Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Forward (+)

6008065 .. 6008730

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG076200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTAACCAGCACTAGTAGAGTGCTCGAAATAATTTCGATGTTATTTGTGGTGATCATTATCATGATCACCAAAATGGGGCATGTATCAGCTGATCTTGGTGCTTGCCCAAAATGTGGTAGCCTAGAAGTTCCATACCCTTTTAGCACTGATGATAGTTGTGGAGACCCTAGATACAAAATCTACTGCAACAATGGCAATGAACTTCAGTTCATGTCAGCTGAAGGGTTTAAGTACAAGATCCTCAGCATCGACTCGAGTGCCAACAAGCTCATTATACACCCACCTGATTTCTTAGTAGAGAATAACACTCCTACATGTTATTCTTCAGATTTCTCTTCACAAGGCTTAAGACTCGATGAACACTTGCCCTTCAACATTTCTACTCATAACACCGTGATGCTGTTCAATTGCTCGGATAATATTCTCCTCTCGCCTCTAAATTGTTCCTCAAACAGCTTCTGCAGGCAGTTTGAGGATAAGGTTGAGGCATGCAGAGGTACCCTTTGCTGCCACTTCTTGAAGGATTCCCACATGACTTCATATATGATCAGGGTCAGGCTTGGAGGCTGCACTGCTTATACTTCTGTTGTCGATATTCGACCTCAAGATCCAGTTGATAACTGGAACTATGGAATTGAGCTTCAATGGTTGCCTCCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

221

Amino Acids

24.81

Weight (kDa)

5.27

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	36 - 93	1.1e-11	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	500
AccB7I	CCANNNNNTGG	1 cut(s)	116
AclWI	GGATC	2 cut(s)	235, 605
AcuI	CTGAAG	3 cut(s)	191, 243, 312
AfaI	GTAC	2 cut(s)	236, 502
AfiI	CCNNNNNNNGG	2 cut(s)	78, 116
AflII	CTTAAG	1 cut(s)	349
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	4 cut(s)	376, 409, 523, 647
AhlI	ACTAGT	1 cut(s)	14
AluBI	AGCT	5 cut(s)	92, 221, 271, 459, 643
AluI	AGCT	5 cut(s)	92, 221, 271, 459, 643
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	235, 605
AlwNI	CAGNNNCTG	1 cut(s)	462
Ama87I	CYCGRG	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	510, 570
Asp718I	GGTACC	1 cut(s)	500
AsuHPI	GGTGA	2 cut(s)	61, 64
AvaI	CYCGRG	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	497, 557
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BclI	TGATCA	3 cut(s)	54, 66, 549
BcoDI	GTCTC	1 cut(s)	159
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	3 cut(s)	15, 125, 171
BfmI	CTRYAG	1 cut(s)	463
BfrI	CTTAAG	1 cut(s)	349
BisI	GCNGC	2 cut(s)	511, 571
BlsI	GCNGC	2 cut(s)	512, 572
BmeT110I	CYCGRG	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	502
BmsI	GCATC	2 cut(s)	258, 390
Bpu10I	CCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	591
BsaBI	GATNNNNATC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 116
Bse1I	ACTGG	2 cut(s)	614, 629
Bse3DI	GCAATG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	59
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	78, 116
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	2 cut(s)	614, 629
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	497, 557
BsgI	GTGCAG	1 cut(s)	556
BshNI	GGYRCC	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	78, 116
BsmAI	GTCTC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
BspCNI	CTCAG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	502
BspMAI	CTGCAG	1 cut(s)	467
BspPI	GGATC	2 cut(s)	235, 605
BspT107I	GGYRCC	1 cut(s)	500
BspTI	CTTAAG	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	614, 629
BssMI	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	343
BstAFI	CTTAAG	1 cut(s)	349
BstC8I	GCNNGC	3 cut(s)	106, 467, 493
BstDEI	CTNAG	2 cut(s)	245, 295
BstEII	GGTNACC	1 cut(s)	4
BstKTI	GATC	6 cut(s)	57, 69, 97, 243, 552, 613
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNSI	RCATGY	3 cut(s)	86, 321, 495
BstPI	GGTNACC	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	2 cut(s)	497, 557
BstX2I	RGATCY	2 cut(s)	240, 610
BstYI	RGATCY	2 cut(s)	240, 610
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	147, 573
Cac8I	GCNNGC	3 cut(s)	106, 467, 493
CaiI	CAGNNNCTG	1 cut(s)	462
CciI	TCATGA	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	235, 501
CviAII	CATG	6 cut(s)	64, 83, 214, 318, 492, 535
CviJI	RGCY	9 cut(s)	92, 123, 221, 271, 348, 459, 562, 570, 643
CviKI_1	RGCY	9 cut(s)	92, 123, 221, 271, 348, 459, 562, 570, 643
CviQI	GTAC	2 cut(s)	235, 501
DdeI	CTNAG	2 cut(s)	245, 295
DpnI	GATC	6 cut(s)	56, 68, 96, 242, 551, 612
DpnII	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	159
Eco57I	CTGAAG	3 cut(s)	191, 243, 312
Eco88I	CYCGRG	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
FaeI	CATG	6 cut(s)	67, 86, 217, 321, 495, 538
FatI	CATG	6 cut(s)	63, 82, 213, 317, 491, 534
FbaI	TGATCA	3 cut(s)	54, 66, 549
Fnu4HI	GCNGC	2 cut(s)	511, 571
Fsp4HI	GCNGC	2 cut(s)	511, 571
FspBI	CTAG	3 cut(s)	15, 125, 171
GluI	GCNGC	2 cut(s)	511, 571
Hin1II	CATG	6 cut(s)	67, 86, 217, 321, 495, 538
HinfI	GANTC	3 cut(s)	254, 354, 527
HphI	GGTGA	2 cut(s)	61, 64
Hpy188I	TCNGA	2 cut(s)	331, 418
Hpy188III	TCNNGA	3 cut(s)	64, 520, 608
HpyAV	CCTTC	3 cut(s)	218, 382, 517
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	4 cut(s)	189, 465, 495, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	2 cut(s)	245, 295
Hsp92II	CATG	6 cut(s)	67, 86, 217, 321, 495, 538
KpnI	GGTACC	1 cut(s)	504
Ksp22I	TGATCA	3 cut(s)	54, 66, 549
Kzo9I	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
LpnPI	CCDG	7 cut(s)	22, 300, 451, 538, 544, 610, 627
Lsp1109I	GCAGC	2 cut(s)	497, 557
LweI	GCATC	2 cut(s)	258, 390
MaeI	CTAG	3 cut(s)	15, 125, 171
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	6 cut(s)	56, 68, 96, 242, 551, 612
MboI	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
MboII	GAAGA	2 cut(s)	318, 330
MfeI	CAATTG	1 cut(s)	409
MflI	RGATCY	2 cut(s)	240, 610
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	33, 409, 442, 636
MlyI	GAGTC	2 cut(s)	248, 348
MseI	TTAA	2 cut(s)	231, 350
MslI	CAYNNNNRTG	3 cut(s)	62, 74, 398
MspA1I	CMGCKG	2 cut(s)	92, 221
MspCI	CTTAAG	1 cut(s)	349
MunI	CAATTG	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	195
NdeII	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
NlaIII	CATG	6 cut(s)	67, 86, 217, 321, 495, 538
NlaIV	GGNNCC	1 cut(s)	502
NspI	RCATGY	3 cut(s)	86, 321, 495
PaeI	GCATGC	1 cut(s)	495
PaeR7I	CTCGAG	1 cut(s)	256
PagI	TCATGA	1 cut(s)	63
PciI	ACATGT	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	512, 572
PleI	GAGTC	2 cut(s)	248, 348
PpsI	GAGTC	2 cut(s)	248, 348
PscI	ACATGT	1 cut(s)	317
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	502
PspXI	VCTCGAGB	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	462
PsuI	RGATCY	2 cut(s)	240, 610
PvuII	CAGCTG	2 cut(s)	92, 221
RsaI	GTAC	2 cut(s)	236, 502
RsaNI	GTAC	2 cut(s)	235, 501
RseI	CAYNNNNRTG	3 cut(s)	62, 74, 398
SaqAI	TTAA	2 cut(s)	231, 350
SatI	GCNGC	2 cut(s)	511, 571
Sau3AI	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
SchI	GAGTC	2 cut(s)	248, 348
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	9 cut(s)	94, 223, 273, 289, 461, 486, 502, 607, 645
SfaNI	GCATC	2 cut(s)	258, 390
SfcI	CTRYAG	1 cut(s)	463
Sfr274I	CTCGAG	1 cut(s)	256
SlaI	CTCGAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	3 cut(s)	62, 74, 398
SmlI	CTYRAG	3 cut(s)	256, 349, 606
SmoI	CTYRAG	3 cut(s)	256, 349, 606
SpeI	ACTAGT	1 cut(s)	14
SphI	GCATGC	1 cut(s)	495
Sse9I	AATT	4 cut(s)	33, 409, 442, 636
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	3 cut(s)	15, 125, 171
TaaI	ACNGT	1 cut(s)	397
TaqI	TCGA	7 cut(s)	27, 38, 252, 257, 357, 594, 601
TasI	AATT	4 cut(s)	33, 409, 442, 636
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	2 cut(s)	231, 350
Tru9I	TTAA	2 cut(s)	231, 350
TscAI	CASTG	2 cut(s)	154, 580
TseI	GCWGC	2 cut(s)	510, 570
TspDTI	ATGAA	4 cut(s)	202, 216, 375, 531
TspRI	CASTG	2 cut(s)	154, 580
Van91I	CCANNNNNTGG	1 cut(s)	116
Vha464I	CTTAAG	1 cut(s)	349
XceI	RCATGY	3 cut(s)	86, 321, 495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	621
XhoI	CTCGAG	1 cut(s)	256
XspI	CTAG	3 cut(s)	15, 125, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.