Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010817.1

Orthogroup ID

OG0003585

Physical Location & Seq

Genomic Coordinates Reverse (-)

33954 .. 37155

Gene Structure 3202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010817.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgagtctaaagtctctaccttcaggggcttttgacctctcccttcaacaactactgaagaacctctcaaacacaatgtacgtgtatcccaaggtgaaggtcaggcaacaagaagagaaagatgatcaatatgcccttcttgatttttctactccagtgaaggacaaagatgtttctccagctactgttgcaaaagctccaaaatcttatgttccaagagtagttatgccatcgatctctgttgctgaaggagcaaagaaggccaataagattgaagagatgaataaacaaaatattagagccagctcaatccctccacctcgtgctgtcttatccagtcctgacaatgatacggtgattggaaacaaaaataggatcaaagcacaacgaccatctgctctgaagaatcatagcttggttcagaatagaagattgaagtttggtgacaatcctgatacgggattgagaggcaatagtggtccaaaactagacaatatgcaggtctctgctcacatcagtgccaaagcacaaccttatgctccaagacatagaacagataagattccatctgactggagcagtggagcagacaagcacaaagcaagacaaggaggagcctttgaattgtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.15

Weight (kDa)

9.93

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21865
fragaria_vesca	FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630
malus_domestica	MD16G1226400.v1.1
prunus_persica	Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1
pyrus_communis	pycom16g18960
rosa_chinensis	RchiOBHm_Chr1g0362101 RchiOBHm_Chr4g0395401
rosa_laevigata	RLG00000009625
rosa_multiflora	Rmu_sc0004598.1_g000001 Rmu_sc0010817.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340360
rosa_rugosa	Rorug01G0293700 Rorug03G0357600
rosa_samantha	Rh1AG304400 Rh2BG188400 Rh4AG059600 Rh4BG058100 Rh4CG063600 Rh4DG054700 Rh6AG105300 Rh7AG389000 Rh7CG408200 Rh7DG387000
rosa_wichuraiana	Rw0G003300 Rw0G007660 Rw4G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	490
AclWI	GGATC	1 cut(s)	383
AcuI	CTGAAG	4 cut(s)	6, 77, 267, 422
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	80, 629
AfiI	CCNNNNNNNGG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	4 cut(s)	47, 275, 436, 623
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AleI	CACNNNNGTG	1 cut(s)	516
AluBI	AGCT	4 cut(s)	182, 197, 306, 414
AluI	AGCT	4 cut(s)	182, 197, 306, 414
Alw26I	GTCTC	2 cut(s)	18, 508
AlwI	GGATC	1 cut(s)	383
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	3 cut(s)	106, 367, 455
AvaII	GGWCC	1 cut(s)	479
BauI	CACGAG	1 cut(s)	321
BccI	CCATC	3 cut(s)	238, 400, 574
BciVI	GTATCC	1 cut(s)	96
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	18, 508
BfaI	CTAG	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	490
BfuI	GTATCC	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	616
BpmI	CTGGAG	3 cut(s)	138, 162, 595
Bsa29I	ATCGAT	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	3 cut(s)	155, 336, 578
BseCI	ATCGAT	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseNI	ACTGG	3 cut(s)	155, 336, 578
BseRI	GAGGAG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	2 cut(s)	18, 508
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	508
Bsp143I	GATC	3 cut(s)	124, 234, 375
BspANI	GGCC	1 cut(s)	263
BspDI	ATCGAT	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	508
BsrI	ACTGG	3 cut(s)	155, 336, 578
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	3 cut(s)	124, 234, 375
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	187, 355
Bst6I	CTCTTC	2 cut(s)	108, 270
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	304
BstKTI	GATC	3 cut(s)	127, 237, 378
BstMAI	GTCTC	2 cut(s)	18, 508
BstMBI	GATC	3 cut(s)	124, 234, 375
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 251, 260
BstXI	CCANNNNNNTGG	1 cut(s)	573
Bsu15I	ATCGAT	1 cut(s)	233
BsuI	GTATCC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	3 cut(s)	162, 523, 586
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	304
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	479
ClaI	ATCGAT	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	79, 628
CviJI	RGCY	8 cut(s)	29, 182, 197, 263, 302, 306, 414, 617
CviKI_1	RGCY	8 cut(s)	29, 182, 197, 263, 302, 306, 414, 617
CviQI	GTAC	2 cut(s)	79, 628
DpnI	GATC	3 cut(s)	126, 236, 377
DpnII	GATC	3 cut(s)	124, 234, 375
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	2 cut(s)	108, 270
EarI	CTCTTC	2 cut(s)	108, 270
Eco130I	CCWWGG	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	4 cut(s)	6, 77, 267, 422
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaiI	YATR	7 cut(s)	132, 210, 227, 411, 497, 537, 549
FbaI	TGATCA	1 cut(s)	124
FspBI	CTAG	1 cut(s)	488
GsuI	CTGGAG	3 cut(s)	138, 162, 595
HaeIII	GGCC	1 cut(s)	263
HinfI	GANTC	3 cut(s)	4, 406, 562
HphI	GGTGA	3 cut(s)	106, 367, 455
Hpy188I	TCNGA	3 cut(s)	402, 423, 571
Hpy188III	TCNNGA	3 cut(s)	140, 341, 452
HpyAV	CCTTC	7 cut(s)	30, 53, 91, 146, 154, 242, 253
HpyCH4III	ACNGT	2 cut(s)	187, 355
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	191, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 251, 260
HpySE526I	ACGT	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	124, 234, 375
LmnI	GCTCC	6 cut(s)	202, 251, 544, 576, 584, 614
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	3 cut(s)	126, 236, 377
MboI	GATC	3 cut(s)	124, 234, 375
MboII	GAAGA	5 cut(s)	70, 125, 287, 415, 441
MluCI	AATT	1 cut(s)	623
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	6 cut(s)	47, 74, 324, 330, 461, 605
MslI	CAYNNNNRTG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	188, 251, 260
NdeII	GATC	3 cut(s)	124, 234, 375
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	1 cut(s)	443
OliI	CACNNNNGTG	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	406, 562
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	185
RsaI	GTAC	2 cut(s)	80, 629
RsaNI	GTAC	2 cut(s)	79, 628
RseI	CAYNNNNRTG	1 cut(s)	516
Sau3AI	GATC	3 cut(s)	124, 234, 375
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	13
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	516
Sse9I	AATT	1 cut(s)	623
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	187, 355
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	623
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	2 cut(s)	406, 562
TscAI	CASTG	3 cut(s)	162, 523, 586
TseFI	GTSAC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	3 cut(s)	162, 523, 586
VpaK11BI	GGWCC	1 cut(s)	479
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.