Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Forward (+)

6063040 .. 6064145

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42340

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTAACCAGCACTAGTAGAGTACTCGAAATAATTTCGATGTTATTTGTGGTGATCATTATCATGATCACCAAAATGGGGCATGTATCAGCTGATCTTGGTGCTTGCCCAAAATGTGGTAGCCTAGAAGTTCCATACCCTTTTAGCACTGATGATAGTTGTGGAGACCCTAGATACAAAATCTATTGCAACAATGGCAATGAACTTCAATTCATGTCAGCTGAAGGGTTTAAGTACAAGATCCTCAGCATCGACTCGAGTGCCAACAGGCTCATTATACACCCACCTGATTTCTTAGTAGAGAATAACACTTCTACATGTTATTCTTCAGATTTCTCTTCACAAGGCTTAAGACTCGATGAACACTTGCCCTTCAACATTTCTACTCGTAACACCGTGATGCTGTTCAATTGCTCGGATAATATTCTCCTCTCGCCTCTAAATTGTTCCTCAAACAGCTTCTGCAGGCAGTTTGAGGATAAGATTGAGGCATGCAGAGGTACCCTTTGCTGCCACTTCTTGAAGGATTCCCACATGACTTCATACATGATCAGGGTCAGGCTTGGAGGCTGCACTGCTTATACTTCTGTTGTCGATATTCGACCTCAAGATCCAGTTGATAACTGGAACTATGGAATTGAGCTTCAATGGTTGCCTCCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

221

Amino Acids

24.86

Weight (kDa)

5.3

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	36 - 93	1e-11	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	500
AccB7I	CCANNNNNTGG	1 cut(s)	116
AclWI	GGATC	2 cut(s)	235, 605
AcuI	CTGAAG	2 cut(s)	243, 312
AfaI	GTAC	3 cut(s)	24, 236, 502
AfiI	CCNNNNNNNGG	2 cut(s)	78, 116
AflII	CTTAAG	1 cut(s)	349
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	5 cut(s)	209, 376, 409, 523, 647
AhlI	ACTAGT	1 cut(s)	14
AluBI	AGCT	4 cut(s)	92, 221, 459, 643
AluI	AGCT	4 cut(s)	92, 221, 459, 643
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	235, 605
AlwNI	CAGNNNCTG	1 cut(s)	462
Ama87I	CYCGRG	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	510, 570
Asp718I	GGTACC	1 cut(s)	500
AsuHPI	GGTGA	2 cut(s)	61, 64
AvaI	CYCGRG	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	500
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	497, 557
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BclI	TGATCA	3 cut(s)	54, 66, 549
BcoDI	GTCTC	1 cut(s)	159
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	3 cut(s)	15, 125, 171
BfmI	CTRYAG	1 cut(s)	463
BfrI	CTTAAG	1 cut(s)	349
BisI	GCNGC	2 cut(s)	511, 571
BlsI	GCNGC	2 cut(s)	512, 572
BmcAI	AGTACT	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	502
BmsI	GCATC	2 cut(s)	258, 390
Bpu10I	CCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	591
BsaBI	GATNNNNATC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 116
Bse1I	ACTGG	2 cut(s)	614, 629
Bse3DI	GCAATG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	59
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	78, 116
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	2 cut(s)	614, 629
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	497, 557
BsgI	GTGCAG	1 cut(s)	556
BshNI	GGYRCC	1 cut(s)	500
BsiHKCI	CYCGRG	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	78, 116
BsmAI	GTCTC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	256
Bsp143I	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
BspCNI	CTCAG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	502
BspMAI	CTGCAG	1 cut(s)	467
BspPI	GGATC	2 cut(s)	235, 605
BspT107I	GGYRCC	1 cut(s)	500
BspTI	CTTAAG	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	614, 629
BssMI	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	343
BstAFI	CTTAAG	1 cut(s)	349
BstC8I	GCNNGC	3 cut(s)	106, 467, 493
BstDEI	CTNAG	2 cut(s)	245, 295
BstEII	GGTNACC	1 cut(s)	4
BstKTI	GATC	6 cut(s)	57, 69, 97, 243, 552, 613
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNSI	RCATGY	3 cut(s)	86, 321, 495
BstPI	GGTNACC	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	2 cut(s)	497, 557
BstX2I	RGATCY	2 cut(s)	240, 610
BstYI	RGATCY	2 cut(s)	240, 610
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	147, 573
Cac8I	GCNNGC	3 cut(s)	106, 467, 493
CaiI	CAGNNNCTG	1 cut(s)	462
CciI	TCATGA	1 cut(s)	63
Csp6I	GTAC	3 cut(s)	23, 235, 501
CviAII	CATG	7 cut(s)	64, 83, 214, 318, 492, 535, 547
CviJI	RGCY	9 cut(s)	92, 123, 221, 271, 348, 459, 562, 570, 643
CviKI_1	RGCY	9 cut(s)	92, 123, 221, 271, 348, 459, 562, 570, 643
CviQI	GTAC	3 cut(s)	23, 235, 501
DdeI	CTNAG	2 cut(s)	245, 295
DpnI	GATC	6 cut(s)	56, 68, 96, 242, 551, 612
DpnII	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	159
Eco57I	CTGAAG	2 cut(s)	243, 312
Eco88I	CYCGRG	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
FaeI	CATG	7 cut(s)	67, 86, 217, 321, 495, 538, 550
FatI	CATG	7 cut(s)	63, 82, 213, 317, 491, 534, 546
FbaI	TGATCA	3 cut(s)	54, 66, 549
Fnu4HI	GCNGC	2 cut(s)	511, 571
Fsp4HI	GCNGC	2 cut(s)	511, 571
FspBI	CTAG	3 cut(s)	15, 125, 171
GluI	GCNGC	2 cut(s)	511, 571
Hin1II	CATG	7 cut(s)	67, 86, 217, 321, 495, 538, 550
HinfI	GANTC	3 cut(s)	254, 354, 527
HphI	GGTGA	2 cut(s)	61, 64
Hpy188I	TCNGA	2 cut(s)	331, 418
Hpy188III	TCNNGA	3 cut(s)	64, 520, 608
HpyAV	CCTTC	3 cut(s)	218, 382, 517
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	4 cut(s)	189, 465, 495, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	2 cut(s)	245, 295
Hsp92II	CATG	7 cut(s)	67, 86, 217, 321, 495, 538, 550
KpnI	GGTACC	1 cut(s)	504
Ksp22I	TGATCA	3 cut(s)	54, 66, 549
Kzo9I	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
LpnPI	CCDG	8 cut(s)	22, 253, 300, 451, 538, 544, 610, 627
Lsp1109I	GCAGC	2 cut(s)	497, 557
LweI	GCATC	2 cut(s)	258, 390
MaeI	CTAG	3 cut(s)	15, 125, 171
MaeIII	GTNAC	2 cut(s)	4, 389
MalI	GATC	6 cut(s)	56, 68, 96, 242, 551, 612
MboI	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
MboII	GAAGA	2 cut(s)	318, 330
MfeI	CAATTG	1 cut(s)	409
MflI	RGATCY	2 cut(s)	240, 610
MluCI	AATT	5 cut(s)	33, 209, 409, 442, 636
MlyI	GAGTC	2 cut(s)	248, 348
MseI	TTAA	2 cut(s)	231, 350
MslI	CAYNNNNRTG	3 cut(s)	62, 74, 398
MspA1I	CMGCKG	2 cut(s)	92, 221
MspCI	CTTAAG	1 cut(s)	349
MunI	CAATTG	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	195
NdeII	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
NlaIII	CATG	7 cut(s)	67, 86, 217, 321, 495, 538, 550
NlaIV	GGNNCC	1 cut(s)	502
NspI	RCATGY	3 cut(s)	86, 321, 495
PaeI	GCATGC	1 cut(s)	495
PaeR7I	CTCGAG	1 cut(s)	256
PagI	TCATGA	1 cut(s)	63
PciI	ACATGT	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	512, 572
PleI	GAGTC	2 cut(s)	248, 348
PpsI	GAGTC	2 cut(s)	248, 348
PscI	ACATGT	1 cut(s)	317
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	502
PspXI	VCTCGAGB	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	462
PsuI	RGATCY	2 cut(s)	240, 610
PvuII	CAGCTG	2 cut(s)	92, 221
RsaI	GTAC	3 cut(s)	24, 236, 502
RsaNI	GTAC	3 cut(s)	23, 235, 501
RseI	CAYNNNNRTG	3 cut(s)	62, 74, 398
SaqAI	TTAA	2 cut(s)	231, 350
SatI	GCNGC	2 cut(s)	511, 571
Sau3AI	GATC	6 cut(s)	54, 66, 94, 240, 549, 610
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	2 cut(s)	248, 348
SetI	ASST	7 cut(s)	94, 223, 289, 461, 502, 607, 645
SfaNI	GCATC	2 cut(s)	258, 390
SfcI	CTRYAG	1 cut(s)	463
Sfr274I	CTCGAG	1 cut(s)	256
SlaI	CTCGAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	3 cut(s)	62, 74, 398
SmlI	CTYRAG	3 cut(s)	256, 349, 606
SmoI	CTYRAG	3 cut(s)	256, 349, 606
SpeI	ACTAGT	1 cut(s)	14
SphI	GCATGC	1 cut(s)	495
Sse9I	AATT	5 cut(s)	33, 209, 409, 442, 636
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	3 cut(s)	15, 125, 171
TaaI	ACNGT	1 cut(s)	397
TaqI	TCGA	7 cut(s)	27, 38, 252, 257, 357, 594, 601
TasI	AATT	5 cut(s)	33, 209, 409, 442, 636
TatI	WGTACW	2 cut(s)	22, 234
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	2 cut(s)	231, 350
Tru9I	TTAA	2 cut(s)	231, 350
TscAI	CASTG	2 cut(s)	154, 580
TseI	GCWGC	2 cut(s)	510, 570
TspDTI	ATGAA	4 cut(s)	202, 216, 375, 531
TspRI	CASTG	2 cut(s)	154, 580
Van91I	CCANNNNNTGG	1 cut(s)	116
Vha464I	CTTAAG	1 cut(s)	349
XceI	RCATGY	3 cut(s)	86, 321, 495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	621
XhoI	CTCGAG	1 cut(s)	256
XspI	CTAG	3 cut(s)	15, 125, 171
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.