Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Reverse (-)

43446995 .. 43447669

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTAACTAGTACTAGAAGTAGAGTACTCGAAACAATTTCGATGTTATTTGTGGTGATCATGATTATGATCGTGATCCCCAAAATTGGGCATGTATCAGCTGATCTTGGTGCTTGCCCAAAATGTGGTAGCCTAGAAGTTCCATACCCTTTTAGCACTGATGATAGTTGTGGAGACCCTAGATACAAAATCTACTGCAACAATGGCAATGAACTTCAGTTCATGTCAGCTGAAGGGTTTAAGTACAAGATCCTCAGCATCGACTCGAGTGCCAACAAGCTCATCATACACCCACCTGATTTCTTAGTAGAGAATAACGCTCCTACATGTTCTTCTTCAGATTTCTCTTCACAAGGCTTAAGACTCGATGAACACTTGCCCTTCAACATTTCTACTCGTAACACCGTGATGCTGTTCAATTGCTCGGATAATATTCTCCGCTCGCCTCTAAATTGTTCCTCAAACAGCTTCTGCAGGCAGTTTGAGGATAAGGTTGAGGCGTGTAGAGGTACCCTTTGCTGCCATTTCTTGAAGGATTCCCACATGACTTCATATATGATCAGGGTCAGGTCTGGAGGCTGCACTGCCTATACTTCCGTTGTCGATATTCGACCTCAAGATCCTGTTGATAACTGGAACTATGGCATTGAGCTTCAATGGTTGACTCCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

224

Amino Acids

25.09

Weight (kDa)

5.7

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	39 - 96	1.1e-11	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccBSI	CCGCTC	1 cut(s)	441
AciI	CCGC	1 cut(s)	439
AclWI	GGATC	3 cut(s)	70, 244, 614
AcuI	CTGAAG	3 cut(s)	200, 252, 321
AfaI	GTAC	4 cut(s)	13, 27, 245, 511
AfiI	CCNNNNNNNGG	3 cut(s)	86, 87, 125
AflII	CTTAAG	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	4 cut(s)	385, 418, 532, 656
AhlI	ACTAGT	1 cut(s)	8
AluBI	AGCT	5 cut(s)	101, 230, 280, 468, 652
AluI	AGCT	5 cut(s)	101, 230, 280, 468, 652
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	3 cut(s)	70, 244, 614
AlwNI	CAGNNNCTG	1 cut(s)	471
Ama87I	CYCGRG	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	519, 579
Asp718I	GGTACC	1 cut(s)	509
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	509
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	506, 566
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BclI	TGATCA	2 cut(s)	57, 558
BcoDI	GTCTC	1 cut(s)	168
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	4 cut(s)	9, 15, 134, 180
BfmI	CTRYAG	1 cut(s)	472
BfrI	CTTAAG	1 cut(s)	358
BisI	GCNGC	2 cut(s)	520, 580
BlsI	GCNGC	2 cut(s)	521, 581
BmcAI	AGTACT	2 cut(s)	13, 27
BmeT110I	CYCGRG	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	511
BmsI	GCATC	2 cut(s)	267, 399
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	600
BsaBI	GATNNNNATC	2 cut(s)	68, 74
BsaI	GGTCTC	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 87, 125
Bse1I	ACTGG	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	214
Bse8I	GATNNNNATC	2 cut(s)	68, 74
BseJI	GATNNNNATC	2 cut(s)	68, 74
BseLI	CCNNNNNNNGG	3 cut(s)	86, 87, 125
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	638
BseXI	GCAGC	2 cut(s)	506, 566
BsgI	GTGCAG	1 cut(s)	565
BshNI	GGYRCC	1 cut(s)	509
BsiHKCI	CYCGRG	1 cut(s)	265
BslI	CCNNNNNNNGG	3 cut(s)	86, 87, 125
BsmAI	GTCTC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	265
Bsp143I	GATC	7 cut(s)	57, 69, 75, 103, 249, 558, 619
BspACI	CCGC	1 cut(s)	439
BspCNI	CTCAG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	511
BspMAI	CTGCAG	1 cut(s)	476
BspPI	GGATC	3 cut(s)	70, 244, 614
BspT107I	GGYRCC	1 cut(s)	509
BspTI	CTTAAG	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	638
BssMI	GATC	7 cut(s)	57, 69, 75, 103, 249, 558, 619
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	352
BstAFI	CTTAAG	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	115, 443, 476
BstDEI	CTNAG	2 cut(s)	254, 304
BstKTI	GATC	7 cut(s)	60, 72, 78, 106, 252, 561, 622
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	7 cut(s)	57, 69, 75, 103, 249, 558, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNSI	RCATGY	2 cut(s)	95, 330
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	2 cut(s)	506, 566
BstX2I	RGATCY	2 cut(s)	249, 619
BstYI	RGATCY	2 cut(s)	249, 619
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	2 cut(s)	156, 582
Cac8I	GCNNGC	3 cut(s)	115, 443, 476
CaiI	CAGNNNCTG	1 cut(s)	471
CciI	TCATGA	1 cut(s)	60
Csp6I	GTAC	4 cut(s)	12, 26, 244, 510
CviAII	CATG	5 cut(s)	61, 92, 223, 327, 544
CviJI	RGCY	8 cut(s)	101, 132, 230, 280, 357, 468, 579, 652
CviKI_1	RGCY	8 cut(s)	101, 132, 230, 280, 357, 468, 579, 652
CviQI	GTAC	4 cut(s)	12, 26, 244, 510
DdeI	CTNAG	2 cut(s)	254, 304
DpnI	GATC	7 cut(s)	59, 71, 77, 105, 251, 560, 621
DpnII	GATC	7 cut(s)	57, 69, 75, 103, 249, 558, 619
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	168
Eco57I	CTGAAG	3 cut(s)	200, 252, 321
Eco88I	CYCGRG	1 cut(s)	265
FaeI	CATG	5 cut(s)	64, 95, 226, 330, 547
FatI	CATG	5 cut(s)	60, 91, 222, 326, 543
FbaI	TGATCA	2 cut(s)	57, 558
Fnu4HI	GCNGC	2 cut(s)	520, 580
Fsp4HI	GCNGC	2 cut(s)	520, 580
FspBI	CTAG	4 cut(s)	9, 15, 134, 180
GluI	GCNGC	2 cut(s)	520, 580
GsuI	CTGGAG	1 cut(s)	594
Hin1II	CATG	5 cut(s)	64, 95, 226, 330, 547
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HinfI	GANTC	4 cut(s)	263, 363, 536, 664
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188I	TCNGA	2 cut(s)	340, 427
Hpy188III	TCNNGA	5 cut(s)	61, 73, 529, 573, 617
Hpy8I	GTNNAC	1 cut(s)	663
HpyAV	CCTTC	3 cut(s)	227, 391, 526
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	3 cut(s)	198, 474, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	2 cut(s)	254, 304
Hsp92II	CATG	5 cut(s)	64, 95, 226, 330, 547
KpnI	GGTACC	1 cut(s)	513
Ksp22I	TGATCA	2 cut(s)	57, 558
Kzo9I	GATC	7 cut(s)	57, 69, 75, 103, 249, 558, 619
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	7 cut(s)	309, 460, 547, 553, 558, 619, 636
Lsp1109I	GCAGC	2 cut(s)	506, 566
LweI	GCATC	2 cut(s)	267, 399
MaeI	CTAG	4 cut(s)	9, 15, 134, 180
MaeIII	GTNAC	2 cut(s)	4, 398
MalI	GATC	7 cut(s)	59, 71, 77, 105, 251, 560, 621
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	7 cut(s)	57, 69, 75, 103, 249, 558, 619
MboII	GAAGA	3 cut(s)	324, 327, 339
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	2 cut(s)	249, 619
MluCI	AATT	4 cut(s)	36, 84, 418, 451
MlyI	GAGTC	3 cut(s)	257, 357, 658
MnlI	CCTC	8 cut(s)	263, 456, 469, 478, 490, 500, 569, 624
MseI	TTAA	2 cut(s)	240, 359
MslI	CAYNNNNRTG	2 cut(s)	65, 407
MspA1I	CMGCKG	2 cut(s)	101, 230
MspCI	CTTAAG	1 cut(s)	358
MunI	CAATTG	1 cut(s)	418
MwoI	GCNNNNNNNGC	1 cut(s)	204
NdeII	GATC	7 cut(s)	57, 69, 75, 103, 249, 558, 619
NlaIII	CATG	5 cut(s)	64, 95, 226, 330, 547
NlaIV	GGNNCC	1 cut(s)	511
NspI	RCATGY	2 cut(s)	95, 330
PaeR7I	CTCGAG	1 cut(s)	265
PagI	TCATGA	1 cut(s)	60
PciI	ACATGT	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	521, 581
PleI	GAGTC	3 cut(s)	257, 357, 658
PpsI	GAGTC	3 cut(s)	257, 357, 658
PscI	ACATGT	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	511
PspXI	VCTCGAGB	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	476
PstNI	CAGNNNCTG	1 cut(s)	471
PsuI	RGATCY	2 cut(s)	249, 619
PvuII	CAGCTG	2 cut(s)	101, 230
RsaI	GTAC	4 cut(s)	13, 27, 245, 511
RsaNI	GTAC	4 cut(s)	12, 26, 244, 510
RseI	CAYNNNNRTG	2 cut(s)	65, 407
SaqAI	TTAA	2 cut(s)	240, 359
SatI	GCNGC	2 cut(s)	520, 580
Sau3AI	GATC	7 cut(s)	57, 69, 75, 103, 249, 558, 619
ScaI	AGTACT	2 cut(s)	13, 27
SchI	GAGTC	3 cut(s)	257, 357, 658
SfaNI	GCATC	2 cut(s)	267, 399
SfcI	CTRYAG	1 cut(s)	472
Sfr274I	CTCGAG	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	65, 407
SmlI	CTYRAG	3 cut(s)	265, 358, 615
SmoI	CTYRAG	3 cut(s)	265, 358, 615
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	4 cut(s)	36, 84, 418, 451
SsiI	CCGC	1 cut(s)	439
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	4 cut(s)	9, 15, 134, 180
TaaI	ACNGT	1 cut(s)	406
TaqI	TCGA	7 cut(s)	30, 41, 261, 266, 366, 603, 610
TasI	AATT	4 cut(s)	36, 84, 418, 451
TatI	WGTACW	3 cut(s)	11, 25, 243
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	2 cut(s)	240, 359
Tru9I	TTAA	2 cut(s)	240, 359
TscAI	CASTG	2 cut(s)	163, 589
TseI	GCWGC	2 cut(s)	519, 579
TspDTI	ATGAA	4 cut(s)	211, 225, 384, 540
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	2 cut(s)	163, 589
Van91I	CCANNNNNTGG	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	358
XceI	RCATGY	2 cut(s)	95, 330
XhoI	CTCGAG	1 cut(s)	265
XspI	CTAG	4 cut(s)	9, 15, 134, 180
ZrmI	AGTACT	2 cut(s)	13, 27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.