Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002607.1

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Reverse (-)

1019 .. 1609

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002607.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggggcatgtatcagctgatcttggtgcttgcccaaaatgtggtagcctagaagttccatacccttttagcactgatgatagttgtggagaccctagatacaaaatctattgcaacaatggcaatgaacttcaattcatgtcagctgaagggtttaagtacaagatcctcagcatcgactcgagtgccaacaggctcattatacacccacctgatttcttagtagagaataacacttctacatgttattcttcagatttctcttcacaaggcttaagactcgatgaacacttgcccttcaacatttctactcgtaacaccgtgatgctgttcaattgctcggataatattctcctctcgcctctaaattgttcctcaaacagcttctgcaggcagtttgaggataagattgaggcatgcagaggtaccctttgctgccacttcttgaaggattcccacatgacttcatacatgatcagggtcaggcttggaggctgcactgcttatacttctgttgtcgatattcgacctcaagatccagttgataactggtactatggaattgagcttcaatggttgcctcctaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

196

Amino Acids

22.09

Weight (kDa)

5.11

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	41
AclWI	GGATC	2 cut(s)	160, 530
AcuI	CTGAAG	2 cut(s)	168, 237
AfaI	GTAC	3 cut(s)	161, 427, 554
AfiI	CCNNNNNNNGG	1 cut(s)	41
AflII	CTTAAG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	5 cut(s)	134, 301, 334, 448, 572
AluBI	AGCT	4 cut(s)	17, 146, 384, 568
AluI	AGCT	4 cut(s)	17, 146, 384, 568
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	160, 530
AlwNI	CAGNNNCTG	1 cut(s)	387
Ama87I	CYCGRG	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	435, 495
Asp718I	GGTACC	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	425
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	422, 482
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BclI	TGATCA	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	2 cut(s)	50, 96
BfmI	CTRYAG	1 cut(s)	388
BfrI	CTTAAG	1 cut(s)	274
BisI	GCNGC	2 cut(s)	436, 496
BlsI	GCNGC	2 cut(s)	437, 497
BmeT110I	CYCGRG	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	427
BmsI	GCATC	2 cut(s)	183, 315
Bpu10I	CCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	539, 554
Bse3DI	GCAATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	2 cut(s)	539, 554
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	422, 482
BsgI	GTGCAG	1 cut(s)	481
BshNI	GGYRCC	1 cut(s)	425
BsiHKCI	CYCGRG	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	181
Bsp143I	GATC	4 cut(s)	19, 165, 474, 535
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	392
BspPI	GGATC	2 cut(s)	160, 530
BspT107I	GGYRCC	1 cut(s)	425
BspTI	CTTAAG	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	539, 554
BssMI	GATC	4 cut(s)	19, 165, 474, 535
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	268
BstAFI	CTTAAG	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	31, 392, 418
BstDEI	CTNAG	2 cut(s)	170, 220
BstKTI	GATC	4 cut(s)	22, 168, 477, 538
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	4 cut(s)	19, 165, 474, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNSI	RCATGY	3 cut(s)	11, 246, 420
BstSFI	CTRYAG	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	422, 482
BstX2I	RGATCY	2 cut(s)	165, 535
BstYI	RGATCY	2 cut(s)	165, 535
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	72, 498
Cac8I	GCNNGC	3 cut(s)	31, 392, 418
CaiI	CAGNNNCTG	1 cut(s)	387
Csp6I	GTAC	3 cut(s)	160, 426, 553
CviAII	CATG	6 cut(s)	8, 139, 243, 417, 460, 472
CviJI	RGCY	9 cut(s)	17, 48, 146, 196, 273, 384, 487, 495, 568
CviKI_1	RGCY	9 cut(s)	17, 48, 146, 196, 273, 384, 487, 495, 568
CviQI	GTAC	3 cut(s)	160, 426, 553
DdeI	CTNAG	2 cut(s)	170, 220
DpnI	GATC	4 cut(s)	21, 167, 476, 537
DpnII	GATC	4 cut(s)	19, 165, 474, 535
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	84
Eco57I	CTGAAG	2 cut(s)	168, 237
Eco88I	CYCGRG	1 cut(s)	181
FaeI	CATG	6 cut(s)	11, 142, 246, 420, 463, 475
FatI	CATG	6 cut(s)	7, 138, 242, 416, 459, 471
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	436, 496
Fsp4HI	GCNGC	2 cut(s)	436, 496
FspBI	CTAG	2 cut(s)	50, 96
GluI	GCNGC	2 cut(s)	436, 496
Hin1II	CATG	6 cut(s)	11, 142, 246, 420, 463, 475
HinfI	GANTC	3 cut(s)	179, 279, 452
Hpy188I	TCNGA	2 cut(s)	256, 343
Hpy188III	TCNNGA	2 cut(s)	445, 533
HpyAV	CCTTC	3 cut(s)	143, 307, 442
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	4 cut(s)	114, 390, 420, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	2 cut(s)	170, 220
Hsp92II	CATG	6 cut(s)	11, 142, 246, 420, 463, 475
KpnI	GGTACC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	4 cut(s)	19, 165, 474, 535
LpnPI	CCDG	7 cut(s)	178, 225, 376, 463, 469, 535, 552
Lsp1109I	GCAGC	2 cut(s)	422, 482
LweI	GCATC	2 cut(s)	183, 315
MaeI	CTAG	2 cut(s)	50, 96
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	4 cut(s)	21, 167, 476, 537
MboI	GATC	4 cut(s)	19, 165, 474, 535
MboII	GAAGA	2 cut(s)	243, 255
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	2 cut(s)	165, 535
MluCI	AATT	4 cut(s)	134, 334, 367, 561
MlyI	GAGTC	2 cut(s)	173, 273
MseI	TTAA	2 cut(s)	156, 275
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	2 cut(s)	17, 146
MspCI	CTTAAG	1 cut(s)	274
MunI	CAATTG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	120
NdeII	GATC	4 cut(s)	19, 165, 474, 535
NlaIII	CATG	6 cut(s)	11, 142, 246, 420, 463, 475
NlaIV	GGNNCC	1 cut(s)	427
NspI	RCATGY	3 cut(s)	11, 246, 420
PaeI	GCATGC	1 cut(s)	420
PaeR7I	CTCGAG	1 cut(s)	181
PciI	ACATGT	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	452
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	437, 497
PleI	GAGTC	2 cut(s)	173, 273
PpsI	GAGTC	2 cut(s)	173, 273
PscI	ACATGT	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	427
PspXI	VCTCGAGB	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	392
PstNI	CAGNNNCTG	1 cut(s)	387
PsuI	RGATCY	2 cut(s)	165, 535
PvuII	CAGCTG	2 cut(s)	17, 146
RsaI	GTAC	3 cut(s)	161, 427, 554
RsaNI	GTAC	3 cut(s)	160, 426, 553
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	156, 275
SatI	GCNGC	2 cut(s)	436, 496
Sau3AI	GATC	4 cut(s)	19, 165, 474, 535
SchI	GAGTC	2 cut(s)	173, 273
SetI	ASST	7 cut(s)	19, 148, 214, 386, 427, 532, 570
SfaNI	GCATC	2 cut(s)	183, 315
SfcI	CTRYAG	1 cut(s)	388
Sfr274I	CTCGAG	1 cut(s)	181
SlaI	CTCGAG	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	3 cut(s)	181, 274, 531
SmoI	CTYRAG	3 cut(s)	181, 274, 531
SphI	GCATGC	1 cut(s)	420
Sse9I	AATT	4 cut(s)	134, 334, 367, 561
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	2 cut(s)	50, 96
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	5 cut(s)	177, 182, 282, 519, 526
TasI	AATT	4 cut(s)	134, 334, 367, 561
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	2 cut(s)	156, 275
Tru9I	TTAA	2 cut(s)	156, 275
TscAI	CASTG	2 cut(s)	79, 505
TseI	GCWGC	2 cut(s)	435, 495
TspDTI	ATGAA	4 cut(s)	127, 141, 300, 456
TspRI	CASTG	2 cut(s)	79, 505
Van91I	CCANNNNNTGG	1 cut(s)	41
Vha464I	CTTAAG	1 cut(s)	274
XceI	RCATGY	3 cut(s)	11, 246, 420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	546
XhoI	CTCGAG	1 cut(s)	181
XspI	CTAG	2 cut(s)	50, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.