Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Reverse (-)

28490976 .. 28491626

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1196600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGTTTTGAAATCTTTTGTGTTCATGGTCGTCAGCCTCGCGATCACCATCAAAACATTCCATGTTTCAGCTCTTGATGCTTGCCCTAAATGTGGCAACATGGAAGTTCCATACCCTTTTAGCACAGACGACACGTGCGGGGACTCAAGTTACAAACTCTACTGCAACAACAATGGAGTTCTTGAGTTCCAGTCAGCTGAAGGCTTCGGCTACAAGGTCCTAAGCATTGACCTAGCTACTCAGAAGCTCATCATAAAACCACCTGATCTCGTACAGGATGACGACATGTGTCGCACTACTGATTTCTCTTCAGAAGGTCTGAGACTTGATGAAAACTTGCCCTTCAACGTGTCTACCCGGAACACCGTCATACTGCTCAACTGCTCCGACAATCTTCTCCGATCGCCTCTCAACTGTTCCTCAAACAGCCTCTGTAGGGTTTTTGAGGATAAAATGTTGGAGGGGAGGAATAATGCATGCAAAAGCAGGCTGTGCTGCCATTACTTGAAAGACTCGCACATGACGTCGTATATGATTAGGGTTAGGGTTGGAGGGTGCACTGCTTATACTTGTGTGGTCGATATTCAACCCCAAGATCCTGCTGATAAATGGAACTATGGCATTGAGCTGCAGTGGATGCCTCCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

217

Amino Acids

24.28

Weight (kDa)

5.18

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	28 - 85	1.9e-12	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	353
AccII	CGCG	1 cut(s)	41
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	590
AcuI	CTGAAG	2 cut(s)	219, 294
AcvI	CACGTG	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	524
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	92, 436
AflIII	ACRYGT	3 cut(s)	132, 285, 348
AgsI	TTSAA	4 cut(s)	10, 346, 508, 587
AluBI	AGCT	5 cut(s)	71, 197, 236, 247, 628
AluI	AGCT	5 cut(s)	71, 197, 236, 247, 628
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	1 cut(s)	316
Alw44I	GTGCAC	1 cut(s)	556
AlwI	GGATC	1 cut(s)	590
AlwNI	CAGNNNCTG	1 cut(s)	432
ApaLI	GTGCAC	1 cut(s)	556
ApeKI	GCWGC	2 cut(s)	495, 628
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	560
BbrPI	CACGTG	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	2 cut(s)	482, 615
BccI	CCATC	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	2 cut(s)	433, 629
BisI	GCNGC	2 cut(s)	496, 629
BlsI	GCNGC	2 cut(s)	497, 630
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	2 cut(s)	67, 627
BoxI	GACNNNNGTC	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	2 cut(s)	130, 203
BpuMI	CCSGG	1 cut(s)	358
BsaAI	YACGTR	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 436
Bse1I	ACTGG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	47
BseGI	GGATG	2 cut(s)	283, 642
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	92, 436
BseMII	CTCAG	2 cut(s)	254, 311
BseNI	ACTGG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	482, 615
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	92, 436
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	4 cut(s)	42, 265, 401, 595
Bsp68I	TCGCGA	1 cut(s)	41
BspACI	CCGC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	253, 312
BspFNI	CGCG	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	633
BspPI	GGATC	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	4 cut(s)	42, 265, 401, 595
BssNI	GRCGYC	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	367, 416
Bst6I	CTCTTC	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	524
BstAPI	GCANNNNNTGC	2 cut(s)	492, 637
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	82, 478, 488
BstDEI	CTNAG	3 cut(s)	221, 240, 320
BstF5I	GGATG	2 cut(s)	283, 642
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	4 cut(s)	45, 268, 404, 598
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	4 cut(s)	42, 265, 401, 595
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 492, 637
BstNSI	RCATGY	2 cut(s)	289, 480
BstPAI	GACNNNNGTC	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	2 cut(s)	433, 629
BstSLI	GKGCMC	1 cut(s)	560
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	482, 615
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BtsCI	GGATG	2 cut(s)	283, 642
BtsI	GCAGTG	2 cut(s)	558, 638
BtsIMutI	CAGTG	2 cut(s)	558, 638
BtuMI	TCGCGA	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	82, 478, 488
CaiI	CAGNNNCTG	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	6 cut(s)	25, 62, 100, 286, 477, 520
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	3 cut(s)	221, 240, 320
DpnI	GATC	4 cut(s)	44, 267, 403, 597
DpnII	GATC	4 cut(s)	42, 265, 401, 595
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	219, 294
Eco72I	CACGTG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	478
FaeI	CATG	6 cut(s)	28, 65, 103, 289, 480, 523
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	6 cut(s)	24, 61, 99, 285, 476, 519
FauI	CCCGC	1 cut(s)	131
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	2 cut(s)	496, 629
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	496, 629
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	2 cut(s)	496, 629
HapII	CCGG	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	524
Hin1II	CATG	6 cut(s)	28, 65, 103, 289, 480, 523
HinfI	GANTC	2 cut(s)	143, 512
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	2 cut(s)	354, 558
Hpy188I	TCNGA	5 cut(s)	243, 313, 321, 388, 401
Hpy188III	TCNNGA	3 cut(s)	40, 74, 182
Hpy8I	GTNNAC	2 cut(s)	354, 558
Hpy99I	CGWCG	1 cut(s)	529
HpyAV	CCTTC	3 cut(s)	194, 308, 352
HpyCH4III	ACNGT	2 cut(s)	367, 416
HpyCH4IV	ACGT	3 cut(s)	134, 348, 524
HpyCH4V	TGCA	5 cut(s)	165, 476, 480, 558, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 492, 637
HpyF3I	CTNAG	3 cut(s)	221, 240, 320
HpySE526I	ACGT	3 cut(s)	134, 348, 524
Hsp92I	GRCGYC	1 cut(s)	524
Hsp92II	CATG	6 cut(s)	28, 65, 103, 289, 480, 523
Kzo9I	GATC	4 cut(s)	42, 265, 401, 595
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	6 cut(s)	203, 260, 276, 371, 472, 612
Lsp1109I	GCAGC	2 cut(s)	482, 615
LweI	GCATC	2 cut(s)	67, 627
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	3 cut(s)	134, 348, 524
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	4 cut(s)	44, 267, 403, 597
MboI	GATC	4 cut(s)	42, 265, 401, 595
MboII	GAAGA	2 cut(s)	300, 386
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	1 cut(s)	560
MlyI	GAGTC	2 cut(s)	137, 506
MmeI	TCCRAC	3 cut(s)	411, 438, 529
MnlI	CCTC	9 cut(s)	47, 417, 430, 439, 440, 454, 459, 545, 651
Mph1103I	ATGCAT	1 cut(s)	478
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	77, 492, 637
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	4 cut(s)	42, 265, 401, 595
NlaIII	CATG	6 cut(s)	28, 65, 103, 289, 480, 523
NruI	TCGCGA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	2 cut(s)	289, 480
PaeI	GCATGC	1 cut(s)	480
PciI	ACATGT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	521
PkrI	GCNGC	2 cut(s)	497, 630
Ple19I	CGATCG	1 cut(s)	404
PleI	GAGTC	2 cut(s)	137, 506
PmaCI	CACGTG	1 cut(s)	135
PmlI	CACGTG	1 cut(s)	135
PpsI	GAGTC	2 cut(s)	137, 506
Ppu21I	YACGTR	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	217
PscI	ACATGT	1 cut(s)	285
PshAI	GACNNNNGTC	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	217
PspCI	CACGTG	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	217
PspPPI	RGGWCCY	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	633
PstNI	CAGNNNCTG	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	595
PvuI	CGATCG	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	197
RruI	TCGCGA	1 cut(s)	41
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SatI	GCNGC	2 cut(s)	496, 629
Sau3AI	GATC	4 cut(s)	42, 265, 401, 595
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	137, 506
ScrFI	CCNGG	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	560
SfaNI	GCATC	2 cut(s)	67, 627
SfcI	CTRYAG	2 cut(s)	433, 629
SinI	GGWCC	1 cut(s)	217
SmlI	CTYRAG	2 cut(s)	145, 182
SmoI	CTYRAG	2 cut(s)	145, 182
SphI	GCATGC	1 cut(s)	480
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	356
TaaI	ACNGT	2 cut(s)	367, 416
TaiI	ACGT	3 cut(s)	137, 351, 527
TaqI	TCGA	1 cut(s)	579
TscAI	CASTG	2 cut(s)	565, 638
TseI	GCWGC	2 cut(s)	495, 628
TspDTI	ATGAA	2 cut(s)	13, 345
TspRI	CASTG	2 cut(s)	565, 638
VneI	GTGCAC	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	217
XceI	RCATGY	2 cut(s)	289, 480
XmiI	GTMKAC	1 cut(s)	353
XspI	CTAG	1 cut(s)	233
ZraI	GACGTC	1 cut(s)	525
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.