Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Forward (+)

655821 .. 656641

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCAACTAGTACTAGAAGTAGAGTACTCGAAATAGTTTCGATGCTCTTTGTGGTGATCATGATCATGTTCACCAAAATTGGGGATGTATCAGCTGATGCTGGTGCTTGCCCAAAATGTGGTAGCCTAGAAGTTCCATACCCTTTTAGCACTGATGCTAGTTGTGGAGACCCAAGATACAAAATCTACTGCAACAATGCCAATGAACTTCAGTTCATGTCAGCTAAAGGGTTTAAATACAAGATCCTCAGCTTCGACTTGAGTGTCAACAAGCTCATTATACTCCCACCTGATTTGTTAGTATTGAATGATAACACTCCCACATGTTATTCTTCAGATTTCTCATCACAAGGCTTAACACTCGATGAGCAATTGCCCTTCAACATTTCTACTCGTAACACTGTGATGCTGCTGTTCAATTGCTCGGATAATCTTCTTCGCTCGCCTCTAAATTGTTCCTCAAGCAGCTTTTGTAGGCAGTTTGAGGATAAGATAGAGGCATGCAGAGGTACCCTTTGCTGCCATTTCTTGAAGGATTCTCGCATGACTTCATATATGATCAGGGTCAGGCTTGGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

194

Amino Acids

21.56

Weight (kDa)

7.42

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	37 - 92	3.9e-10	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	119
AclWI	GGATC	1 cut(s)	238
AcuI	CTGAAG	2 cut(s)	194, 318
AfaI	GTAC	3 cut(s)	13, 27, 511
AfiI	CCNNNNNNNGG	2 cut(s)	81, 119
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	4 cut(s)	307, 382, 418, 532
AhlI	ACTAGT	1 cut(s)	8
AluBI	AGCT	5 cut(s)	95, 224, 252, 274, 468
AluI	AGCT	5 cut(s)	95, 224, 252, 274, 468
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	238
ApeKI	GCWGC	3 cut(s)	409, 465, 519
Asp718I	GGTACC	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	64, 67
BanI	GGYRCC	1 cut(s)	509
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	3 cut(s)	396, 477, 506
BclI	TGATCA	3 cut(s)	57, 63, 558
BcoDI	GTCTC	1 cut(s)	162
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	4 cut(s)	9, 15, 128, 159
BisI	GCNGC	3 cut(s)	410, 466, 520
BlsI	GCNGC	3 cut(s)	411, 467, 521
BmcAI	AGTACT	2 cut(s)	13, 27
BmiI	GGNNCC	2 cut(s)	511, 577
BmsI	GCATC	4 cut(s)	33, 88, 145, 396
Bpu10I	CCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	280, 445
BsaBI	GATNNNNATC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 119
Bse8I	GATNNNNATC	1 cut(s)	62
BseGI	GGATG	1 cut(s)	91
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	81, 119
BseMII	CTCAG	1 cut(s)	262
BseXI	GCAGC	3 cut(s)	396, 477, 506
BshNI	GGYRCC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	81, 119
BsmAI	GTCTC	1 cut(s)	162
Bso31I	GGTCTC	1 cut(s)	162
Bsp143I	GATC	4 cut(s)	57, 63, 243, 558
BspCNI	CTCAG	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	511, 577
BspPI	GGATC	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	162
BssMI	GATC	4 cut(s)	57, 63, 243, 558
Bst4CI	ACNGT	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	109, 443, 502
BstDEI	CTNAG	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	4 cut(s)	60, 66, 246, 561
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	4 cut(s)	57, 63, 243, 558
BstNSI	RCATGY	2 cut(s)	327, 504
BstV1I	GCAGC	3 cut(s)	396, 477, 506
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	150, 399
Cac8I	GCNNGC	3 cut(s)	109, 443, 502
CciI	TCATGA	1 cut(s)	60
Csp6I	GTAC	3 cut(s)	12, 26, 510
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	6 cut(s)	61, 67, 217, 324, 501, 544
CviJI	RGCY	8 cut(s)	95, 126, 224, 252, 274, 354, 468, 571
CviKI_1	RGCY	8 cut(s)	95, 126, 224, 252, 274, 354, 468, 571
CviQI	GTAC	3 cut(s)	12, 26, 510
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	4 cut(s)	59, 65, 245, 560
DpnII	GATC	4 cut(s)	57, 63, 243, 558
DraI	TTTAAA	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	162
Eco57I	CTGAAG	2 cut(s)	194, 318
FaeI	CATG	6 cut(s)	64, 70, 220, 327, 504, 547
FatI	CATG	6 cut(s)	60, 66, 216, 323, 500, 543
FbaI	TGATCA	3 cut(s)	57, 63, 558
Fnu4HI	GCNGC	3 cut(s)	410, 466, 520
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	3 cut(s)	410, 466, 520
FspBI	CTAG	4 cut(s)	9, 15, 128, 159
GluI	GCNGC	3 cut(s)	410, 466, 520
Hin1II	CATG	6 cut(s)	64, 70, 220, 327, 504, 547
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	1 cut(s)	536
HphI	GGTGA	2 cut(s)	64, 67
Hpy166II	GTNNAC	2 cut(s)	72, 268
Hpy188I	TCNGA	2 cut(s)	337, 427
Hpy188III	TCNNGA	2 cut(s)	61, 529
Hpy8I	GTNNAC	2 cut(s)	72, 268
HpyAV	CCTTC	2 cut(s)	388, 526
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	2 cut(s)	192, 504
HpyF3I	CTNAG	1 cut(s)	248
Hsp92II	CATG	6 cut(s)	64, 70, 220, 327, 504, 547
KpnI	GGTACC	1 cut(s)	513
Ksp22I	TGATCA	3 cut(s)	57, 63, 558
Kzo9I	GATC	4 cut(s)	57, 63, 243, 558
LpnPI	CCDG	4 cut(s)	87, 303, 547, 553
Lsp1109I	GCAGC	3 cut(s)	396, 477, 506
LweI	GCATC	4 cut(s)	33, 88, 145, 396
MaeI	CTAG	4 cut(s)	9, 15, 128, 159
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	4 cut(s)	59, 65, 245, 560
MboI	GATC	4 cut(s)	57, 63, 243, 558
MboII	GAAGA	3 cut(s)	324, 425, 428
MfeI	CAATTG	2 cut(s)	371, 418
MflI	RGATCY	1 cut(s)	243
MluCI	AATT	4 cut(s)	78, 371, 418, 451
MnlI	CCTC	6 cut(s)	257, 456, 469, 478, 490, 500
MseI	TTAA	2 cut(s)	234, 356
MslI	CAYNNNNRTG	2 cut(s)	65, 404
MspA1I	CMGCKG	1 cut(s)	95
MunI	CAATTG	2 cut(s)	371, 418
NdeII	GATC	4 cut(s)	57, 63, 243, 558
NlaIII	CATG	6 cut(s)	64, 70, 220, 327, 504, 547
NlaIV	GGNNCC	2 cut(s)	511, 577
NspI	RCATGY	2 cut(s)	327, 504
PaeI	GCATGC	1 cut(s)	504
PagI	TCATGA	1 cut(s)	60
PciI	ACATGT	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	411, 467, 521
PscI	ACATGT	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	511, 577
PsuI	RGATCY	1 cut(s)	243
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	3 cut(s)	13, 27, 511
RsaNI	GTAC	3 cut(s)	12, 26, 510
RseI	CAYNNNNRTG	2 cut(s)	65, 404
SaqAI	TTAA	2 cut(s)	234, 356
SatI	GCNGC	3 cut(s)	410, 466, 520
Sau3AI	GATC	4 cut(s)	57, 63, 243, 558
ScaI	AGTACT	2 cut(s)	13, 27
SetI	ASST	8 cut(s)	97, 226, 254, 276, 292, 470, 511, 581
SfaNI	GCATC	4 cut(s)	33, 88, 145, 396
SmiMI	CAYNNNNRTG	2 cut(s)	65, 404
SmlI	CTYRAG	2 cut(s)	259, 460
SmoI	CTYRAG	2 cut(s)	259, 460
SpeI	ACTAGT	1 cut(s)	8
SphI	GCATGC	1 cut(s)	504
Sse9I	AATT	4 cut(s)	78, 371, 418, 451
SspMI	CTAG	4 cut(s)	9, 15, 128, 159
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	4 cut(s)	30, 41, 255, 363
TasI	AATT	4 cut(s)	78, 371, 418, 451
TatI	WGTACW	2 cut(s)	11, 25
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	2 cut(s)	234, 356
Tru9I	TTAA	2 cut(s)	234, 356
TscAI	CASTG	2 cut(s)	157, 406
TseI	GCWGC	3 cut(s)	409, 465, 519
TspDTI	ATGAA	3 cut(s)	205, 219, 540
TspRI	CASTG	2 cut(s)	157, 406
Van91I	CCANNNNNTGG	1 cut(s)	119
XceI	RCATGY	2 cut(s)	327, 504
XspI	CTAG	4 cut(s)	9, 15, 128, 159
ZrmI	AGTACT	2 cut(s)	13, 27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.