Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Reverse (-)

43636425 .. 43637250

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025290

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTTATTTGTGGTGATCATGATCATGATCACCAAAATCGTGCATGTATCAGCTGATCTTGGTGCTTGCCCAAAATGTGGTAGCCTAGAAGTTCCATACCCTTTGAGCACTGATGATAGCTGTGGAGACCCTAGATATAAAATCTACTGCAACAATGGCAACGAACTTCAGTTCCTGTCAGCTGAAGGGTTTAAGTACAAGATCCTCAGCATCGACTCGAGTGCCAGCAAGCTCATTATACAGCCACCTGATCTGTTAGTGGTGGATAATACCACTACTACATGTTACTCTTCAGATTTCTCTTCACAAGGCTTAATACTCGATGAGCGCTTGCCCTTCAACATTTCTACTCGTAACACCGTGATGCTGTTCAATTGCTCGGATAATACTCTCCTCACGCCTCTAAATTGTTCCTCAAACAGCTTCTGCAGGCAGTTTGAGGATAAGATTGAGGCATGCAAAGGTACCCTTTGCTGCCACTTCTTGAAGGCTTCCTTCGTATCTTCATATATGATCAGGGTCAGGCCTGGAGGCTGCACTGCTTATACTTCTGTTGTCGATATTCGACCTCAAGATCCAGTTGATAACTGGAACTATGGAATTGAGCTTCAATGGTTGCCTCCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

210

Amino Acids

23.27

Weight (kDa)

4.97

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	23 - 80	4.2e-10	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	464
AccB7I	CCANNNNNTGG	1 cut(s)	77
AclWI	GGATC	2 cut(s)	196, 569
AcuI	CTGAAG	3 cut(s)	152, 204, 276
AfaI	GTAC	2 cut(s)	197, 466
AfeI	AGCGCT	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	340, 373, 487, 611
AjnI	CCWGG	1 cut(s)	526
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	6 cut(s)	53, 120, 182, 232, 423, 607
AluI	AGCT	6 cut(s)	53, 120, 182, 232, 423, 607
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	196, 569
AlwNI	CAGNNNCTG	2 cut(s)	175, 426
Ama87I	CYCGRG	1 cut(s)	217
Aor51HI	AGCGCT	1 cut(s)	329
AoxI	GGCC	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	474, 534
Asp718I	GGTACC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	22, 25
AvaI	CYCGRG	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	461, 521
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	4 cut(s)	15, 21, 27, 513
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	86, 132
BfmI	CTRYAG	1 cut(s)	427
BfoI	RGCGCY	1 cut(s)	331
BisI	GCNGC	2 cut(s)	475, 535
BlsI	GCNGC	2 cut(s)	476, 536
Bme1390I	CCNGG	1 cut(s)	528
BmeT110I	CYCGRG	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	2 cut(s)	219, 354
BpmI	CTGGAG	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	555
BsaBI	GATNNNNATC	2 cut(s)	20, 26
BsaI	GGTCTC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	2 cut(s)	578, 593
Bse8I	GATNNNNATC	2 cut(s)	20, 26
BseBI	CCWGG	1 cut(s)	528
BseJI	GATNNNNATC	2 cut(s)	20, 26
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	2 cut(s)	578, 593
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	461, 521
BsgI	GTGCAG	1 cut(s)	520
BshFI	GGCC	1 cut(s)	526
BshNI	GGYRCC	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	110
BsiHKCI	CYCGRG	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	526
Bso31I	GGTCTC	1 cut(s)	120
BsoBI	CYCGRG	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	8 cut(s)	15, 21, 27, 55, 201, 250, 513, 574
BspANI	GGCC	1 cut(s)	526
BspCNI	CTCAG	1 cut(s)	219
BspHI	TCATGA	2 cut(s)	18, 24
BspLI	GGNNCC	1 cut(s)	466
BspMAI	CTGCAG	1 cut(s)	431
BspPI	GGATC	2 cut(s)	196, 569
BspT107I	GGYRCC	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	578, 593
BssMI	GATC	8 cut(s)	15, 21, 27, 55, 201, 250, 513, 574
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	295, 307
BstC8I	GCNNGC	6 cut(s)	67, 226, 230, 332, 431, 457
BstDEI	CTNAG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	8 cut(s)	18, 24, 30, 58, 204, 253, 516, 577
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	8 cut(s)	15, 21, 27, 55, 201, 250, 513, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	3 cut(s)	47, 285, 459
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	1 cut(s)	427
BstV1I	GCAGC	2 cut(s)	461, 521
BstX2I	RGATCY	2 cut(s)	201, 574
BstYI	RGATCY	2 cut(s)	201, 574
BsuRI	GGCC	1 cut(s)	526
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	2 cut(s)	108, 537
Cac8I	GCNNGC	6 cut(s)	67, 226, 230, 332, 431, 457
CaiI	CAGNNNCTG	2 cut(s)	175, 426
CciI	TCATGA	2 cut(s)	18, 24
CfoI	GCGC	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	196, 465
CviAII	CATG	5 cut(s)	19, 25, 44, 282, 456
CviQI	GTAC	2 cut(s)	196, 465
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	8 cut(s)	17, 23, 29, 57, 203, 252, 515, 576
DpnII	GATC	8 cut(s)	15, 21, 27, 55, 201, 250, 513, 574
Eam1104I	CTCTTC	2 cut(s)	295, 307
EarI	CTCTTC	2 cut(s)	295, 307
Eco147I	AGGCCT	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	120
Eco47III	AGCGCT	1 cut(s)	329
Eco57I	CTGAAG	3 cut(s)	152, 204, 276
Eco88I	CYCGRG	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	526
FaeI	CATG	5 cut(s)	22, 28, 47, 285, 459
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 479, 511
FatI	CATG	5 cut(s)	18, 24, 43, 281, 455
FbaI	TGATCA	4 cut(s)	15, 21, 27, 513
Fnu4HI	GCNGC	2 cut(s)	475, 535
Fsp4HI	GCNGC	2 cut(s)	475, 535
FspBI	CTAG	2 cut(s)	86, 132
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	2 cut(s)	475, 535
GsuI	CTGGAG	1 cut(s)	549
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	526
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	5 cut(s)	22, 28, 47, 285, 459
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	1 cut(s)	215
HphI	GGTGA	2 cut(s)	22, 25
Hpy188I	TCNGA	2 cut(s)	295, 382
Hpy188III	TCNNGA	4 cut(s)	19, 25, 484, 572
HpyAV	CCTTC	4 cut(s)	179, 346, 481, 505
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	5 cut(s)	43, 150, 429, 459, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	5 cut(s)	22, 28, 47, 285, 459
HspAI	GCGC	1 cut(s)	328
KpnI	GGTACC	1 cut(s)	468
Ksp22I	TGATCA	4 cut(s)	15, 21, 27, 513
Kzo9I	GATC	8 cut(s)	15, 21, 27, 55, 201, 250, 513, 574
Lsp1109I	GCAGC	2 cut(s)	461, 521
LweI	GCATC	2 cut(s)	219, 354
MaeI	CTAG	2 cut(s)	86, 132
MaeIII	GTNAC	2 cut(s)	284, 353
MalI	GATC	8 cut(s)	17, 23, 29, 57, 203, 252, 515, 576
MboI	GATC	8 cut(s)	15, 21, 27, 55, 201, 250, 513, 574
MboII	GAAGA	3 cut(s)	282, 294, 495
MfeI	CAATTG	1 cut(s)	373
MflI	RGATCY	2 cut(s)	201, 574
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	3 cut(s)	373, 406, 600
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	9 cut(s)	215, 404, 411, 424, 433, 445, 524, 579, 630
MseI	TTAA	2 cut(s)	192, 314
MslI	CAYNNNNRTG	2 cut(s)	23, 362
MspA1I	CMGCKG	2 cut(s)	53, 182
MspR9I	CCNGG	1 cut(s)	528
MunI	CAATTG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeII	GATC	8 cut(s)	15, 21, 27, 55, 201, 250, 513, 574
NlaIII	CATG	5 cut(s)	22, 28, 47, 285, 459
NlaIV	GGNNCC	1 cut(s)	466
NspI	RCATGY	3 cut(s)	47, 285, 459
PaeI	GCATGC	1 cut(s)	459
PaeR7I	CTCGAG	1 cut(s)	217
PagI	TCATGA	2 cut(s)	18, 24
PceI	AGGCCT	1 cut(s)	526
PciI	ACATGT	1 cut(s)	281
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	476, 536
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PscI	ACATGT	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	466
PspXI	VCTCGAGB	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	431
PstNI	CAGNNNCTG	2 cut(s)	175, 426
PsuI	RGATCY	2 cut(s)	201, 574
PvuII	CAGCTG	2 cut(s)	53, 182
RsaI	GTAC	2 cut(s)	197, 466
RsaNI	GTAC	2 cut(s)	196, 465
RseI	CAYNNNNRTG	2 cut(s)	23, 362
SaqAI	TTAA	2 cut(s)	192, 314
SatI	GCNGC	2 cut(s)	475, 535
Sau3AI	GATC	8 cut(s)	15, 21, 27, 55, 201, 250, 513, 574
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	9 cut(s)	55, 122, 184, 234, 250, 425, 466, 571, 609
SfaNI	GCATC	2 cut(s)	219, 354
SfcI	CTRYAG	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	23, 362
SmlI	CTYRAG	2 cut(s)	217, 570
SmoI	CTYRAG	2 cut(s)	217, 570
SphI	GCATGC	1 cut(s)	459
Sse9I	AATT	3 cut(s)	373, 406, 600
SseBI	AGGCCT	1 cut(s)	526
SspMI	CTAG	2 cut(s)	86, 132
StuI	AGGCCT	1 cut(s)	526
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	5 cut(s)	213, 218, 321, 558, 565
TasI	AATT	3 cut(s)	373, 406, 600
TatI	WGTACW	1 cut(s)	195
Tru1I	TTAA	2 cut(s)	192, 314
Tru9I	TTAA	2 cut(s)	192, 314
TscAI	CASTG	2 cut(s)	115, 544
TseI	GCWGC	2 cut(s)	474, 534
TspDTI	ATGAA	1 cut(s)	495
TspRI	CASTG	2 cut(s)	115, 544
Van91I	CCANNNNNTGG	1 cut(s)	77
XceI	RCATGY	3 cut(s)	47, 285, 459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	585
XhoI	CTCGAG	1 cut(s)	217
XspI	CTAG	2 cut(s)	86, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.