Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Forward (+)

4239070 .. 4239708

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCTCTTTGTGGTGATCATGATCATGTTCACCAAAATTGGGGATGTATCAGCTGATGCTGGTGCTTGCCCAAAATGTGGTAGCCTAGAAGTTCCATACCCTTTTAGCACTGATGCTAGTTGTGGAGACCCAAGATACAAAATCTACTGCAACAATGCCAATGAACTTCAGTTCATGTCAGCTAAAGGGTTTAAATACAAGATCCTCAGCTTCGACTTGAGTGTCAACAAGCTCATTATACTCCCACCTGATTTGTTAGTATTGAATGATAACACTCCCACATGTTATTCTTCAGATTTCTCATCACAAGGCTTAACACTCGATGAGCAATTGCCCTTCAACATTTCTACTCGTAACACTGTGATGCTGTTCAATTGCTCGGATAATCTTCTTCGCTCGCCTCTAAATTGTTCCTCAAGCAGCTTTTGTAGGCAGTTTGAGGATAAGATAGAGGCATGCAGAGGTACCCTTTGCTGCCATTTCTTGAAGGATTCTCGCATGACTTCATATATGATCAGGGTCAGGCTTGGAGGCTGCACTGCTTATACTTCCGTTGTCGATATTCAACCTGATGATCCTGTTGATAACTGGAACTATGGCATTGAGCTTCAATGGTTGCCTGACTTGCCTCCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

213

Amino Acids

23.76

Weight (kDa)

4.73

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	23 - 78	4.7e-10	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc65I	GGTACC	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	464
AccB7I	CCANNNNNTGG	1 cut(s)	77
AclWI	GGATC	2 cut(s)	196, 569
AcuI	CTGAAG	2 cut(s)	152, 276
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	39, 77
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	6 cut(s)	265, 340, 373, 487, 566, 611
AluBI	AGCT	6 cut(s)	53, 182, 210, 232, 423, 607
AluI	AGCT	6 cut(s)	53, 182, 210, 232, 423, 607
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	196, 569
ApeKI	GCWGC	3 cut(s)	420, 474, 534
Asp718I	GGTACC	1 cut(s)	464
AsuHPI	GGTGA	2 cut(s)	22, 25
BanI	GGYRCC	1 cut(s)	464
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	432, 461, 521
BclI	TGATCA	3 cut(s)	15, 21, 513
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	86, 117
BisI	GCNGC	3 cut(s)	421, 475, 535
BlsI	GCNGC	3 cut(s)	422, 476, 536
BmiI	GGNNCC	1 cut(s)	466
BmsI	GCATC	3 cut(s)	46, 103, 354
Bpu10I	CCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	2 cut(s)	238, 400
BsaBI	GATNNNNATC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 77
Bse1I	ACTGG	1 cut(s)	593
Bse8I	GATNNNNATC	1 cut(s)	20
BseGI	GGATG	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	39, 77
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	593
BseXI	GCAGC	3 cut(s)	432, 461, 521
BsgI	GTGCAG	1 cut(s)	520
BshNI	GGYRCC	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	39, 77
BsmAI	GTCTC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	120
Bsp143I	GATC	5 cut(s)	15, 21, 201, 513, 574
BspCNI	CTCAG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	466
BspPI	GGATC	2 cut(s)	196, 569
BspT107I	GGYRCC	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	593
BssMI	GATC	5 cut(s)	15, 21, 201, 513, 574
Bst4CI	ACNGT	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	67, 398, 457
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	5 cut(s)	18, 24, 204, 516, 577
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	5 cut(s)	15, 21, 201, 513, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstNSI	RCATGY	2 cut(s)	285, 459
BstV1I	GCAGC	3 cut(s)	432, 461, 521
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	3 cut(s)	108, 357, 537
Cac8I	GCNNGC	3 cut(s)	67, 398, 457
CciI	TCATGA	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	465
CspCI	CAANNNNNGTGG	2 cut(s)	234, 269
CviAII	CATG	6 cut(s)	19, 25, 175, 282, 456, 499
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	5 cut(s)	17, 23, 203, 515, 576
DpnII	GATC	5 cut(s)	15, 21, 201, 513, 574
DraI	TTTAAA	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	120
Eco57I	CTGAAG	2 cut(s)	152, 276
FaeI	CATG	6 cut(s)	22, 28, 178, 285, 459, 502
FatI	CATG	6 cut(s)	18, 24, 174, 281, 455, 498
FbaI	TGATCA	3 cut(s)	15, 21, 513
Fnu4HI	GCNGC	3 cut(s)	421, 475, 535
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	3 cut(s)	421, 475, 535
FspBI	CTAG	2 cut(s)	86, 117
GluI	GCNGC	3 cut(s)	421, 475, 535
Hin1II	CATG	6 cut(s)	22, 28, 178, 285, 459, 502
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	491
HphI	GGTGA	2 cut(s)	22, 25
Hpy166II	GTNNAC	2 cut(s)	30, 226
Hpy188I	TCNGA	2 cut(s)	295, 382
Hpy188III	TCNNGA	2 cut(s)	19, 484
Hpy8I	GTNNAC	2 cut(s)	30, 226
HpyAV	CCTTC	2 cut(s)	346, 481
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	3 cut(s)	150, 459, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	6 cut(s)	22, 28, 178, 285, 459, 502
KpnI	GGTACC	1 cut(s)	468
Ksp22I	TGATCA	3 cut(s)	15, 21, 513
Kzo9I	GATC	5 cut(s)	15, 21, 201, 513, 574
LpnPI	CCDG	8 cut(s)	45, 261, 502, 508, 574, 582, 591, 633
Lsp1109I	GCAGC	3 cut(s)	432, 461, 521
LweI	GCATC	3 cut(s)	46, 103, 354
MaeI	CTAG	2 cut(s)	86, 117
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	5 cut(s)	17, 23, 203, 515, 576
MboI	GATC	5 cut(s)	15, 21, 201, 513, 574
MboII	GAAGA	3 cut(s)	282, 380, 383
MfeI	CAATTG	2 cut(s)	329, 373
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	4 cut(s)	36, 329, 373, 406
MnlI	CCTC	8 cut(s)	215, 411, 424, 433, 445, 455, 524, 639
MseI	TTAA	2 cut(s)	192, 314
MslI	CAYNNNNRTG	2 cut(s)	23, 362
MspA1I	CMGCKG	1 cut(s)	53
MunI	CAATTG	2 cut(s)	329, 373
MwoI	GCNNNNNNNGC	1 cut(s)	625
NdeII	GATC	5 cut(s)	15, 21, 201, 513, 574
NlaIII	CATG	6 cut(s)	22, 28, 178, 285, 459, 502
NlaIV	GGNNCC	1 cut(s)	466
NspI	RCATGY	2 cut(s)	285, 459
PaeI	GCATGC	1 cut(s)	459
PagI	TCATGA	1 cut(s)	18
PciI	ACATGT	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	491
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	422, 476, 536
PscI	ACATGT	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
RseI	CAYNNNNRTG	2 cut(s)	23, 362
SaqAI	TTAA	2 cut(s)	192, 314
SatI	GCNGC	3 cut(s)	421, 475, 535
Sau3AI	GATC	5 cut(s)	15, 21, 201, 513, 574
SetI	ASST	9 cut(s)	55, 184, 212, 234, 250, 425, 466, 571, 609
SfaNI	GCATC	3 cut(s)	46, 103, 354
SmiMI	CAYNNNNRTG	2 cut(s)	23, 362
SmlI	CTYRAG	2 cut(s)	217, 415
SmoI	CTYRAG	2 cut(s)	217, 415
SphI	GCATGC	1 cut(s)	459
Sse9I	AATT	4 cut(s)	36, 329, 373, 406
SspMI	CTAG	2 cut(s)	86, 117
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	3 cut(s)	213, 321, 558
TasI	AATT	4 cut(s)	36, 329, 373, 406
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	2 cut(s)	192, 314
Tru9I	TTAA	2 cut(s)	192, 314
TscAI	CASTG	3 cut(s)	115, 364, 544
TseI	GCWGC	3 cut(s)	420, 474, 534
TspDTI	ATGAA	3 cut(s)	163, 177, 495
TspGWI	ACGGA	1 cut(s)	541
TspRI	CASTG	3 cut(s)	115, 364, 544
Van91I	CCANNNNNTGG	1 cut(s)	77
XceI	RCATGY	2 cut(s)	285, 459
XspI	CTAG	2 cut(s)	86, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.