Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Reverse (-)

28189441 .. 28190345

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G316900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGTTTTGACATTTTTTGTGCTCATGCTCATGAATATCATCAAAACTGGCCATGTATCAGCCCTTGGATCTTGCCCAAAATGCGGCAATGTGGAAGTTCCATACCCTTTCAGCACAGATGACACGTGCGGAGATTCAAGGTACAAAATCTACTGCAACAACAGCAACAATGGCAATGGCATTCTTGAGTTCAAGTCAGCTGAAGGGTTTTACTACAAGATCCTCAGCATTGACCCGAGTGCTCAGAGGCTCATCATAAGTCCACCTGATCTGGTACAAGATGGTGACACGTGTCAAACTTCTGATTTCTCTCTTCAAGGCTTGAGGCTTGATGAACACTTGCCCTTCAATGTGTCCACTCGCAACACAGTCATCTTGCTCAATTGCTCTGACAATCTGCTTCGATCTCCTCTCAACTGTACCTCAAATAGCCTCTGTAGGGTTTTTCAGGACAAATTGTTGGAGGGCAAAAACAATGCATGCAAAGGTGGCCTCTGCTGCCATTACTTGAAAGATTCACATATGACTTCTTATGTGATCAGGGTTAGGGTTGGAGGCTGCACTGCTTATACTTCTGTGGTTGATATTCGACCTGAAGATCCTGTTGAGAAATGGAGCTATGGCATTGAGCTGCAATGGCTGCCTCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

218

Amino Acids

24.17

Weight (kDa)

5.78

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	84, 129
AclWI	GGATC	3 cut(s)	76, 214, 593
AcoI	YGGCCR	1 cut(s)	49
AcuI	CTGAAG	2 cut(s)	222, 615
AcvI	CACGTG	2 cut(s)	126, 291
AfaI	GTAC	3 cut(s)	143, 276, 421
AfiI	CCNNNNNNNGG	2 cut(s)	83, 439
AflIII	ACRYGT	3 cut(s)	123, 288, 290
AgsI	TTSAA	5 cut(s)	138, 193, 317, 349, 511
AluBI	AGCT	3 cut(s)	200, 618, 631
AluI	AGCT	3 cut(s)	200, 618, 631
Alw21I	GWGCWC	2 cut(s)	24, 244
AlwI	GGATC	3 cut(s)	76, 214, 593
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	2 cut(s)	49, 490
ApeKI	GCWGC	4 cut(s)	498, 558, 631, 640
AsuHPI	GGTGA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	51
BbrPI	CACGTG	2 cut(s)	126, 291
Bbv12I	GWGCWC	2 cut(s)	24, 244
BbvCI	CCTCAGC	1 cut(s)	224
BbvI	GCAGC	4 cut(s)	485, 545, 618, 627
BccI	CCATC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	537
BfmI	CTRYAG	1 cut(s)	436
BisI	GCNGC	5 cut(s)	85, 499, 559, 632, 641
BlsI	GCNGC	5 cut(s)	86, 500, 560, 633, 642
BmeT110I	CYCGRG	1 cut(s)	235
BoxI	GACNNNNGTC	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	224
BpuEI	CTTGAG	2 cut(s)	206, 343
BsaAI	YACGTR	2 cut(s)	126, 291
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 439
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	3 cut(s)	94, 181, 641
BseDI	CCNNGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	2 cut(s)	83, 439
BseMI	GCAATG	3 cut(s)	94, 181, 641
BseMII	CTCAG	2 cut(s)	238, 257
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	399
BseXI	GCAGC	4 cut(s)	485, 545, 618, 627
BsgI	GTGCAG	1 cut(s)	544
BshFI	GGCC	2 cut(s)	51, 492
BsiHKAI	GWGCWC	2 cut(s)	24, 244
BsiHKCI	CYCGRG	1 cut(s)	235
BslI	CCNNNNNNNGG	2 cut(s)	83, 439
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	2 cut(s)	51, 492
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	24, 244
Bsp143I	GATC	6 cut(s)	68, 219, 268, 404, 537, 598
BspACI	CCGC	2 cut(s)	84, 129
BspANI	GGCC	2 cut(s)	51, 492
BspCNI	CTCAG	2 cut(s)	237, 256
BspHI	TCATGA	1 cut(s)	30
BspPI	GGATC	3 cut(s)	76, 214, 593
BsrDI	GCAATG	3 cut(s)	94, 181, 641
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	6 cut(s)	68, 219, 268, 404, 537, 598
BssT1I	CCWWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	370, 419
Bst6I	CTCTTC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	640
BstBAI	YACGTR	2 cut(s)	126, 291
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	2 cut(s)	224, 243
BstKTI	GATC	6 cut(s)	71, 222, 271, 407, 540, 601
BstMBI	GATC	6 cut(s)	68, 219, 268, 404, 537, 598
BstMWI	GCNNNNNNNGC	7 cut(s)	81, 162, 171, 489, 498, 637, 640
BstNSI	RCATGY	1 cut(s)	483
BstPAI	GACNNNNGTC	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	436
BstV1I	GCAGC	4 cut(s)	485, 545, 618, 627
BstX2I	RGATCY	3 cut(s)	68, 219, 598
BstYI	RGATCY	3 cut(s)	68, 219, 598
BsuRI	GGCC	2 cut(s)	51, 492
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	1 cut(s)	481
CciI	TCATGA	1 cut(s)	30
Csp6I	GTAC	3 cut(s)	142, 275, 420
CviAII	CATG	4 cut(s)	25, 31, 53, 480
CviQI	GTAC	3 cut(s)	142, 275, 420
DdeI	CTNAG	2 cut(s)	224, 243
DpnI	GATC	6 cut(s)	70, 221, 270, 406, 539, 600
DpnII	GATC	6 cut(s)	68, 219, 268, 404, 537, 598
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	222, 615
Eco72I	CACGTG	2 cut(s)	126, 291
Eco88I	CYCGRG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	4 cut(s)	28, 34, 56, 483
FatI	CATG	4 cut(s)	24, 30, 52, 479
FauNDI	CATATG	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	537
Fnu4HI	GCNGC	5 cut(s)	85, 499, 559, 632, 641
Fsp4HI	GCNGC	5 cut(s)	85, 499, 559, 632, 641
GluI	GCNGC	5 cut(s)	85, 499, 559, 632, 641
HaeIII	GGCC	2 cut(s)	51, 492
Hin1II	CATG	4 cut(s)	28, 34, 56, 483
HinfI	GANTC	2 cut(s)	134, 515
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	2 cut(s)	263, 357
Hpy188I	TCNGA	3 cut(s)	246, 304, 391
Hpy188III	TCNNGA	3 cut(s)	31, 185, 449
Hpy8I	GTNNAC	2 cut(s)	263, 357
HpyAV	CCTTC	2 cut(s)	197, 355
HpyCH4III	ACNGT	2 cut(s)	370, 419
HpyCH4IV	ACGT	2 cut(s)	125, 290
HpyCH4V	TGCA	5 cut(s)	156, 479, 483, 561, 634
HpyF10VI	GCNNNNNNNGC	7 cut(s)	81, 162, 171, 489, 498, 637, 640
HpyF3I	CTNAG	2 cut(s)	224, 243
HpySE526I	ACGT	2 cut(s)	125, 290
Hsp92II	CATG	4 cut(s)	28, 34, 56, 483
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	6 cut(s)	68, 219, 268, 404, 537, 598
LmnI	GCTCC	1 cut(s)	615
LpnPI	CCDG	7 cut(s)	33, 257, 279, 434, 526, 606, 615
Lsp1109I	GCAGC	4 cut(s)	485, 545, 618, 627
MaeII	ACGT	2 cut(s)	125, 290
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	6 cut(s)	70, 221, 270, 406, 539, 600
MboI	GATC	6 cut(s)	68, 219, 268, 404, 537, 598
MboII	GAAGA	2 cut(s)	305, 608
MfeI	CAATTG	1 cut(s)	382
MflI	RGATCY	3 cut(s)	68, 219, 598
MhlI	GDGCHC	2 cut(s)	24, 244
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	3 cut(s)	382, 455, 649
MluNI	TGGCCA	1 cut(s)	51
MmeI	TCCRAC	2 cut(s)	441, 532
Mox20I	TGGCCA	1 cut(s)	51
Mph1103I	ATGCAT	1 cut(s)	481
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	1 cut(s)	652
MslI	CAYNNNNRTG	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	180
MwoI	GCNNNNNNNGC	7 cut(s)	81, 162, 171, 489, 498, 637, 640
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	6 cut(s)	68, 219, 268, 404, 537, 598
NlaIII	CATG	4 cut(s)	28, 34, 56, 483
NmuCI	GTSAC	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	1 cut(s)	483
PaeI	GCATGC	1 cut(s)	483
PagI	TCATGA	1 cut(s)	30
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	134, 515
PkrI	GCNGC	5 cut(s)	86, 500, 560, 633, 642
PmaCI	CACGTG	2 cut(s)	126, 291
PmlI	CACGTG	2 cut(s)	126, 291
Ppu21I	YACGTR	2 cut(s)	126, 291
PshAI	GACNNNNGTC	1 cut(s)	291
PspCI	CACGTG	2 cut(s)	126, 291
PsuI	RGATCY	3 cut(s)	68, 219, 598
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	3 cut(s)	143, 276, 421
RsaNI	GTAC	3 cut(s)	142, 275, 420
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	652
SatI	GCNGC	5 cut(s)	85, 499, 559, 632, 641
Sau3AI	GATC	6 cut(s)	68, 219, 268, 404, 537, 598
SduI	GDGCHC	2 cut(s)	24, 244
SfcI	CTRYAG	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	185, 322
SmoI	CTYRAG	2 cut(s)	185, 322
SphI	GCATGC	1 cut(s)	483
Sse9I	AATT	3 cut(s)	382, 455, 649
SsiI	CCGC	2 cut(s)	84, 129
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	2 cut(s)	370, 419
TaiI	ACGT	2 cut(s)	128, 293
TaqI	TCGA	2 cut(s)	403, 589
TasI	AATT	3 cut(s)	382, 455, 649
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	134, 515
Tru1I	TTAA	1 cut(s)	652
Tru9I	TTAA	1 cut(s)	652
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	4 cut(s)	498, 558, 631, 640
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	47, 348
TspRI	CASTG	1 cut(s)	568
XceI	RCATGY	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.