Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000133.1

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Reverse (-)

190817 .. 191284

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000133.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgtcagcagaagggtataagtacaagatcctcagcatcgacttgagtgccaacaagctcattatacagccacctgatctgttagtggtggataataccactactacatgttattcttcagatttctcttcacaaggcttaatactcgatgagcgcttgcccttcaacatttctaatcgtaacaccgtgatgctgttcaattgctcggatagtactctcctcacgcctctaaattgttcctcaaacagcttctgcaggcagtttgaggataagattgaggcatgcagaggtaccctttgctgccacttcttgaaaagttccctcatatcttcatatatgatcagggtcaggcttggaggctgcactgcttatacttctgttgtcgatattcgacctcaagatccagttgataactggaactatggaattgagcttcaatggttgcctcctaaccaaccgattgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

155

Amino Acids

17.45

Weight (kDa)

4.88

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	290
AclWI	GGATC	2 cut(s)	22, 395
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	3 cut(s)	23, 214, 292
AfeI	AGCGCT	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	166, 199, 313, 437
AluBI	AGCT	3 cut(s)	58, 249, 433
AluI	AGCT	3 cut(s)	58, 249, 433
AlwI	GGATC	2 cut(s)	22, 395
AlwNI	CAGNNNCTG	1 cut(s)	252
Aor51HI	AGCGCT	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	300, 360
Asp718I	GGTACC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	290
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	287, 347
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BclI	TGATCA	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	157
BisI	GCNGC	2 cut(s)	301, 361
BlsI	GCNGC	2 cut(s)	302, 362
BmcAI	AGTACT	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	292
BmsI	GCATC	2 cut(s)	45, 180
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	2 cut(s)	64, 381
Bse1I	ACTGG	2 cut(s)	404, 419
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	2 cut(s)	404, 419
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	287, 347
BsgI	GTGCAG	1 cut(s)	346
BshNI	GGYRCC	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	27, 76, 339, 400
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	292
BspMAI	CTGCAG	1 cut(s)	257
BspPI	GGATC	2 cut(s)	22, 395
BspT107I	GGYRCC	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	404, 419
BssMI	GATC	4 cut(s)	27, 76, 339, 400
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	133
BstC8I	GCNNGC	3 cut(s)	158, 257, 283
BstDEI	CTNAG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	30, 79, 342, 403
BstMBI	GATC	4 cut(s)	27, 76, 339, 400
BstNSI	RCATGY	2 cut(s)	111, 285
BstSFI	CTRYAG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	287, 347
BstX2I	RGATCY	2 cut(s)	27, 400
BstYI	RGATCY	2 cut(s)	27, 400
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	3 cut(s)	158, 257, 283
CaiI	CAGNNNCTG	1 cut(s)	252
CfoI	GCGC	1 cut(s)	156
Csp6I	GTAC	3 cut(s)	22, 213, 291
CviAII	CATG	2 cut(s)	108, 282
CviJI	RGCY	7 cut(s)	58, 70, 138, 249, 352, 360, 433
CviKI_1	RGCY	7 cut(s)	58, 70, 138, 249, 352, 360, 433
CviQI	GTAC	3 cut(s)	22, 213, 291
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	4 cut(s)	29, 78, 341, 402
DpnII	GATC	4 cut(s)	27, 76, 339, 400
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco47III	AGCGCT	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	102
FaeI	CATG	2 cut(s)	111, 285
FatI	CATG	2 cut(s)	107, 281
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	301, 361
Fsp4HI	GCNGC	2 cut(s)	301, 361
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	301, 361
HaeII	RGCGCY	1 cut(s)	157
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	111, 285
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	121, 208
Hpy188III	TCNNGA	2 cut(s)	310, 398
HpyAV	CCTTC	2 cut(s)	5, 172
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	255, 285, 363
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	111, 285
HspAI	GCGC	1 cut(s)	154
KpnI	GGTACC	1 cut(s)	294
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	27, 76, 339, 400
LpnPI	CCDG	6 cut(s)	87, 241, 328, 334, 400, 417
Lsp1109I	GCAGC	2 cut(s)	287, 347
LweI	GCATC	2 cut(s)	45, 180
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	4 cut(s)	29, 78, 341, 402
MboI	GATC	4 cut(s)	27, 76, 339, 400
MboII	GAAGA	3 cut(s)	108, 120, 321
MfeI	CAATTG	1 cut(s)	199
MflI	RGATCY	2 cut(s)	27, 400
MluCI	AATT	3 cut(s)	199, 232, 426
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	199
NdeII	GATC	4 cut(s)	27, 76, 339, 400
NlaIII	CATG	2 cut(s)	111, 285
NlaIV	GGNNCC	1 cut(s)	292
NspI	RCATGY	2 cut(s)	111, 285
PaeI	GCATGC	1 cut(s)	285
PciI	ACATGT	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	302, 362
PscI	ACATGT	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	252
PsuI	RGATCY	2 cut(s)	27, 400
RsaI	GTAC	3 cut(s)	23, 214, 292
RsaNI	GTAC	3 cut(s)	22, 213, 291
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	2 cut(s)	301, 361
Sau3AI	GATC	4 cut(s)	27, 76, 339, 400
ScaI	AGTACT	1 cut(s)	214
SetI	ASST	6 cut(s)	60, 76, 251, 292, 397, 435
SfaNI	GCATC	2 cut(s)	45, 180
SfcI	CTRYAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	2 cut(s)	43, 396
SmoI	CTYRAG	2 cut(s)	43, 396
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	3 cut(s)	199, 232, 426
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	4 cut(s)	39, 147, 384, 391
TasI	AATT	3 cut(s)	199, 232, 426
TatI	WGTACW	2 cut(s)	21, 212
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	2 cut(s)	300, 360
TspDTI	ATGAA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	370
XceI	RCATGY	2 cut(s)	111, 285
XcmI	CCANNNNNNNNNTGG	1 cut(s)	411
ZrmI	AGTACT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.