Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Forward (+)

6073129 .. 6073584

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG078300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCAGCAGAAGGGTTTAAGTACAAGATCCTCAGCATCGACTTGAGTGCCAACAAGCTCATTATACAGCCACCTGATCTGTTAGTGGTGGATAATACCACTACTACATGTTATTCTTCAGATTTCTCTTCACAAGGCTTAAGACTCGATGAGCGCTTGCCCTTCAACATTTCTACTCGTAACACCGTGATGCTGTTCAATTGCTCGGATAATATTCTCCGCTCGCCTCTAAATTGTTCCTCAAACAGCTTCTGCAGGCAGTTTGAGGATAAGGTTGAGGCGTGTAGAGGTACCCTTTGCTGCCATTTCTTGAAGGATTCCCACATGACTTCATATATGATCAGGGTCAGGTCTGGAGGCTGCACTGCCTATACTTCCGTTGTCGATATTCGACCTCAAGATCCTGTTGATAACTGGAACTATGGCATTGAGCTTCAATGGTTGACTCCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

151

Amino Acids

17.12

Weight (kDa)

5.6

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	222
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	2 cut(s)	22, 395
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	23, 292
AfeI	AGCGCT	1 cut(s)	155
AflII	CTTAAG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	166, 199, 313, 437
AluBI	AGCT	3 cut(s)	58, 249, 433
AluI	AGCT	3 cut(s)	58, 249, 433
AlwI	GGATC	2 cut(s)	22, 395
AlwNI	CAGNNNCTG	1 cut(s)	252
Aor51HI	AGCGCT	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	300, 360
Asp718I	GGTACC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	290
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	287, 347
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BclI	TGATCA	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	157
BfrI	CTTAAG	1 cut(s)	139
BisI	GCNGC	2 cut(s)	301, 361
BlsI	GCNGC	2 cut(s)	302, 362
BmiI	GGNNCC	1 cut(s)	292
BmsI	GCATC	2 cut(s)	45, 180
BpmI	CTGGAG	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	2 cut(s)	64, 381
Bse1I	ACTGG	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	287, 347
BsgI	GTGCAG	1 cut(s)	346
BshNI	GGYRCC	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	27, 76, 339, 400
BspACI	CCGC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	292
BspMAI	CTGCAG	1 cut(s)	257
BspPI	GGATC	2 cut(s)	22, 395
BspT107I	GGYRCC	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	419
BssMI	GATC	4 cut(s)	27, 76, 339, 400
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	133
BstAFI	CTTAAG	1 cut(s)	139
BstC8I	GCNNGC	3 cut(s)	158, 224, 257
BstDEI	CTNAG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	30, 79, 342, 403
BstMBI	GATC	4 cut(s)	27, 76, 339, 400
BstNSI	RCATGY	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	287, 347
BstX2I	RGATCY	2 cut(s)	27, 400
BstYI	RGATCY	2 cut(s)	27, 400
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	3 cut(s)	158, 224, 257
CaiI	CAGNNNCTG	1 cut(s)	252
CfoI	GCGC	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	22, 291
CviAII	CATG	2 cut(s)	108, 325
CviJI	RGCY	6 cut(s)	58, 70, 138, 249, 360, 433
CviKI_1	RGCY	6 cut(s)	58, 70, 138, 249, 360, 433
CviQI	GTAC	2 cut(s)	22, 291
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	4 cut(s)	29, 78, 341, 402
DpnII	GATC	4 cut(s)	27, 76, 339, 400
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco47III	AGCGCT	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	102
FaeI	CATG	2 cut(s)	111, 328
FaiI	YATR	8 cut(s)	65, 109, 326, 334, 336, 338, 372, 423
FatI	CATG	2 cut(s)	107, 324
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	301, 361
Fsp4HI	GCNGC	2 cut(s)	301, 361
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	301, 361
GsuI	CTGGAG	1 cut(s)	375
HaeII	RGCGCY	1 cut(s)	157
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	111, 328
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	3 cut(s)	144, 317, 445
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	2 cut(s)	121, 208
Hpy188III	TCNNGA	3 cut(s)	310, 354, 398
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	3 cut(s)	5, 172, 307
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	255, 363
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	111, 328
HspAI	GCGC	1 cut(s)	154
KpnI	GGTACC	1 cut(s)	294
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	27, 76, 339, 400
LpnPI	CCDG	7 cut(s)	87, 241, 328, 334, 339, 400, 417
Lsp1109I	GCAGC	2 cut(s)	287, 347
LweI	GCATC	2 cut(s)	45, 180
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	4 cut(s)	29, 78, 341, 402
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	4 cut(s)	27, 76, 339, 400
MboII	GAAGA	2 cut(s)	108, 120
MfeI	CAATTG	1 cut(s)	199
MflI	RGATCY	2 cut(s)	27, 400
MluCI	AATT	2 cut(s)	199, 232
MlyI	GAGTC	2 cut(s)	138, 439
MnlI	CCTC	8 cut(s)	41, 237, 250, 259, 271, 281, 350, 405
MseI	TTAA	2 cut(s)	18, 140
MslI	CAYNNNNRTG	1 cut(s)	188
MspCI	CTTAAG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	199
NdeII	GATC	4 cut(s)	27, 76, 339, 400
NlaIII	CATG	2 cut(s)	111, 328
NlaIV	GGNNCC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	111
PciI	ACATGT	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	302, 362
PleI	GAGTC	2 cut(s)	138, 439
PpsI	GAGTC	2 cut(s)	138, 439
PscI	ACATGT	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	252
PsuI	RGATCY	2 cut(s)	27, 400
RsaI	GTAC	2 cut(s)	23, 292
RsaNI	GTAC	2 cut(s)	22, 291
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	18, 140
SatI	GCNGC	2 cut(s)	301, 361
Sau3AI	GATC	4 cut(s)	27, 76, 339, 400
SchI	GAGTC	2 cut(s)	138, 439
SetI	ASST	8 cut(s)	60, 76, 251, 276, 292, 353, 397, 435
SfaNI	GCATC	2 cut(s)	45, 180
SfcI	CTRYAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	3 cut(s)	43, 139, 396
SmoI	CTYRAG	3 cut(s)	43, 139, 396
Sse9I	AATT	2 cut(s)	199, 232
SsiI	CCGC	1 cut(s)	220
SspI	AATATT	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	4 cut(s)	39, 147, 384, 391
TasI	AATT	2 cut(s)	199, 232
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	18, 140
Tru9I	TTAA	2 cut(s)	18, 140
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	2 cut(s)	300, 360
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	370
Vha464I	CTTAAG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.