22I TGATCA 2 cut(s) 247, 850
KspI CCGCGG 1 cut(s) 19
Kzo9I GATC 5 cut(s) 180, 247, 392, 676, 850
LmnI GCTCC 2 cut(s) 29, 119
Lsp1109I GCAGC 1 cut(s) 708
LweI GCATC 1 cut(s) 794
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 990
MaeIII GTNAC 4 cut(s) 337, 752, 886, 904
MalI GATC 5 cut(s) 182, 249, 394, 678, 852
MboI GATC 5 cut(s) 180, 247, 392, 676, 850
MboII GAAGA 3 cut(s) 52, 575, 590
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 3 cut(s) 14, 95, 386
MluCI AATT 9 cut(s) 50, 282, 322, 574, 594, 624, 689, 774, 810
MlyI GAGTC 1 cut(s) 809
MseI TTAA 5 cut(s) 195, 573, 617, 638, 863
MslI CAYNNNNRTG 3 cut(s) 506, 834, 881
MspA1I CMGCKG 2 cut(s) 18, 806
MspR9I CCNGG 2 cut(s) 270, 674
MvaI CCWGG 2 cut(s) 270, 674
MvnI CGCG 2 cut(s) 18, 79
NdeII GATC 5 cut(s) 180, 247, 392, 676, 850
NlaIII CATG 5 cut(s) 71, 265, 316, 505, 880
NlaIV GGNNCC 2 cut(s) 267, 819
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 505
NspV TTCGAA 1 cut(s) 320
PciI ACATGT 1 cut(s) 501
PfeI GAWTC 3 cut(s) 317, 370, 858
PfoI TCCNGGA 1 cut(s) 672
PkrI GCNGC 2 cut(s) 6, 723
PleI GAGTC 1 cut(s) 808
PpsI GAGTC 1 cut(s) 808
Ppu21I YACGTR 1 cut(s) 991
PscI ACATGT 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 268, 672
PspGI CCWGG 2 cut(s) 268, 672
PspN4I GGNNCC 2 cut(s) 267, 819
PspPI GGNCC 4 cut(s) 64, 265, 817, 869
PsuI RGATCY 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 3 cut(s) 83, 662, 957
RsaNI GTAC 3 cut(s) 82, 661, 956
RseI CAYNNNNRTG 3 cut(s) 506, 834, 881
SacII CCGCGG 1 cut(s) 19
SaqAI TTAA 5 cut(s) 195, 573, 617, 638, 863
SatI GCNGC 2 cut(s) 5, 722
Sau3AI GATC 5 cut(s) 180, 247, 392, 676, 850
Sau96I GGNCC 4 cut(s) 64, 265, 817, 869
SchI GAGTC 1 cut(s) 809
ScrFI CCNGG 2 cut(s) 270, 674
SduI GDGCHC 3 cut(s) 14, 95, 386
SfaNI GCATC 1 cut(s) 794
Sfr303I CCGCGG 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 320
SgrBI CCGCGG 1 cut(s) 19
SinI GGWCC 2 cut(s) 64, 817
SmiMI CAYNNNNRTG 3 cut(s) 506, 834, 881
Sse9I AATT 9 cut(s) 50, 282, 322, 574, 594, 624, 689, 774, 810
SsiI CCGC 3 cut(s) 16, 18, 79
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 2 cut(s) 268, 672
StyI CCWWGG 2 cut(s) 925, 1066
TaaI ACNGT 3 cut(s) 140, 896, 985
TaiI ACGT 1 cut(s) 993
TaqI TCGA 4 cut(s) 22, 320, 745, 911
TasI AATT 9 cut(s) 50, 282, 322, 574, 594, 624, 689, 774, 810
TatI WGTACW 1 cut(s) 660
TfiI GAWTC 3 cut(s) 317, 370, 858
Tru1I TTAA 5 cut(s) 195, 573, 617, 638, 863
Tru9I TTAA 5 cut(s) 195, 573, 617, 638, 863
TscAI CASTG 3 cut(s) 250, 970, 1063
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 2 cut(s) 4, 721
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 5 cut(s) 359, 729, 852, 960, 965
TspRI CASTG 3 cut(s) 250, 970, 1063
VpaK11BI GGWCC 2 cut(s) 64, 817
XapI RAATTY 4 cut(s) 50, 322, 624, 689
XceI RCATGY 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 987
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.