Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003585

Physical Location & Seq

Genomic Coordinates Forward (+)

22969904 .. 22972630

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1226400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGCCGGAGCAAGATTTTCGATTTTTCAGGCAATAATTGCTCATGTCCCCCTGCAATTTCATGTGGGTTGGAGGTGATATCTGCGGAAATGAATTCGAAAACTCCCGCTTTATCCCAAATTCAAAGACCAAGAGGGAAGCCTGGAAACGACATGGCGTTTGGTAACTTCACTTTACAAGCGTCACCATTTAGGCGTGATCAGCCGGGACTTGCAACTTGCAAGTGCTCAAAACACACTCATCAGTCTAAAGATTTCGGCCCTCTCTCTTTTGACCAGACGACGATTCCTTGCACGTCCCTCCCTCCTTTCTTCCATCATCATATTATTATATACAATTTATGGAATATCGAATCGGAGAGAAAAAGAGAGAACCCAGAAAGCAATTTGGTCCCAGGTCCCAACTTTTTGAATAAATCCCAAAATTCAGAGCCATCCATTTCATGCTTCAAAACCCTTGAGAGCTCTCAGAAGGGGAAGGGGAAGAAGAAGAGGAAAAAAGAAATGGGGTACCCAAAGGTGAAGGTCAGGCAACAAGAAGACCAGGATGATCATCAACCCCTCACTGATTTTTGCTTTCCAGAGAAGGAGCACGAAGAGACTCCGCCCACTGTTGTGAGAATTCCTGAATCTTATGTCCCGAGTGTAGTGATACCATCAATATCTGCAACTGAAGGAGAAACGAAAGACAACAAAGTTGAAGAGGAAATCAAACAAAATATTAGAGCCACCTCAATCCCTAGGCCGCGCGCTGTCTTATCAAGTCCAGTAAATGATACAGCAATTGGAAGCAAAAACAGGATCAAAGCAGTGCGAACACCAGCTCTGAAGAATCATAACCTGGTCAAGAACAACCACACACAATCCGTTCCATCCCATACTACTGAAAATTCTAAAAAAGCAATAAAATCCAAGGGGGCTTCGGAAGGGAACTCTCTGAAGGGAAGGAAAGGGTCAGAGACAACTCTTCCAAGTCAGAGGCAACCCCCTAGAACGGGAAAACCAAGCTCTGTGGGACGTCAAGTGTCGTTTAGTTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

348

Amino Acids

38.42

Weight (kDa)

9.56

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21865
fragaria_vesca	FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630
malus_domestica	MD16G1226400.v1.1
prunus_persica	Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1
pyrus_communis	pycom16g18960
rosa_chinensis	RchiOBHm_Chr1g0362101 RchiOBHm_Chr4g0395401
rosa_laevigata	RLG00000009625
rosa_multiflora	Rmu_sc0004598.1_g000001 Rmu_sc0010817.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340360
rosa_rugosa	Rorug01G0293700 Rorug03G0357600
rosa_samantha	Rh1AG304400 Rh2BG188400 Rh4AG059600 Rh4BG058100 Rh4CG063600 Rh4DG054700 Rh6AG105300 Rh7AG389000 Rh7CG408200 Rh7DG387000
rosa_wichuraiana	Rw0G003300 Rw0G007660 Rw4G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1021
Acc65I	GGTACC	1 cut(s)	510
AccB1I	GGYRCC	1 cut(s)	510
AccII	CGCG	2 cut(s)	748, 750
AciI	CCGC	4 cut(s)	86, 108, 605, 746
AclWI	GGATC	1 cut(s)	809
AcsI	RAATTY	5 cut(s)	94, 120, 424, 621, 889
AcuI	CTGAAG	3 cut(s)	693, 848, 959
AcyI	GRCGYC	1 cut(s)	1018
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	2 cut(s)	994, 995
AgsI	TTSAA	4 cut(s)	125, 412, 451, 701
AjiI	CACGTC	1 cut(s)	297
AjnI	CCWGG	4 cut(s)	142, 394, 543, 840
AleI	CACNNNNGTG	1 cut(s)	614
AluBI	AGCT	3 cut(s)	465, 824, 1008
AluI	AGCT	3 cut(s)	465, 824, 1008
Alw21I	GWGCWC	3 cut(s)	230, 467, 594
Alw26I	GTCTC	2 cut(s)	593, 953
AlwI	GGATC	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	640
AoxI	GGCC	3 cut(s)	4, 259, 743
ApoI	RAATTY	5 cut(s)	94, 120, 424, 621, 889
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
Asp718I	GGTACC	1 cut(s)	510
AspA2I	CCTAGG	1 cut(s)	740
AspLEI	GCGC	2 cut(s)	750, 752
AspS9I	GGNCC	4 cut(s)	4, 260, 391, 398
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	88, 177, 532
AsuII	TTCGAA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	640
AvaII	GGWCC	2 cut(s)	391, 398
AvrII	CCTAGG	1 cut(s)	740
BanI	GGYRCC	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	3 cut(s)	230, 467, 594
BccI	CCATC	4 cut(s)	324, 442, 664, 880
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciT130I	CCWGG	4 cut(s)	144, 396, 545, 842
BclI	TGATCA	2 cut(s)	199, 550
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	593, 953
BfaI	CTAG	2 cut(s)	741, 990
BisI	GCNGC	1 cut(s)	746
BlnI	CCTAGG	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	747
Bme1390I	CCNGG	5 cut(s)	144, 207, 396, 545, 842
Bme18I	GGWCC	2 cut(s)	391, 398
BmeT110I	CYCGRG	1 cut(s)	640
BmgBI	CACGTC	1 cut(s)	297
BmgT120I	GGNCC	4 cut(s)	4, 260, 391, 398
BmiI	GGNNCC	3 cut(s)	393, 400, 512
BmrFI	CCNGG	5 cut(s)	144, 207, 396, 545, 842
BpiI	GAAGAC	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	1018
BsaJI	CCNNGG	3 cut(s)	394, 740, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	994, 995
Bse1I	ACTGG	1 cut(s)	767
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	4 cut(s)	144, 396, 545, 842
BseDI	CCNNGG	3 cut(s)	394, 740, 912
BseGI	GGATG	3 cut(s)	434, 553, 872
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	994, 995
BseMII	CTCAG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	767
BsePI	GCGCGC	1 cut(s)	748
Bsh1236I	CGCG	2 cut(s)	748, 750
BshFI	GGCC	3 cut(s)	6, 261, 745
BshNI	GGYRCC	1 cut(s)	510
BsiHKAI	GWGCWC	3 cut(s)	230, 467, 594
BsiHKCI	CYCGRG	1 cut(s)	640
BsiSI	CCGG	2 cut(s)	7, 206
BslFI	GGGAC	7 cut(s)	33, 222, 283, 377, 384, 623, 1029
BslI	CCNNNNNNNGG	2 cut(s)	994, 995
BsmAI	GTCTC	2 cut(s)	593, 953
BsmFI	GGGAC	7 cut(s)	33, 222, 283, 377, 384, 623, 1029
BsnI	GGCC	3 cut(s)	6, 261, 745
BsoBI	CYCGRG	1 cut(s)	640
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	230, 467, 594
Bsp143I	GATC	3 cut(s)	199, 550, 801
BspACI	CCGC	4 cut(s)	86, 108, 605, 746
BspANI	GGCC	3 cut(s)	6, 261, 745
BspCNI	CTCAG	1 cut(s)	481
BspFNI	CGCG	2 cut(s)	748, 750
BspLI	GGNNCC	3 cut(s)	393, 400, 512
BspPI	GGATC	1 cut(s)	809
BspT104I	TTCGAA	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	767
BssECI	CCNNGG	3 cut(s)	394, 740, 912
BssHII	GCGCGC	1 cut(s)	748
BssMI	GATC	3 cut(s)	199, 550, 801
BssNI	GRCGYC	1 cut(s)	1018
BssT1I	CCWWGG	2 cut(s)	740, 912
Bst2UI	CCWGG	4 cut(s)	144, 396, 545, 842
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	4 cut(s)	485, 591, 696, 972
BstACI	GRCGYC	1 cut(s)	1018
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	434, 553, 872
BstFNI	CGCG	2 cut(s)	748, 750
BstHHI	GCGC	2 cut(s)	750, 752
BstKTI	GATC	3 cut(s)	202, 553, 804
BstMAI	GTCTC	2 cut(s)	593, 953
BstMBI	GATC	3 cut(s)	199, 550, 801
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 202
BstNI	CCWGG	4 cut(s)	144, 396, 545, 842
BstSCI	CCNGG	5 cut(s)	142, 205, 394, 543, 840
BstUI	CGCG	2 cut(s)	748, 750
BstV2I	GAAGAC	1 cut(s)	546
BsuRI	GGCC	3 cut(s)	6, 261, 745
BtrI	CACGTC	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	434, 553, 872
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	3 cut(s)	564, 609, 816
Cac8I	GCNNGC	1 cut(s)	750
CfoI	GCGC	2 cut(s)	750, 752
Cfr13I	GGNCC	4 cut(s)	4, 260, 391, 398
CseI	GACGC	1 cut(s)	171
CsiI	ACCWGGT	1 cut(s)	840
Csp6I	GTAC	1 cut(s)	511
CspCI	CAANNNNNGTGG	2 cut(s)	993, 1028
CviAII	CATG	4 cut(s)	45, 63, 154, 444
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	3 cut(s)	201, 552, 803
DpnII	GATC	3 cut(s)	199, 550, 801
Eam1104I	CTCTTC	4 cut(s)	485, 591, 696, 972
EarI	CTCTTC	4 cut(s)	485, 591, 696, 972
EciI	GGCGGA	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	465
Eco130I	CCWWGG	2 cut(s)	740, 912
Eco24I	GRGCYC	1 cut(s)	467
Eco32I	GATATC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	391, 398
Eco53kI	GAGCTC	1 cut(s)	465
Eco57I	CTGAAG	3 cut(s)	693, 848, 959
Eco88I	CYCGRG	1 cut(s)	640
EcoICRI	GAGCTC	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRI	GAATTC	2 cut(s)	94, 621
EcoRII	CCWGG	4 cut(s)	142, 394, 543, 840
EcoRV	GATATC	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	740, 912
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	2 cut(s)	740, 912
FaeI	CATG	4 cut(s)	48, 66, 157, 447
FaqI	GGGAC	7 cut(s)	33, 222, 283, 377, 384, 623, 1029
FatI	CATG	4 cut(s)	44, 62, 153, 443
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	2 cut(s)	199, 550
Fnu4HI	GCNGC	1 cut(s)	746
FokI	GGATG	3 cut(s)	421, 560, 859
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	746
FspBI	CTAG	2 cut(s)	741, 990
GlaI	GCGC	2 cut(s)	749, 751
GluI	GCNGC	1 cut(s)	746
HaeIII	GGCC	3 cut(s)	6, 261, 745
HapII	CCGG	2 cut(s)	7, 206
HgaI	GACGC	1 cut(s)	171
HhaI	GCGC	2 cut(s)	750, 752
Hin1I	GRCGYC	1 cut(s)	1018
Hin1II	CATG	4 cut(s)	48, 66, 157, 447
Hin6I	GCGC	2 cut(s)	748, 750
HinP1I	GCGC	2 cut(s)	748, 750
HinfI	GANTC	5 cut(s)	286, 353, 601, 629, 832
HpaII	CCGG	2 cut(s)	7, 206
HphI	GGTGA	3 cut(s)	88, 177, 532
Hpy188I	TCNGA	8 cut(s)	358, 430, 471, 828, 925, 939, 958, 978
Hpy188III	TCNNGA	4 cut(s)	581, 626, 640, 847
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	8 cut(s)	466, 472, 517, 580, 668, 920, 934, 939
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	2 cut(s)	296, 1018
HpyCH4V	TGCA	5 cut(s)	56, 215, 222, 294, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 202
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	2 cut(s)	296, 1018
Hsp92I	GRCGYC	1 cut(s)	1018
Hsp92II	CATG	4 cut(s)	48, 66, 157, 447
HspAI	GCGC	2 cut(s)	748, 750
KpnI	GGTACC	1 cut(s)	514
Ksp22I	TGATCA	2 cut(s)	199, 550
Kzo9I	GATC	3 cut(s)	199, 550, 801
LmnI	GCTCC	2 cut(s)	9, 589
MabI	ACCWGGT	1 cut(s)	840
MaeI	CTAG	2 cut(s)	741, 990
MaeII	ACGT	2 cut(s)	296, 1018
MaeIII	GTNAC	2 cut(s)	164, 183
MalI	GATC	3 cut(s)	201, 552, 803
MboI	GATC	3 cut(s)	199, 550, 801
MboII	GAAGA	9 cut(s)	304, 496, 499, 502, 551, 608, 713, 841, 959
MfeI	CAATTG	1 cut(s)	783
MhlI	GDGCHC	3 cut(s)	230, 467, 594
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	2 cut(s)	7, 206
MspR9I	CCNGG	5 cut(s)	144, 207, 396, 545, 842
MunI	CAATTG	1 cut(s)	783
MvaI	CCWGG	4 cut(s)	144, 396, 545, 842
MvnI	CGCG	2 cut(s)	748, 750
MwoI	GCNNNNNNNGC	2 cut(s)	39, 202
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	3 cut(s)	199, 550, 801
NlaIII	CATG	4 cut(s)	48, 66, 157, 447
NlaIV	GGNNCC	3 cut(s)	393, 400, 512
NmuCI	GTSAC	1 cut(s)	183
NspV	TTCGAA	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	614
PauI	GCGCGC	1 cut(s)	748
PfeI	GAWTC	4 cut(s)	286, 353, 629, 832
PkrI	GCNGC	1 cut(s)	747
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
PpuMI	RGGWCCY	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	467
Psp5II	RGGWCCY	1 cut(s)	398
Psp6I	CCWGG	4 cut(s)	142, 394, 543, 840
PspGI	CCWGG	4 cut(s)	142, 394, 543, 840
PspN4I	GGNNCC	3 cut(s)	393, 400, 512
PspPI	GGNCC	4 cut(s)	4, 260, 391, 398
PspPPI	RGGWCCY	1 cut(s)	398
PteI	GCGCGC	1 cut(s)	748
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	467
SatI	GCNGC	1 cut(s)	746
Sau3AI	GATC	3 cut(s)	199, 550, 801
Sau96I	GGNCC	4 cut(s)	4, 260, 391, 398
SchI	GAGTC	1 cut(s)	595
ScrFI	CCNGG	5 cut(s)	144, 207, 396, 545, 842
SduI	GDGCHC	3 cut(s)	230, 467, 594
SexAI	ACCWGGT	1 cut(s)	840
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	2 cut(s)	391, 398
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SsiI	CCGC	4 cut(s)	86, 108, 605, 746
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	2 cut(s)	741, 990
SstI	GAGCTC	1 cut(s)	467
StyD4I	CCNGG	5 cut(s)	142, 205, 394, 543, 840
StyI	CCWWGG	2 cut(s)	740, 912
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	2 cut(s)	299, 1021
TaqI	TCGA	3 cut(s)	21, 98, 351
TauI	GCSGC	1 cut(s)	748
TfiI	GAWTC	4 cut(s)	286, 353, 629, 832
TscAI	CASTG	3 cut(s)	571, 616, 816
TseFI	GTSAC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	3 cut(s)	51, 107, 432
TspGWI	ACGGA	1 cut(s)	856
TspRI	CASTG	3 cut(s)	571, 616, 816
VpaK11BI	GGWCC	2 cut(s)	391, 398
XapI	RAATTY	5 cut(s)	94, 120, 424, 621, 889
XmaJI	CCTAGG	1 cut(s)	740
XspI	CTAG	2 cut(s)	741, 990
ZraI	GACGTC	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.