Rroxscaffold_1G00013710

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002401
Physical Location & Seq
Forward (+)
16926934 .. 16935866
8933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013710.1

Sequence Viewer

Length: 3723 bp
ATGGTGGATTATATTGATGCACTAAGCATGGGATTTGATAATGAGTGCATACTGAACATCCAATCTCTTGCGGGAGAGTACTTTTGCCCGGTCTGTCGTCTTCTTGTCTACCCAAATGAAGCATTGCAGTCACAGTGCACTCATCTATACTGTAAGCCCTGTTTGACATACGTCGTGAGCACTACCAAAGCGTGTCCATACGATGGCTACTTAGTGACAGAAGCCGATGCGAAGCCCCTCGTTGAATCAAATAAAGCGCTCGCTGAAACCATAGGGAAAATAGCAGTTCATTGCCTGTATCACAGGAGTGGGTGCACATGGCAGGGGCCTTTATCTGATTGCACATCTCATTGTTCTGGTTGTGCCTTTGGAAATTCTCCTGTAGTCTGCAACAGGTGTGGAATCCAAATTGTGCATCGTCAAGTGCAGGAACACGCACAAAGTTGCCCTGGTGTGCAGCCCCAAGCACAGCAGGCAGAGGGTGTTCCAGACACTTCAGCCTCTGGCACAGCTGCTACTGCCAATCAGAACCAGGCTGCCACTCAGACAGGTACAGTGACATCTCAGACACAGGCTCCCCAAACTGCAAGTGGCACTATACCTGGAGCTGATTCGAATTCTCAGGCTCAAGCTGTTGCTAATCCACCCTATGGGACTGTTCAGCCTCAACCGCAGGCATACCTGCAACCTCCGCTCCTACCTCAACCTCAACCTCAACCTCAACCTCAACCACAGACCCAACCATCTCAATCTCAAGCTCAACCCCAACCGCAAGTTCAGCCCCCAATTATGCAGGCTCATATGGCTGCGCATACTCAAAACCAGACATCAGTTAATCAACAGCTTCAACTTCAGCCTGCTATGGCACCACATTCACAAATTCAAGCACAGTCTTACCCATCAGCTCATGGGCAGGCTCAACTTCCACCTCAAGCATATTTCCAAGTCCAAATGCCTCAATATCAGCAGCCACAAGTTCAGCAGCTTACACAGTCCCAGCTTCAACAGAATCCCCAACTTCACCCTGCTCTCAGCAGCCTCCCAGCAACGTACTATGCAGGTGCAATCTCAAGGAGTGCCCAACTCTCAGTCGCAAAACCATGTGCAGACTCAGATTCAGTTCCCTCAGCAACCCCTTTGCGACCACCCCCGTTTCAAACAATAGTTCCAAACCAGCAGCAGACAGCCTTGTTGCCTTCACCTAACGTCATCTCTGCACAACAGCCTCCAGTTCACTCCTTTGCTCAACAATCTGGAATTCCTGTTCTCCAGCGCCCTGCAATGCAGCCAGTCCAACAGCTAAATCCTCAGCAATATTTCCACATACAACCCCCCACATTGTCGCAATTACGTCCCCAGGGCCAATCTCAATCATTCCCACAACATATTCGTGCCTCGAACCAGTCTCAGCAGAATGTTGTATTGACTCAGGGCATGCAGCATATTCAGCCCTCAAATCTTGTGGGACGGCCTATGATGCCAAGTCATGGAGTACTACCTCAGCCATATGCACAAACAGTAGGAGGAGTTCTGCCAAGACCAATGTATCCTGCTCTAAACCATCAATCTACAAATCAGAATAATATAGGCAGAACCAACAACCAAGTGCAACTGGGAGCAAATTCAAGACCAACAATGACCGCAAGGCCAGCAGAGAAAGAAGCTGAGTTACCTGCTAATAATGTTGCACAGAATTTGGGTGTATTGTTTGCTGTAGGTGCTGATTCCGAGGTTAAAACTGTGAAATCTGAGGTGGATATGAAGGCCATTGATGTTGGAAATAAACCTTCTTCTGAAGATAGAAGTTATCAGGGTAATACATCTGCCAAAGAGATTCCGGAGTCTAGGGGGATGTTGGGGGTGAATGGAGAGTCTGAAAGTAAGCCAACATTGAAGGAAGAGGGTGTAAATAGTACTTTGGAGGATTCAAGTAATGATAAATTGGGTGAACTTGTAGCTGAAGGTGCAAAAGATGTTCCCAGCAGTGGCATGAAACAGGGGGAGTGTAAAGAAATGCCGTCAGAAGAAGCACAACTTCATGGAGTAAAGGATCAAAAATTGCAAAAAGATGCTAGTGGCACCGAGGAGGGTTCCCAAACTGTTTCTACTTCTTCAGCTCCTATAGGTCAAGTACAAGCTGGCGGCTTAATGCAACCTTCATATCCTGGTTCTGCTATACTCCAGCAAAGGCCAGGTGCATCTCCTTCGTTACAAGTGCCTTCTTCAGGGCCTCCACATCATATACCGGGTTCTGGACAACCCTTAATTCATGCAAGGCCTCAGGAACCTGGACATGTGCCTGGGCAGGCTTCTCATCTATCTGAGCATTTTCAATCACCTAGGGGAAACCTGGGATTTGCAGCATCATCTGCAGGTACAAGTCAGCATGGGCCTTATAACCAAAGCCATGGGCCTCCTCATCCAGGGGCACCCAGAGGTCCACCATTTGGAGCACCACCTAGTGCTTTTGATTTTCATGGGGGTATAATGGCCCGAGCAACACCCCATGGCCATGAAGGTCAGAGGGGTCAGCAGCGGCCAGCTTTTCAGATGGAACAGGGAGCAACTGGACAGCCATCCTCAAACATGCTCAGAATGAATGGAAATCCAGGCTTCGAATCCTTATCAACTCCCGGGTTGAGGGATGAAAGATTTAAGGCTTTGCCGGATGGGAGGTTGAATCCCTTCCCAGGAGACCCAACTCGTGTGATTAATCGATTAGGGTTTGAAGATGATCTCAAGCAATTCCCTAGGCCTTCTTATCTGGATTCTGAGCCTCTTCCAAAATTAGGGAGTTACTCCTCTAGAGCCTTCGATAGGAGACCTCTTGGAGTCAATTATGATACTCGTCTAAATTCAGATCCTGCAGCTGGCTCTGCTCCAAGGTTCCTGTCTCCCTATGGTCATGGTGGATTGATTCATGCCAATGATACAGGTGGTCACCCAGATTTTGGTGGACAGCGCCTTATGGATGGTTTGGCTCGACGAAGTCCAATCAGAGATTACCCTGGCATCCCATCTCGTGGATTTAGGGGATTTGGCCCTGATGATTTTGATGGCAGGGATTTCCATCGATTTGGTGATCCGCTTGGCAGGGAATTCCATGAGAATAGGTTTCCTAATATGCACAGTCATTTTCATAGGGGTGAGTTTGAGGGTCCTGGTAATATGCGAATGGATGATCGTATGAGGAACGATTTGATTGGTCACCCTGGTCATCTGCGGAGGGGGGAGATCATTTGGGTCCTCATAACTTGCCTGGTCATTTGCATTTGCGAGAGCATGTGGGTTTTGGTGTCCATCCTCGACATGCAGGGCCTGGGAGCTTTGAATCATTTATTGGCAACAGGGCAAGTCATCCACGTCTTGGCGAGCCTGGATTTAGGAGCAGCTTTTCACTTCAGAGATTTCCAAATGATGGAACTTATACAGTTAAGTATTTACTTCAAGTCATTGGGAGAGCTAGAGTCTTTTGATCACTCAAGGAAAAGGAAACCAGCCAGCATGGGATGGTGTCGTATCTGTAAAGTTGACTGTGAAACAGTTGAGGGCTTGGACGTGCATTCACAAACAAGGGAGCACCAGAGAATGGCTATGGAAATGGTACAAAGTATCAAGCAGAATGCCAAAAAACAGAAATTAACCTCTGGTGATCAGTCCTTGGTAGAGGATGCTAACAAGTCAAAGATTTCCAGTTTTGAGAGCCGGGTTGAAAAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000793 GO:0000794 GO:0001701 GO:0001756 GO:0001932 GO:0002020 GO:0002791 GO:0002793 GO:0003002 GO:0003007 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003300 GO:0003674 GO:0003779 GO:0003824 GO:0004672 GO:0004674 GO:0004713 GO:0005198 GO:0005200 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005856 GO:0005859 GO:0005865 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006936 GO:0006941 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0007399 GO:0007417 GO:0007420 GO:0007507 GO:0007512 GO:0007517 GO:0008015 GO:0008092 GO:0008150 GO:0008152 GO:0008307 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009888 GO:0009893 GO:0009952 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010604 GO:0010628 GO:0010737 GO:0010927 GO:0014706 GO:0014866 GO:0014896 GO:0014897 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016459 GO:0016460 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0021591 GO:0022607 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030036 GO:0030154 GO:0030239 GO:0030240 GO:0030241 GO:0030506 GO:0031032 GO:0031033 GO:0031034 GO:0031323 GO:0031399 GO:0031430 GO:0031433 GO:0031672 GO:0031674 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033058 GO:0034622 GO:0035051 GO:0035265 GO:0035282 GO:0035556 GO:0035994 GO:0035995 GO:0036211 GO:0036379 GO:0040007 GO:0040011 GO:0042221 GO:0042325 GO:0042692 GO:0042802 GO:0042805 GO:0043009 GO:0043056 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043292 GO:0043412 GO:0043549 GO:0043621 GO:0043933 GO:0044057 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0044877 GO:0045214 GO:0045859 GO:0046872 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048644 GO:0048646 GO:0048729 GO:0048731 GO:0048738 GO:0048739 GO:0048747 GO:0048769 GO:0048856 GO:0048869 GO:0050708 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050982 GO:0051015 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051146 GO:0051171 GO:0051174 GO:0051222 GO:0051223 GO:0051239 GO:0051246 GO:0051338 GO:0051371 GO:0051393 GO:0051592 GO:0051606 GO:0051716 GO:0055001 GO:0055002 GO:0055003 GO:0055006 GO:0055007 GO:0055008 GO:0055013 GO:0060047 GO:0060048 GO:0060255 GO:0060322 GO:0060415 GO:0060419 GO:0060429 GO:0060537 GO:0061053 GO:0061061 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070925 GO:0071688 GO:0071704 GO:0071840 GO:0072359 GO:0080090 GO:0090087 GO:0090257 GO:0097435 GO:0097493 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901077 GO:1901564 GO:1901897 GO:1903530 GO:1903532 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1240

Amino Acids

134.37

Weight (kDa)

6.61

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2397
AarI CACCTGC 1 cut(s) 1049
Acc16I TGCGCA 1 cut(s) 810
Acc36I ACCTGC 4 cut(s) 690, 1049, 1681, 2363
AccB1I GGYRCC 3 cut(s) 865, 2078, 2428
AccB7I CCANNNNNTGG 9 cut(s) 203, 650, 1487, 2447, 2951, 3023, 3367, 3418, 3589
AccBSI CCGCTC 1 cut(s) 694
AccI GTMKAC 1 cut(s) 108
AccIII TCCGGA 1 cut(s) 1837
AciI CCGC 9 cut(s) 71, 671, 692, 770, 1641, 2142, 2536, 3086, 3223
AclWI GGATC 3 cut(s) 2058, 2855, 3077
AcoI YGGCCR 2 cut(s) 2509, 2537
AcsI RAATTY 8 cut(s) 373, 616, 879, 1257, 1621, 1693, 2854, 3098
AcuI CTGAAG 7 cut(s) 480, 836, 1815, 1980, 2097, 2208, 3385
AdeI CACNNNGTG 1 cut(s) 2462
AfaI GTAC 8 cut(s) 80, 553, 1052, 1494, 1915, 2133, 2377, 3606
AfeI AGCGCT 1 cut(s) 258
AflIII ACRYGT 1 cut(s) 2293
AjiI CACGTC 2 cut(s) 3364, 3559
AjuI GAANNNNNNNTTGG 4 cut(s) 759, 791, 3323, 3355
AleI CACNNNNGTG 1 cut(s) 306
AloI GAACNNNNNNTCC 2 cut(s) 1248, 1280
Alw21I GWGCWC 5 cut(s) 140, 182, 317, 2455, 3582
Alw26I GTCTC 4 cut(s) 1410, 2688, 2815, 2898
Alw44I GTGCAC 2 cut(s) 136, 313
AlwI GGATC 3 cut(s) 2058, 2855, 3077
AlwNI CAGNNNCTG 3 cut(s) 503, 2864, 3319
Ama87I CYCGRG 2 cut(s) 2493, 2633
Aor13HI TCCGGA 1 cut(s) 1837
Aor51HI AGCGCT 1 cut(s) 258
ApaLI GTGCAC 2 cut(s) 136, 313
ApoI RAATTY 8 cut(s) 373, 616, 879, 1257, 1621, 1693, 2854, 3098
AseI ATTAAT 1 cut(s) 2712
Asp700I GAANNNNTTC 1 cut(s) 2684
AspA2I CCTAGG 2 cut(s) 2339, 2750
AspLEI GCGC 4 cut(s) 259, 811, 1275, 2964
AsuC2I CCSGG 5 cut(s) 89, 2247, 2634, 2635, 3707
AsuII TTCGAA 2 cut(s) 614, 2616
AvaI CYCGRG 2 cut(s) 2493, 2633
AvaII GGWCC 3 cut(s) 2438, 3158, 3244
AvrII CCTAGG 2 cut(s) 2339, 2750
AxyI CCTNAGG 1 cut(s) 2280
BaeGI GKGCMC 4 cut(s) 140, 317, 1081, 2431
BaeI ACNNNNGTAYC 2 cut(s) 1529, 1562
BalI TGGCCA 1 cut(s) 2511
BanI GGYRCC 3 cut(s) 865, 2078, 2428
BarI GAAGNNNNNNTAC 2 cut(s) 1653, 1685
BauI CACGAG 2 cut(s) 2703, 3021
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 5 cut(s) 140, 182, 317, 2455, 3582
BbvCI CCTCAGC 3 cut(s) 1126, 1308, 1500
BceAI ACGGC 2 cut(s) 1484, 2002
BcgI CGANNNNNNTGC 2 cut(s) 2187, 2221
BciVI GTATCC 1 cut(s) 1557
BclI TGATCA 2 cut(s) 3475, 3652
BcnI CCSGG 5 cut(s) 89, 2247, 2634, 2635, 3707
BcoDI GTCTC 4 cut(s) 1410, 2688, 2815, 2898
BfaI CTAG 7 cut(s) 1845, 2073, 2340, 2460, 2751, 2805, 3464
BfmI CTRYAG 5 cut(s) 381, 1713, 2121, 2370, 2865
BfoI RGCGCY 3 cut(s) 260, 1276, 2965
BfuAI ACCTGC 4 cut(s) 690, 1049, 1681, 2363
BfuI GTATCC 1 cut(s) 1557
BlnI CCTAGG 2 cut(s) 2339, 2750
BmcAI AGTACT 3 cut(s) 80, 1494, 1915
Bme18I GGWCC 3 cut(s) 2438, 3158, 3244
BmeT110I CYCGRG 2 cut(s) 2493, 2633
BmgBI CACGTC 2 cut(s) 3364, 3559
BmrI ACTGGG 1 cut(s) 1622
BmsI GCATC 9 cut(s) 7, 217, 424, 1467, 2059, 2207, 2372, 3021, 3661
BmuI ACTGGG 1 cut(s) 1622
BoxI GACNNNNGTC 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 4 cut(s) 624, 1212, 1253, 2165
Bpu10I CCTNAGC 3 cut(s) 1126, 1308, 1500
Bpu14I TTCGAA 2 cut(s) 614, 2616
BpuEI CTTGAG 6 cut(s) 612, 738, 915, 1054, 2723, 3466
BpuMI CCSGG 5 cut(s) 89, 2247, 2634, 2635, 3707
Bsa29I ATCGAT 2 cut(s) 2716, 3073
BsaBI GATNNNNATC 1 cut(s) 3069
BsaI GGTCTC 2 cut(s) 2688, 2815
BsaWI WCCGGW 1 cut(s) 1837
BsaXI ACNNNNNCTCC 4 cut(s) 559, 589, 678, 708
Bse1I ACTGG 6 cut(s) 1229, 1289, 1402, 1617, 2572, 3693
Bse21I CCTNAGG 1 cut(s) 2280
Bse3DI GCAATG 3 cut(s) 122, 289, 1287
Bse8I GATNNNNATC 1 cut(s) 3069
BseAI TCCGGA 1 cut(s) 1837
BseCI ATCGAT 2 cut(s) 2716, 3073
BseJI GATNNNNATC 1 cut(s) 3069
BseMI GCAATG 3 cut(s) 122, 289, 1287
BseNI ACTGG 6 cut(s) 1229, 1289, 1402, 1617, 2572, 3693
BseRI GAGGAG 4 cut(s) 1539, 2099, 2406, 2791
BseSI GKGCMC 4 cut(s) 140, 317, 1081, 2431
BseYI CCCAGC 3 cut(s) 996, 1042, 1979
BsgI GTGCAG 4 cut(s) 446, 476, 1125, 1200
BshNI GGYRCC 3 cut(s) 865, 2078, 2428
BshVI ATCGAT 2 cut(s) 2716, 3073
BsiHKAI GWGCWC 5 cut(s) 140, 182, 317, 2455, 3582
BsiHKCI CYCGRG 2 cut(s) 2493, 2633
BsiSI CCGG 6 cut(s) 89, 1838, 2246, 2634, 2666, 3706
BslFI GGGAC 4 cut(s) 667, 979, 1338, 1479
BsmAI GTCTC 4 cut(s) 1410, 2688, 2815, 2898
BsmFI GGGAC 4 cut(s) 667, 979, 1338, 1479
BsmI GAATGC 2 cut(s) 3562, 3628
Bso31I GGTCTC 2 cut(s) 2688, 2815
BsoBI CYCGRG 2 cut(s) 2493, 2633
Bsp119I TTCGAA 2 cut(s) 614, 2616
Bsp1286I GDGCHC 7 cut(s) 140, 182, 317, 1081, 2431, 2455, 3582
Bsp13I TCCGGA 1 cut(s) 1837
Bsp143I GATC 8 cut(s) 2050, 2734, 2860, 3082, 3181, 3234, 3475, 3652
Bsp19I CCATGG 2 cut(s) 2407, 2506
BspACI CCGC 9 cut(s) 71, 671, 692, 770, 1641, 2142, 2536, 3086, 3223
BspDI ATCGAT 2 cut(s) 2716, 3073
BspEI TCCGGA 1 cut(s) 1837
BspMAI CTGCAG 2 cut(s) 2374, 2869
BspMI ACCTGC 4 cut(s) 690, 1049, 1681, 2363
BspPI GGATC 3 cut(s) 2058, 2855, 3077
BspT104I TTCGAA 2 cut(s) 614, 2616
BspT107I GGYRCC 3 cut(s) 865, 2078, 2428
BspTNI GGTCTC 2 cut(s) 2688, 2815
BsrBI CCGCTC 1 cut(s) 694
BsrDI GCAATG 3 cut(s) 122, 289, 1287
BsrI ACTGG 6 cut(s) 1229, 1289, 1402, 1617, 2572, 3693
BssMI GATC 8 cut(s) 2050, 2734, 2860, 3082, 3181, 3234, 3475, 3652
BssSI CACGAG 2 cut(s) 2703, 3021
BssT1I CCWWGG 6 cut(s) 2339, 2407, 2506, 2750, 2882, 3660
Bst2BI CACGAG 2 cut(s) 2703, 3021
Bst6I CTCTTC 2 cut(s) 1893, 2784
BstAPI GCANNNNNTGC 1 cut(s) 2369
BstBI TTCGAA 2 cut(s) 614, 2616
BstDSI CCRYGG 2 cut(s) 2407, 2506
BstEII GGTNACC 2 cut(s) 2939, 3206
BstENI CCTNNNNNAGG 3 cut(s) 2223, 2421, 2815
BstH2I RGCGCY 3 cut(s) 260, 1276, 2965
BstHHI GCGC 4 cut(s) 259, 811, 1275, 2964
BstKTI GATC 8 cut(s) 2053, 2737, 2863, 3085, 3184, 3237, 3478, 3655
BstMAI GTCTC 4 cut(s) 1410, 2688, 2815, 2898
BstMBI GATC 8 cut(s) 2050, 2734, 2860, 3082, 3181, 3234, 3475, 3652
BstNSI RCATGY 5 cut(s) 1438, 2297, 2590, 3286, 3313
BstPAI GACNNNNGTC 1 cut(s) 170
BstPI GGTNACC 2 cut(s) 2939, 3206
BstSFI CTRYAG 5 cut(s) 381, 1713, 2121, 2370, 2865
BstSLI GKGCMC 4 cut(s) 140, 317, 1081, 2431
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 2860
BstXI CCANNNNNNTGG 2 cut(s) 2408, 3077
BstYI RGATCY 1 cut(s) 2860
Bsu15I ATCGAT 2 cut(s) 2716, 3073
Bsu36I CCTNAGG 1 cut(s) 2280
BsuI GTATCC 1 cut(s) 1557
BsuTUI ATCGAT 2 cut(s) 2716, 3073
BtgI CCRYGG 2 cut(s) 2407, 2506
BtrI CACGTC 2 cut(s) 3364, 3559
BtsI GCAGTG 1 cut(s) 1990
BtsIMutI CAGTG 3 cut(s) 140, 561, 1990
BveI ACCTGC 4 cut(s) 690, 1049, 1681, 2363
CaiI CAGNNNCTG 3 cut(s) 503, 2864, 3319
CfoI GCGC 4 cut(s) 259, 811, 1275, 2964
Cfr9I CCCGGG 1 cut(s) 2633
ClaI ATCGAT 2 cut(s) 2716, 3073
Csp6I GTAC 8 cut(s) 79, 552, 1051, 1493, 1914, 2132, 2376, 3605
CspCI CAANNNNNGTGG 4 cut(s) 379, 414, 1443, 1478
CviQI GTAC 8 cut(s) 79, 552, 1051, 1493, 1914, 2132, 2376, 3605
DpnI GATC 8 cut(s) 2052, 2736, 2862, 3084, 3183, 3236, 3477, 3654
DpnII GATC 8 cut(s) 2050, 2734, 2860, 3082, 3181, 3234, 3475, 3652
DraIII CACNNNGTG 1 cut(s) 2462
EaeI YGGCCR 2 cut(s) 2509, 2537
Eam1104I CTCTTC 2 cut(s) 1893, 2784
EarI CTCTTC 2 cut(s) 1893, 2784
Eco130I CCWWGG 6 cut(s) 2339, 2407, 2506, 2750, 2882, 3660
Eco147I AGGCCT 2 cut(s) 2278, 2755
Eco31I GGTCTC 2 cut(s) 2688, 2815
Eco47I GGWCC 3 cut(s) 2438, 3158, 3244
Eco47III AGCGCT 1 cut(s) 258
Eco57I CTGAAG 7 cut(s) 480, 836, 1815, 1980, 2097, 2208, 3385
Eco81I CCTNAGG 1 cut(s) 2280
Eco88I CYCGRG 2 cut(s) 2493, 2633
Eco91I GGTNACC 2 cut(s) 2939, 3206
EcoNI CCTNNNNNAGG 3 cut(s) 2223, 2421, 2815
EcoO109I RGGNCCY 5 cut(s) 326, 2228, 3158, 3244, 3316
EcoO65I GGTNACC 2 cut(s) 2939, 3206
EcoRI GAATTC 3 cut(s) 616, 1257, 3098
EcoT14I CCWWGG 6 cut(s) 2339, 2407, 2506, 2750, 2882, 3660
ErhI CCWWGG 6 cut(s) 2339, 2407, 2506, 2750, 2882, 3660
FalI AAGNNNNNCTT 2 cut(s) 2019, 2051
FaqI GGGAC 4 cut(s) 667, 979, 1338, 1479
FauI CCCGC 1 cut(s) 64
FauNDI CATATG 2 cut(s) 801, 1507
FbaI TGATCA 2 cut(s) 3475, 3652
FblI GTMKAC 1 cut(s) 108
FspBI CTAG 7 cut(s) 1845, 2073, 2340, 2460, 2751, 2805, 3464
FspI TGCGCA 1 cut(s) 810
GlaI GCGC 4 cut(s) 258, 810, 1274, 2963
GsaI CCCAGC 3 cut(s) 1000, 1046, 1983
GsuI CTGGAG 4 cut(s) 624, 1212, 1253, 2165
HaeII RGCGCY 3 cut(s) 260, 1276, 2965
HapII CCGG 6 cut(s) 89, 1838, 2246, 2634, 2666, 3706
HhaI GCGC 4 cut(s) 259, 811, 1275, 2964
Hin6I GCGC 4 cut(s) 257, 809, 1273, 2962
HinP1I GCGC 4 cut(s) 257, 809, 1273, 2962
HincII GTYRAC 1 cut(s) 3532
HindII GTYRAC 1 cut(s) 3532
HpaII CCGG 6 cut(s) 89, 1838, 2246, 2634, 2666, 3706
Hpy166II GTNNAC 8 cut(s) 109, 138, 315, 1234, 1949, 2441, 2957, 3532
Hpy188III TCNNGA 9 cut(s) 175, 488, 1254, 1626, 1838, 2253, 2282, 2765, 2805
Hpy8I GTNNAC 8 cut(s) 109, 138, 315, 1234, 1949, 2441, 2957, 3532
Hpy99I CGWCG 2 cut(s) 176, 2988
HpyCH4IV ACGT 6 cut(s) 171, 1049, 1206, 1351, 3363, 3558
HpySE526I ACGT 6 cut(s) 171, 1049, 1206, 1351, 3363, 3558
HspAI GCGC 4 cut(s) 257, 809, 1273, 2962
Kpn2I TCCGGA 1 cut(s) 1837
Ksp22I TGATCA 2 cut(s) 3475, 3652
Kzo9I GATC 8 cut(s) 2050, 2734, 2860, 3082, 3181, 3234, 3475, 3652
LweI GCATC 9 cut(s) 7, 217, 424, 1467, 2059, 2207, 2372, 3021, 3661
MaeI CTAG 7 cut(s) 1845, 2073, 2340, 2460, 2751, 2805, 3464
MaeII ACGT 6 cut(s) 171, 1049, 1206, 1351, 3363, 3558
MaeIII GTNAC 8 cut(s) 129, 214, 556, 1668, 2208, 2795, 2939, 3206
MalI GATC 8 cut(s) 2052, 2736, 2862, 3084, 3183, 3236, 3477, 3654
MbiI CCGCTC 1 cut(s) 694
MboI GATC 8 cut(s) 2050, 2734, 2860, 3082, 3181, 3234, 3475, 3652
MboII GAAGA 9 cut(s) 92, 1782, 1808, 1910, 2036, 2103, 2214, 2741, 2771
MflI RGATCY 1 cut(s) 2860
MhlI GDGCHC 7 cut(s) 140, 182, 317, 1081, 2431, 2455, 3582
MlsI TGGCCA 1 cut(s) 2511
MluNI TGGCCA 1 cut(s) 2511
MlyI GAGTC 6 cut(s) 1103, 1420, 1850, 1880, 2841, 3476
MmeI TCCRAC 2 cut(s) 1318, 1756
Mox20I TGGCCA 1 cut(s) 2511
MroI TCCGGA 1 cut(s) 1837
MroXI GAANNNNTTC 1 cut(s) 2684
MscI TGGCCA 1 cut(s) 2511
MseI TTAA 8 cut(s) 834, 1734, 2147, 2264, 2655, 2712, 3434, 3641
MslI CAYNNNNRTG 5 cut(s) 306, 1389, 2511, 2925, 3144
Msp20I TGGCCA 1 cut(s) 2511
MspA1I CMGCKG 3 cut(s) 512, 2536, 2870
MspI CCGG 6 cut(s) 89, 1838, 2246, 2634, 2666, 3706
Mva1269I GAATGC 2 cut(s) 3562, 3628
NciI CCSGG 5 cut(s) 89, 2247, 2634, 2635, 3707
NcoI CCATGG 2 cut(s) 2407, 2506
NdeI CATATG 2 cut(s) 801, 1507
NdeII GATC 8 cut(s) 2050, 2734, 2860, 3082, 3181, 3234, 3475, 3652
NmuCI GTSAC 5 cut(s) 129, 214, 556, 2939, 3206
NsbI TGCGCA 1 cut(s) 810
NspI RCATGY 5 cut(s) 1438, 2297, 2590, 3286, 3313
NspV TTCGAA 2 cut(s) 614, 2616
OliI CACNNNNGTG 1 cut(s) 306
PaeI GCATGC 1 cut(s) 1438
PaqCI CACCTGC 1 cut(s) 1049
PasI CCCWGGG 1 cut(s) 1357
PceI AGGCCT 2 cut(s) 2278, 2755
PciI ACATGT 1 cut(s) 2293
PctI GAATGC 2 cut(s) 3562, 3628
PdmI GAANNNNTTC 1 cut(s) 2684
PflFI GACNNNGTC 1 cut(s) 2988
PflMI CCANNNNNTGG 9 cut(s) 203, 650, 1487, 2447, 2951, 3023, 3367, 3418, 3589
PleI GAGTC 6 cut(s) 1103, 1420, 1849, 1879, 2840, 3475
PpsI GAGTC 6 cut(s) 1103, 1420, 1849, 1879, 2840, 3475
PpuMI RGGWCCY 2 cut(s) 3158, 3244
PscI ACATGT 1 cut(s) 2293
PshAI GACNNNNGTC 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 2712
PsiI TTATAA 1 cut(s) 2397
Psp5II RGGWCCY 2 cut(s) 3158, 3244
PspEI GGTNACC 2 cut(s) 2939, 3206
PspFI CCCAGC 3 cut(s) 996, 1042, 1979
PspPPI RGGWCCY 2 cut(s) 3158, 3244
PsrI GAACNNNNNNTAC 2 cut(s) 1512, 1544
PstI CTGCAG 2 cut(s) 2374, 2869
PstNI CAGNNNCTG 3 cut(s) 503, 2864, 3319
PsuI RGATCY 1 cut(s) 2860
PsyI GACNNNGTC 1 cut(s) 2988
PvuII CAGCTG 2 cut(s) 512, 2870
RsaI GTAC 8 cut(s) 80, 553, 1052, 1494, 1915, 2133, 2377, 3606
RsaNI GTAC 8 cut(s) 79, 552, 1051, 1493, 1914, 2132, 2376, 3605
RseI CAYNNNNRTG 5 cut(s) 306, 1389, 2511, 2925, 3144
SaqAI TTAA 8 cut(s) 834, 1734, 2147, 2264, 2655, 2712, 3434, 3641
Sau3AI GATC 8 cut(s) 2050, 2734, 2860, 3082, 3181, 3234, 3475, 3652
ScaI AGTACT 3 cut(s) 80, 1494, 1915
SchI GAGTC 6 cut(s) 1103, 1420, 1850, 1880, 2841, 3476
SduI GDGCHC 7 cut(s) 140, 182, 317, 1081, 2431, 2455, 3582
SfaNI GCATC 9 cut(s) 7, 217, 424, 1467, 2059, 2207, 2372, 3021, 3661
SfcI CTRYAG 5 cut(s) 381, 1713, 2121, 2370, 2865
SfuI TTCGAA 2 cut(s) 614, 2616
SinI GGWCC 3 cut(s) 2438, 3158, 3244
SmaI CCCGGG 1 cut(s) 2635
SmiMI CAYNNNNRTG 5 cut(s) 306, 1389, 2511, 2925, 3144
SmlI CTYRAG 6 cut(s) 627, 753, 930, 1069, 2738, 3481
SmoI CTYRAG 6 cut(s) 627, 753, 930, 1069, 2738, 3481
SphI GCATGC 1 cut(s) 1438
SseBI AGGCCT 2 cut(s) 2278, 2755
SsiI CCGC 9 cut(s) 71, 671, 692, 770, 1641, 2142, 2536, 3086, 3223
SspI AATATT 1 cut(s) 1316
SspMI CTAG 7 cut(s) 1845, 2073, 2340, 2460, 2751, 2805, 3464
StuI AGGCCT 2 cut(s) 2278, 2755
StyI CCWWGG 6 cut(s) 2339, 2407, 2506, 2750, 2882, 3660
TaiI ACGT 6 cut(s) 174, 1052, 1209, 1354, 3366, 3561
TaqI TCGA 8 cut(s) 614, 1397, 2616, 2716, 2814, 2983, 3073, 3306
TatI WGTACW 4 cut(s) 78, 1492, 1913, 2131
TauI GCSGC 2 cut(s) 2145, 2539
Tru1I TTAA 8 cut(s) 834, 1734, 2147, 2264, 2655, 2712, 3434, 3641
Tru9I TTAA 8 cut(s) 834, 1734, 2147, 2264, 2655, 2712, 3434, 3641
TscAI CASTG 3 cut(s) 140, 561, 1990
TseFI GTSAC 5 cut(s) 129, 214, 556, 2939, 3206
Tsp45I GTSAC 5 cut(s) 129, 214, 556, 2939, 3206
TspMI CCCGGG 1 cut(s) 2633
TspRI CASTG 3 cut(s) 140, 561, 1990
Tth111I GACNNNGTC 1 cut(s) 2988
Van91I CCANNNNNTGG 9 cut(s) 203, 650, 1487, 2447, 2951, 3023, 3367, 3418, 3589
VneI GTGCAC 2 cut(s) 136, 313
VpaK11BI GGWCC 3 cut(s) 2438, 3158, 3244
VspI ATTAAT 1 cut(s) 2712
XagI CCTNNNNNAGG 3 cut(s) 2223, 2421, 2815
XapI RAATTY 8 cut(s) 373, 616, 879, 1257, 1621, 1693, 2854, 3098
XbaI TCTAGA 1 cut(s) 2804
XceI RCATGY 5 cut(s) 1438, 2297, 2590, 3286, 3313
XcmI CCANNNNNNNNNTGG 1 cut(s) 587
XmaI CCCGGG 1 cut(s) 2633
XmaJI CCTAGG 2 cut(s) 2339, 2750
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 2684
XspI CTAG 7 cut(s) 1845, 2073, 2340, 2460, 2751, 2805, 3464
ZrmI AGTACT 3 cut(s) 80, 1494, 1915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.