Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Forward (+)

6053101 .. 6053736

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTATTTGTGGTCATCATGATTATGATCGTGATCACCAAAATTGGGCATGCATCAGCTGATCTTGGTGCCTGCCCAAAATGTGGTAGCCTAGAAGTTCCATACCCTTTTAGCACTGATGATATCTGTGGAGACCCTAGATATAAAATCTACTGCAACAATGGCAATGAACTTCAGTTCATGTCAGCGGAAGGGTTTAAGTACAAGATCCTCAGCATCGACTTGAGTGCCAACAAGCTCATTATACAGCCACCTGATCTGTTAGTGGTGGATGATACCACTACTACATGTTATTCTTCAGATTTCTCTTCACAAGGCTTAAGACTCGATGAGCGCTTGCCCTTCAACATTTCTACTCGTAACACCGTGATGCTGTTCAATTGCTCGGATAATATTCTCCGCTCGCCTCTAAATTGTTCCTCAAACAGCTTCTGCAGGCAGTTTGAGGATAAGGTTGAGGCGTGTAGAGGTACCCTTTGCTGCCATTTCTTGAAGGATTCGCACATGACTTCATATATGATCAGGGTCAGGTCTGGAGGCTGCACTGCCTATACTTCCGTTGTCGATATTCGACCTCAAGATCCTGTTGATAACTGGAACTATGGCATTGAGCTTCAATGGTTGACTCCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

211

Amino Acids

23.72

Weight (kDa)

5.14

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	25 - 82	4e-11	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	470
AccB1I	GGYRCC	2 cut(s)	68, 470
AccB7I	CCANNNNNTGG	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	402
AciI	CCGC	2 cut(s)	188, 400
AclWI	GGATC	2 cut(s)	202, 575
AcuI	CTGAAG	2 cut(s)	158, 282
AfaI	GTAC	2 cut(s)	203, 472
AfeI	AGCGCT	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	45, 83
AflII	CTTAAG	1 cut(s)	319
AflIII	ACRYGT	1 cut(s)	287
AgsI	TTSAA	4 cut(s)	346, 379, 493, 617
AluBI	AGCT	4 cut(s)	59, 238, 429, 613
AluI	AGCT	4 cut(s)	59, 238, 429, 613
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	202, 575
AlwNI	CAGNNNCTG	1 cut(s)	432
Aor51HI	AGCGCT	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	480, 540
Asp718I	GGTACC	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	28
BanI	GGYRCC	2 cut(s)	68, 470
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	467, 527
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BclI	TGATCA	2 cut(s)	33, 519
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	92, 138
BfmI	CTRYAG	1 cut(s)	433
BfoI	RGCGCY	1 cut(s)	337
BfrI	CTTAAG	1 cut(s)	319
BisI	GCNGC	2 cut(s)	481, 541
BlsI	GCNGC	2 cut(s)	482, 542
BmiI	GGNNCC	2 cut(s)	70, 472
BmsI	GCATC	3 cut(s)	62, 225, 360
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	212
BpuEI	CTTGAG	2 cut(s)	244, 561
BsaBI	GATNNNNATC	2 cut(s)	26, 32
BsaI	GGTCTC	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 83
Bse1I	ACTGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	172
Bse8I	GATNNNNATC	2 cut(s)	26, 32
BseGI	GGATG	1 cut(s)	277
BseJI	GATNNNNATC	2 cut(s)	26, 32
BseLI	CCNNNNNNNGG	2 cut(s)	45, 83
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	599
BseXI	GCAGC	2 cut(s)	467, 527
BsgI	GTGCAG	1 cut(s)	526
BshNI	GGYRCC	2 cut(s)	68, 470
BslI	CCNNNNNNNGG	2 cut(s)	45, 83
BsmAI	GTCTC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	126
Bsp143I	GATC	7 cut(s)	27, 33, 61, 207, 256, 519, 580
BspACI	CCGC	2 cut(s)	188, 400
BspCNI	CTCAG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	70, 472
BspMAI	CTGCAG	1 cut(s)	437
BspPI	GGATC	2 cut(s)	202, 575
BspT107I	GGYRCC	2 cut(s)	68, 470
BspTI	CTTAAG	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	599
BssMI	GATC	7 cut(s)	27, 33, 61, 207, 256, 519, 580
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	313
BstAFI	CTTAAG	1 cut(s)	319
BstC8I	GCNNGC	5 cut(s)	51, 73, 338, 404, 437
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	7 cut(s)	30, 36, 64, 210, 259, 522, 583
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	7 cut(s)	27, 33, 61, 207, 256, 519, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNSI	RCATGY	2 cut(s)	53, 291
BstSFI	CTRYAG	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	467, 527
BstX2I	RGATCY	2 cut(s)	207, 580
BstYI	RGATCY	2 cut(s)	207, 580
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	2 cut(s)	114, 543
Cac8I	GCNNGC	5 cut(s)	51, 73, 338, 404, 437
CaiI	CAGNNNCTG	1 cut(s)	432
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	336
Csp6I	GTAC	2 cut(s)	202, 471
CviAII	CATG	5 cut(s)	19, 50, 181, 288, 505
CviJI	RGCY	8 cut(s)	59, 90, 238, 250, 318, 429, 540, 613
CviKI_1	RGCY	8 cut(s)	59, 90, 238, 250, 318, 429, 540, 613
CviQI	GTAC	2 cut(s)	202, 471
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	7 cut(s)	29, 35, 63, 209, 258, 521, 582
DpnII	GATC	7 cut(s)	27, 33, 61, 207, 256, 519, 580
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	124
Eco47III	AGCGCT	1 cut(s)	335
Eco57I	CTGAAG	2 cut(s)	158, 282
EcoRV	GATATC	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	55
FaeI	CATG	5 cut(s)	22, 53, 184, 291, 508
FatI	CATG	5 cut(s)	18, 49, 180, 287, 504
FbaI	TGATCA	2 cut(s)	33, 519
Fnu4HI	GCNGC	2 cut(s)	481, 541
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	481, 541
FspBI	CTAG	2 cut(s)	92, 138
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	2 cut(s)	481, 541
GsuI	CTGGAG	1 cut(s)	555
HaeII	RGCGCY	1 cut(s)	337
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	5 cut(s)	22, 53, 184, 291, 508
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HinfI	GANTC	3 cut(s)	324, 497, 625
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	624
Hpy188I	TCNGA	2 cut(s)	301, 388
Hpy188III	TCNNGA	5 cut(s)	19, 31, 490, 534, 578
Hpy8I	GTNNAC	1 cut(s)	624
HpyAV	CCTTC	3 cut(s)	185, 352, 487
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	53, 156, 435, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	5 cut(s)	22, 53, 184, 291, 508
HspAI	GCGC	1 cut(s)	334
KpnI	GGTACC	1 cut(s)	474
Ksp22I	TGATCA	2 cut(s)	33, 519
Kzo9I	GATC	7 cut(s)	27, 33, 61, 207, 256, 519, 580
LpnPI	CCDG	8 cut(s)	85, 267, 421, 508, 514, 519, 580, 597
Lsp1109I	GCAGC	2 cut(s)	467, 527
LweI	GCATC	3 cut(s)	62, 225, 360
MaeI	CTAG	2 cut(s)	92, 138
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	7 cut(s)	29, 35, 63, 209, 258, 521, 582
MbiI	CCGCTC	1 cut(s)	402
MboI	GATC	7 cut(s)	27, 33, 61, 207, 256, 519, 580
MboII	GAAGA	2 cut(s)	288, 300
MfeI	CAATTG	1 cut(s)	379
MflI	RGATCY	2 cut(s)	207, 580
MluCI	AATT	3 cut(s)	42, 379, 412
MlyI	GAGTC	2 cut(s)	318, 619
MnlI	CCTC	8 cut(s)	221, 417, 430, 439, 451, 461, 530, 585
Mph1103I	ATGCAT	1 cut(s)	55
MseI	TTAA	2 cut(s)	198, 320
MslI	CAYNNNNRTG	2 cut(s)	23, 368
MspA1I	CMGCKG	2 cut(s)	59, 188
MspCI	CTTAAG	1 cut(s)	319
MunI	CAATTG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	162
NdeII	GATC	7 cut(s)	27, 33, 61, 207, 256, 519, 580
NlaIII	CATG	5 cut(s)	22, 53, 184, 291, 508
NlaIV	GGNNCC	2 cut(s)	70, 472
NsiI	ATGCAT	1 cut(s)	55
NspI	RCATGY	2 cut(s)	53, 291
PaeI	GCATGC	1 cut(s)	53
PagI	TCATGA	1 cut(s)	18
PciI	ACATGT	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	497
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	482, 542
PleI	GAGTC	2 cut(s)	318, 619
PpsI	GAGTC	2 cut(s)	318, 619
PscI	ACATGT	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	70, 472
PstI	CTGCAG	1 cut(s)	437
PstNI	CAGNNNCTG	1 cut(s)	432
PsuI	RGATCY	2 cut(s)	207, 580
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	2 cut(s)	203, 472
RsaNI	GTAC	2 cut(s)	202, 471
RseI	CAYNNNNRTG	2 cut(s)	23, 368
SaqAI	TTAA	2 cut(s)	198, 320
SatI	GCNGC	2 cut(s)	481, 541
Sau3AI	GATC	7 cut(s)	27, 33, 61, 207, 256, 519, 580
SchI	GAGTC	2 cut(s)	318, 619
SetI	ASST	9 cut(s)	61, 240, 256, 431, 456, 472, 533, 577, 615
SfaNI	GCATC	3 cut(s)	62, 225, 360
SfcI	CTRYAG	1 cut(s)	433
SmiMI	CAYNNNNRTG	2 cut(s)	23, 368
SmlI	CTYRAG	3 cut(s)	223, 319, 576
SmoI	CTYRAG	3 cut(s)	223, 319, 576
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	3 cut(s)	42, 379, 412
SsiI	CCGC	2 cut(s)	188, 400
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	2 cut(s)	92, 138
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	4 cut(s)	219, 327, 564, 571
TasI	AATT	3 cut(s)	42, 379, 412
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	2 cut(s)	198, 320
Tru9I	TTAA	2 cut(s)	198, 320
TscAI	CASTG	2 cut(s)	121, 550
TseI	GCWGC	2 cut(s)	480, 540
TspDTI	ATGAA	3 cut(s)	169, 183, 501
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	2 cut(s)	121, 550
Van91I	CCANNNNNTGG	1 cut(s)	83
Vha464I	CTTAAG	1 cut(s)	319
XceI	RCATGY	2 cut(s)	53, 291
XspI	CTAG	2 cut(s)	92, 138
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.