Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Forward (+)

6085175 .. 6086022

Gene Structure 848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG078400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATATACAGATCAATAGAGCCATCATCACTTCCAGCAAATCTGTCTCTACTTTTTTTCACAGCTTTCTTGCCTACTCTGGGTTTAACTATGGTAACCAGCACTAGTAGAGTACTCGAAATAATTTCGATGTTATTTGTGGTGATCATGATCATGATCACCATAATCGGGCATGTATCGGCTGATTTTGGTGCTTGCCCAAAATGTGGTAGCCTAGAAGTTCCATACCCTTTTAGCACTGATGATAGCTGTGGAGACCCTAGATATAAAATCTACTGCAACAATGGCAACGAACTTCAGTTCATGTCAGCTGAAGGGTTTAAGTACAAGATCCTCAGCATCGACTCGAGTGCCAACAAGCTCATTATACACCCACCTGATTTCTTAGTAGAGAATAACACTCCTACATGTTATTCTTCAGATTTCTCTTCACAAGGCTTAAGACTCGATGAACACTTGCCCTTCAACATTTCTACTCATAACACCGTGATGCTGTTCAATTGCTCGGATAATATTCTCCTCTCGCCTCTAAATTGTTCCTCAAACAGCTTCTGCAGGCAGTTTGAGGATAAGATTGAGGCATGCAGAGGTACCCTTTGCTGCCACTTCTTGAAGGATTCCCACATGACTTCATATATGATCAGGGTCAGGCTTGGAGGCTGCACTGCTTATACTTCTGTTGTCGATATTCGACCTCAAGATCCAGTTGATAACTGGAACTATGGAATTGAGCTTCAATGGTTGCCTCCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

251

Amino Acids

28.14

Weight (kDa)

5.14

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	66 - 123	1.4e-11	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	590
AccB1I	GGYRCC	1 cut(s)	590
AccB7I	CCANNNNNTGG	1 cut(s)	206
AclWI	GGATC	2 cut(s)	325, 695
AcuI	CTGAAG	3 cut(s)	281, 333, 402
AfaI	GTAC	3 cut(s)	114, 326, 592
AfiI	CCNNNNNNNGG	3 cut(s)	80, 168, 206
AflII	CTTAAG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	4 cut(s)	466, 499, 613, 737
AhlI	ACTAGT	1 cut(s)	104
AluBI	AGCT	6 cut(s)	65, 249, 311, 361, 549, 733
AluI	AGCT	6 cut(s)	65, 249, 311, 361, 549, 733
Alw26I	GTCTC	2 cut(s)	51, 249
AlwI	GGATC	2 cut(s)	325, 695
AlwNI	CAGNNNCTG	1 cut(s)	552
Ama87I	CYCGRG	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	600, 660
Asp718I	GGTACC	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	151, 154
AvaI	CYCGRG	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	590
BbvCI	CCTCAGC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	587, 647
BccI	CCATC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BclI	TGATCA	4 cut(s)	144, 150, 156, 639
BcoDI	GTCTC	2 cut(s)	51, 249
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	3 cut(s)	105, 215, 261
BfmI	CTRYAG	1 cut(s)	553
BfrI	CTTAAG	1 cut(s)	439
BisI	GCNGC	2 cut(s)	601, 661
BlsI	GCNGC	2 cut(s)	602, 662
BmcAI	AGTACT	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	592
BmsI	GCATC	2 cut(s)	348, 480
Bpu10I	CCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	681
BsaBI	GATNNNNATC	2 cut(s)	149, 155
BsaI	GGTCTC	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 168, 206
Bse1I	ACTGG	2 cut(s)	704, 719
Bse8I	GATNNNNATC	2 cut(s)	149, 155
BseJI	GATNNNNATC	2 cut(s)	149, 155
BseLI	CCNNNNNNNGG	3 cut(s)	80, 168, 206
BseMII	CTCAG	1 cut(s)	349
BseNI	ACTGG	2 cut(s)	704, 719
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	2 cut(s)	587, 647
BsgI	GTGCAG	1 cut(s)	646
BshNI	GGYRCC	1 cut(s)	590
BsiHKCI	CYCGRG	1 cut(s)	346
BslI	CCNNNNNNNGG	3 cut(s)	80, 168, 206
BsmAI	GTCTC	2 cut(s)	51, 249
Bso31I	GGTCTC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	346
Bsp143I	GATC	7 cut(s)	11, 144, 150, 156, 330, 639, 700
BspCNI	CTCAG	1 cut(s)	348
BspHI	TCATGA	2 cut(s)	147, 153
BspLI	GGNNCC	1 cut(s)	592
BspMAI	CTGCAG	1 cut(s)	557
BspPI	GGATC	2 cut(s)	325, 695
BspT107I	GGYRCC	1 cut(s)	590
BspTI	CTTAAG	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	704, 719
BssMI	GATC	7 cut(s)	11, 144, 150, 156, 330, 639, 700
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	1 cut(s)	433
BstAFI	CTTAAG	1 cut(s)	439
BstC8I	GCNNGC	3 cut(s)	196, 557, 583
BstDEI	CTNAG	2 cut(s)	335, 385
BstEII	GGTNACC	1 cut(s)	94
BstKTI	GATC	7 cut(s)	14, 147, 153, 159, 333, 642, 703
BstMAI	GTCTC	2 cut(s)	51, 249
BstMBI	GATC	7 cut(s)	11, 144, 150, 156, 330, 639, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNSI	RCATGY	3 cut(s)	176, 411, 585
BstPI	GGTNACC	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	553
BstV1I	GCAGC	2 cut(s)	587, 647
BstX2I	RGATCY	2 cut(s)	330, 700
BstYI	RGATCY	2 cut(s)	330, 700
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	237, 663
Cac8I	GCNNGC	3 cut(s)	196, 557, 583
CaiI	CAGNNNCTG	1 cut(s)	552
CciI	TCATGA	2 cut(s)	147, 153
Csp6I	GTAC	3 cut(s)	113, 325, 591
CviAII	CATG	7 cut(s)	148, 154, 173, 304, 408, 582, 625
CviQI	GTAC	3 cut(s)	113, 325, 591
DdeI	CTNAG	2 cut(s)	335, 385
DpnI	GATC	7 cut(s)	13, 146, 152, 158, 332, 641, 702
DpnII	GATC	7 cut(s)	11, 144, 150, 156, 330, 639, 700
Eam1104I	CTCTTC	1 cut(s)	433
EarI	CTCTTC	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	249
Eco57I	CTGAAG	3 cut(s)	281, 333, 402
Eco88I	CYCGRG	1 cut(s)	346
Eco91I	GGTNACC	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	94
FaeI	CATG	7 cut(s)	151, 157, 176, 307, 411, 585, 628
FatI	CATG	7 cut(s)	147, 153, 172, 303, 407, 581, 624
FbaI	TGATCA	4 cut(s)	144, 150, 156, 639
Fnu4HI	GCNGC	2 cut(s)	601, 661
Fsp4HI	GCNGC	2 cut(s)	601, 661
FspBI	CTAG	3 cut(s)	105, 215, 261
GluI	GCNGC	2 cut(s)	601, 661
Hin1II	CATG	7 cut(s)	151, 157, 176, 307, 411, 585, 628
HinfI	GANTC	3 cut(s)	344, 444, 617
HphI	GGTGA	2 cut(s)	151, 154
Hpy188I	TCNGA	2 cut(s)	421, 508
Hpy188III	TCNNGA	4 cut(s)	148, 154, 610, 698
HpyAV	CCTTC	3 cut(s)	308, 472, 607
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4V	TGCA	4 cut(s)	279, 555, 585, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	2 cut(s)	335, 385
Hsp92II	CATG	7 cut(s)	151, 157, 176, 307, 411, 585, 628
KpnI	GGTACC	1 cut(s)	594
Ksp22I	TGATCA	4 cut(s)	144, 150, 156, 639
Kzo9I	GATC	7 cut(s)	11, 144, 150, 156, 330, 639, 700
LpnPI	CCDG	9 cut(s)	48, 65, 112, 390, 541, 628, 634, 700, 717
Lsp1109I	GCAGC	2 cut(s)	587, 647
LweI	GCATC	2 cut(s)	348, 480
MaeI	CTAG	3 cut(s)	105, 215, 261
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	7 cut(s)	13, 146, 152, 158, 332, 641, 702
MboI	GATC	7 cut(s)	11, 144, 150, 156, 330, 639, 700
MboII	GAAGA	2 cut(s)	408, 420
MfeI	CAATTG	1 cut(s)	499
MflI	RGATCY	2 cut(s)	330, 700
MluCI	AATT	4 cut(s)	123, 499, 532, 726
MlyI	GAGTC	2 cut(s)	338, 438
MseI	TTAA	3 cut(s)	86, 321, 440
MslI	CAYNNNNRTG	2 cut(s)	152, 488
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	439
MunI	CAATTG	1 cut(s)	499
MwoI	GCNNNNNNNGC	1 cut(s)	285
NdeII	GATC	7 cut(s)	11, 144, 150, 156, 330, 639, 700
NlaIII	CATG	7 cut(s)	151, 157, 176, 307, 411, 585, 628
NlaIV	GGNNCC	1 cut(s)	592
NspI	RCATGY	3 cut(s)	176, 411, 585
PaeI	GCATGC	1 cut(s)	585
PaeR7I	CTCGAG	1 cut(s)	346
PagI	TCATGA	2 cut(s)	147, 153
PciI	ACATGT	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	617
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	602, 662
PleI	GAGTC	2 cut(s)	338, 438
PpsI	GAGTC	2 cut(s)	338, 438
PscI	ACATGT	1 cut(s)	407
PspEI	GGTNACC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	592
PspXI	VCTCGAGB	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	557
PstNI	CAGNNNCTG	1 cut(s)	552
PsuI	RGATCY	2 cut(s)	330, 700
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	3 cut(s)	114, 326, 592
RsaNI	GTAC	3 cut(s)	113, 325, 591
RseI	CAYNNNNRTG	2 cut(s)	152, 488
SaqAI	TTAA	3 cut(s)	86, 321, 440
SatI	GCNGC	2 cut(s)	601, 661
Sau3AI	GATC	7 cut(s)	11, 144, 150, 156, 330, 639, 700
ScaI	AGTACT	1 cut(s)	114
SchI	GAGTC	2 cut(s)	338, 438
SetI	ASST	9 cut(s)	67, 251, 313, 363, 379, 551, 592, 697, 735
SfaNI	GCATC	2 cut(s)	348, 480
SfcI	CTRYAG	1 cut(s)	553
Sfr274I	CTCGAG	1 cut(s)	346
SlaI	CTCGAG	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	152, 488
SmlI	CTYRAG	3 cut(s)	346, 439, 696
SmoI	CTYRAG	3 cut(s)	346, 439, 696
SpeI	ACTAGT	1 cut(s)	104
SphI	GCATGC	1 cut(s)	585
Sse9I	AATT	4 cut(s)	123, 499, 532, 726
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	3 cut(s)	105, 215, 261
TaaI	ACNGT	1 cut(s)	487
TaqI	TCGA	7 cut(s)	117, 128, 342, 347, 447, 684, 691
TasI	AATT	4 cut(s)	123, 499, 532, 726
TatI	WGTACW	2 cut(s)	112, 324
TfiI	GAWTC	1 cut(s)	617
Tru1I	TTAA	3 cut(s)	86, 321, 440
Tru9I	TTAA	3 cut(s)	86, 321, 440
TscAI	CASTG	2 cut(s)	244, 670
TseI	GCWGC	2 cut(s)	600, 660
TspDTI	ATGAA	3 cut(s)	292, 465, 621
TspRI	CASTG	2 cut(s)	244, 670
Van91I	CCANNNNNTGG	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	439
XceI	RCATGY	3 cut(s)	176, 411, 585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	711
XhoI	CTCGAG	1 cut(s)	346
XspI	CTAG	3 cut(s)	105, 215, 261
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.