Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000190.1

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Forward (+)

44980 .. 45592

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000190.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgatcatgatcaccaaaatcgggcatgtatcggctgatcttggtgcttgcccaaaatgtggtagcctagaagttccatacccttttagcactgatgatagctgtggagaccctagatataaaatctactgcaacaatggcaatgaacttcagttcatgtcagcagaagggtttaagtacaagatcctcagcatcgacccgagtgccaacaagctcattatacacccacctgatttcttagtagagaataacgctcctacatgcatgcagtttgaggataagattgaggcatgcagaggtaccctttgctgccacttcttgaaaagttccctcatatcttcatatatgatcagggtcaggcttggaggctgcactgcttatacttctgttgtcgatattcgacctcaagatccagttgataactggaactatggaattgagcttcaatggttgcctcctaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

154

Amino Acids

17.22

Weight (kDa)

5.27

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	59
AclWI	GGATC	2 cut(s)	178, 404
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	2 cut(s)	179, 301
AfiI	CCNNNNNNNGG	2 cut(s)	21, 59
AgsI	TTSAA	2 cut(s)	322, 446
AluBI	AGCT	3 cut(s)	102, 214, 442
AluI	AGCT	3 cut(s)	102, 214, 442
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	178, 404
Ama87I	CYCGRG	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	309, 369
Asp718I	GGTACC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	299
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	296, 356
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BclI	TGATCA	3 cut(s)	3, 9, 348
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	2 cut(s)	68, 114
BisI	GCNGC	2 cut(s)	310, 370
BlsI	GCNGC	2 cut(s)	311, 371
BmeT110I	CYCGRG	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 59
Bse1I	ACTGG	2 cut(s)	413, 428
Bse3DI	GCAATG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	21, 59
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	413, 428
BseXI	GCAGC	2 cut(s)	296, 356
BsgI	GTGCAG	1 cut(s)	355
BshNI	GGYRCC	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	21, 59
BsmAI	GTCTC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	199
Bsp143I	GATC	6 cut(s)	3, 9, 37, 183, 348, 409
BspCNI	CTCAG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	2 cut(s)	178, 404
BspT107I	GGYRCC	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	413, 428
BssMI	GATC	6 cut(s)	3, 9, 37, 183, 348, 409
BstC8I	GCNNGC	3 cut(s)	49, 266, 292
BstDEI	CTNAG	2 cut(s)	188, 238
BstKTI	GATC	6 cut(s)	6, 12, 40, 186, 351, 412
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	6 cut(s)	3, 9, 37, 183, 348, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNSI	RCATGY	4 cut(s)	29, 264, 268, 294
BstV1I	GCAGC	2 cut(s)	296, 356
BstX2I	RGATCY	2 cut(s)	183, 409
BstYI	RGATCY	2 cut(s)	183, 409
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	90, 372
Cac8I	GCNNGC	3 cut(s)	49, 266, 292
CciI	TCATGA	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	178, 300
CviAII	CATG	6 cut(s)	7, 26, 157, 261, 265, 291
CviJI	RGCY	7 cut(s)	35, 66, 102, 214, 361, 369, 442
CviKI_1	RGCY	7 cut(s)	35, 66, 102, 214, 361, 369, 442
CviQI	GTAC	2 cut(s)	178, 300
DdeI	CTNAG	2 cut(s)	188, 238
DpnI	GATC	6 cut(s)	5, 11, 39, 185, 350, 411
DpnII	GATC	6 cut(s)	3, 9, 37, 183, 348, 409
Eco31I	GGTCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	266
FaeI	CATG	6 cut(s)	10, 29, 160, 264, 268, 294
FatI	CATG	6 cut(s)	6, 25, 156, 260, 264, 290
FbaI	TGATCA	3 cut(s)	3, 9, 348
Fnu4HI	GCNGC	2 cut(s)	310, 370
Fsp4HI	GCNGC	2 cut(s)	310, 370
FspBI	CTAG	2 cut(s)	68, 114
GluI	GCNGC	2 cut(s)	310, 370
Hin1II	CATG	6 cut(s)	10, 29, 160, 264, 268, 294
HphI	GGTGA	1 cut(s)	4
Hpy188III	TCNNGA	3 cut(s)	7, 319, 407
HpyAV	CCTTC	1 cut(s)	161
HpyCH4V	TGCA	5 cut(s)	132, 264, 268, 294, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	2 cut(s)	188, 238
Hsp92II	CATG	6 cut(s)	10, 29, 160, 264, 268, 294
KpnI	GGTACC	1 cut(s)	303
Ksp22I	TGATCA	3 cut(s)	3, 9, 348
Kzo9I	GATC	6 cut(s)	3, 9, 37, 183, 348, 409
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	5 cut(s)	243, 337, 343, 409, 426
Lsp1109I	GCAGC	2 cut(s)	296, 356
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	2 cut(s)	68, 114
MalI	GATC	6 cut(s)	5, 11, 39, 185, 350, 411
MboI	GATC	6 cut(s)	3, 9, 37, 183, 348, 409
MboII	GAAGA	1 cut(s)	330
MflI	RGATCY	2 cut(s)	183, 409
MluCI	AATT	1 cut(s)	435
MnlI	CCTC	8 cut(s)	197, 268, 280, 290, 341, 359, 414, 465
Mph1103I	ATGCAT	1 cut(s)	266
MseI	TTAA	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	6 cut(s)	3, 9, 37, 183, 348, 409
NlaIII	CATG	6 cut(s)	10, 29, 160, 264, 268, 294
NlaIV	GGNNCC	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	266
NspI	RCATGY	4 cut(s)	29, 264, 268, 294
PaeI	GCATGC	2 cut(s)	268, 294
PagI	TCATGA	1 cut(s)	6
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	311, 371
PspN4I	GGNNCC	1 cut(s)	301
PsuI	RGATCY	2 cut(s)	183, 409
RsaI	GTAC	2 cut(s)	179, 301
RsaNI	GTAC	2 cut(s)	178, 300
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	2 cut(s)	310, 370
Sau3AI	GATC	6 cut(s)	3, 9, 37, 183, 348, 409
SetI	ASST	6 cut(s)	104, 216, 232, 301, 406, 444
SfaNI	GCATC	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
SphI	GCATGC	2 cut(s)	268, 294
Sse9I	AATT	1 cut(s)	435
SspMI	CTAG	2 cut(s)	68, 114
TaqI	TCGA	3 cut(s)	195, 393, 400
TasI	AATT	1 cut(s)	435
TatI	WGTACW	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	97, 379
TseI	GCWGC	2 cut(s)	309, 369
TspDTI	ATGAA	3 cut(s)	145, 159, 330
TspRI	CASTG	2 cut(s)	97, 379
Van91I	CCANNNNNTGG	1 cut(s)	59
XceI	RCATGY	4 cut(s)	29, 264, 268, 294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	420
XspI	CTAG	2 cut(s)	68, 114
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.