Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003585

Physical Location & Seq

Genomic Coordinates Forward (+)

4040901 .. 4047901

Gene Structure 7001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04630.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTATGTTTATCCCAAGGTGAAGGTCAGGCAGCAACAAGAAGAGAAAGATGATCAACATGCCCTTCTTGATTTTGATTCTCCAGGGAAGGATCAAGATGTTTCTCCAGCTACCATTGCAAGAGTTCCAAAATCTTATGTGCCACTGCCAAGAGTAGTTGTGCCATCGATCTCTGTTGCTGAAGGAGTAAAGAAAGCCAATAAGATTGAAGAGATGAATAAACAGAATATTAGAGCCGGCTCAATCCCTCCCCCGCGTGCAGTCTTATCCAGTCCTGATAATGATATGGTGATTGGAAACAAAAATAAGATCAAAGCACAACGATCATCGGCTCTGAAGAATCATAGCATGGTTCAGAATAGAAGTACACAATGTACTCCACTCCGCATTACTGGAAATTCCATAAAAACAAAAAGTTCTAAGGGGACTTTGGTTGAGAACTGTCTTAAGGAAAGGAAAGGATCAGCATCAAAACTAACAAGTCAGATACAACCACCAAGAACTGGGAAACCAAGCTCTAAGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.36

Weight (kDa)

10.13

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21865
fragaria_vesca	FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630
malus_domestica	MD16G1226400.v1.1
prunus_persica	Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1
pyrus_communis	pycom16g18960
rosa_chinensis	RchiOBHm_Chr1g0362101 RchiOBHm_Chr4g0395401
rosa_laevigata	RLG00000009625
rosa_multiflora	Rmu_sc0004598.1_g000001 Rmu_sc0010817.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340360
rosa_rugosa	Rorug01G0293700 Rorug03G0357600
rosa_samantha	Rh1AG304400 Rh2BG188400 Rh4AG059600 Rh4BG058100 Rh4CG063600 Rh4DG054700 Rh6AG105300 Rh7AG389000 Rh7CG408200 Rh7DG387000
rosa_wichuraiana	Rw0G003300 Rw0G007660 Rw4G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccII	CGCG	1 cut(s)	256
AciI	CCGC	2 cut(s)	254, 385
AclWI	GGATC	2 cut(s)	99, 469
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	2 cut(s)	201, 356
AfaI	GTAC	2 cut(s)	367, 376
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	110, 516
AluI	AGCT	2 cut(s)	110, 516
AlwI	GGATC	2 cut(s)	99, 469
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	397
AsuHPI	GGTGA	2 cut(s)	31, 301
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	1 cut(s)	52
BfrI	CTTAAG	1 cut(s)	446
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	513
BpmI	CTGGAG	2 cut(s)	66, 90
Bsa29I	ATCGAT	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	466
BsaJI	CCNNGG	2 cut(s)	15, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	3 cut(s)	270, 397, 508
Bse3DI	GCAATG	1 cut(s)	114
Bse8I	GATNNNNATC	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	15, 83
BseJI	GATNNNNATC	1 cut(s)	466
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	3 cut(s)	270, 397, 508
BseXI	GCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	256
BshVI	ATCGAT	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	439
Bsp143I	GATC	6 cut(s)	52, 91, 168, 309, 323, 461
BspACI	CCGC	2 cut(s)	254, 385
BspDI	ATCGAT	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	256
BspPI	GGATC	2 cut(s)	99, 469
BspTI	CTTAAG	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	3 cut(s)	270, 397, 508
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	15, 83
BssMI	GATC	6 cut(s)	52, 91, 168, 309, 323, 461
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	2 cut(s)	36, 204
BstAFI	CTTAAG	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	238, 258
BstDEI	CTNAG	2 cut(s)	420, 519
BstFNI	CGCG	1 cut(s)	256
BstKTI	GATC	6 cut(s)	55, 94, 171, 312, 326, 464
BstMBI	GATC	6 cut(s)	52, 91, 168, 309, 323, 461
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	43
Bsu15I	ATCGAT	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	238, 258
Cfr10I	RCCGGY	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	366, 375
CviAII	CATG	2 cut(s)	59, 349
CviJI	RGCY	6 cut(s)	110, 197, 236, 240, 332, 516
CviKI_1	RGCY	6 cut(s)	110, 197, 236, 240, 332, 516
CviQI	GTAC	2 cut(s)	366, 375
DdeI	CTNAG	2 cut(s)	420, 519
DpnI	GATC	6 cut(s)	54, 93, 170, 311, 325, 463
DpnII	GATC	6 cut(s)	52, 91, 168, 309, 323, 461
Eam1104I	CTCTTC	2 cut(s)	36, 204
EarI	CTCTTC	2 cut(s)	36, 204
Eco130I	CCWWGG	1 cut(s)	15
Eco57I	CTGAAG	2 cut(s)	201, 356
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	62, 352
FaiI	YATR	7 cut(s)	6, 60, 138, 287, 345, 350, 404
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	2 cut(s)	58, 348
FauI	CCCGC	1 cut(s)	261
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
GsuI	CTGGAG	2 cut(s)	66, 90
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	2 cut(s)	62, 352
HinfI	GANTC	2 cut(s)	77, 340
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	31, 301
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	3 cut(s)	336, 357, 486
Hpy188III	TCNNGA	3 cut(s)	68, 95, 275
Hpy8I	GTNNAC	1 cut(s)	368
HpyAV	CCTTC	4 cut(s)	16, 74, 82, 176
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	2 cut(s)	119, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	420, 519
Hsp92II	CATG	2 cut(s)	62, 352
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	6 cut(s)	52, 91, 168, 309, 323, 461
LpnPI	CCDG	9 cut(s)	13, 69, 96, 120, 250, 283, 288, 378, 489
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	476
MalI	GATC	6 cut(s)	54, 93, 170, 311, 325, 463
MboI	GATC	6 cut(s)	52, 91, 168, 309, 323, 461
MboII	GAAGA	3 cut(s)	53, 221, 349
MluCI	AATT	1 cut(s)	397
MnlI	CCTC	1 cut(s)	258
MroNI	GCCGGC	1 cut(s)	236
MseI	TTAA	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	116
NaeI	GCCGGC	1 cut(s)	238
NdeII	GATC	6 cut(s)	52, 91, 168, 309, 323, 461
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	62, 352
NspI	RCATGY	1 cut(s)	62
PdiI	GCCGGC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	77, 340
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
RsaI	GTAC	2 cut(s)	367, 376
RsaNI	GTAC	2 cut(s)	366, 375
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	6 cut(s)	52, 91, 168, 309, 323, 461
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	4 cut(s)	21, 27, 112, 518
SfaNI	GCATC	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	2 cut(s)	254, 385
SspI	AATATT	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	1 cut(s)	167
TasI	AATT	1 cut(s)	397
TatI	WGTACW	2 cut(s)	365, 374
TfiI	GAWTC	2 cut(s)	77, 340
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	150
Van91I	CCANNNNNTGG	1 cut(s)	503
Vha464I	CTTAAG	1 cut(s)	446
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.