Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003585

Physical Location & Seq

Genomic Coordinates Forward (+)

44459560 .. 44462767

Gene Structure 3208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0357600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTTGCATGTGCCTCAAGTTCAACGTAAAGTGGATGTTCTTAAGATCTTGCACTTCCTTTGCACACCTGTAGTTAATATTGCGAGTCAGGAGGCGTCTGGTGCTATTGAAGCATATCACGTAGAGTTGAAAGTGAAATTGTTTGATGATTCACATCTTGGAGCACCCCAAAGAGTTGATTCGTTAGTACACAAGTTGACAACAAAGCTGCACTTAGGCTACTGGCTGGATCGATATGCTGATAAATGTGATTCTTTTCAAAACGTCAGTGAAGAATGTATTGCTTCTAAGTTTTGGCACAGGGCACTGCAAATTTCTGATCCTGCTGTTACCTTGGATTATAAAAGCCATCTCTTTGCCAAGACTTGCAAACCGCATGTGTCCACTAGGCAACAGTATTTTGGAGGTCTTGTTAATGAGTATGAGGAGCACTTTGAAGAGATTAAAGCTTCAGGGATATTGTCCAACGTCATGTGCTATTGCATGATGCTTCTTGTTTATGCAAAGATTGACAGGTGGGATGTTGCCGCTAGGTTGCTGAATGAGATGCTCACAAATAGGGTATCAAATATTCATCAAGTGATGAAGCAGATGATCAAGGGAGACTATGATGGCAACTCTAACTGGCAGATGGTGGAAGGTTCGAATAGGTTGATAGTGGTGAAGTACAACCATGTTAAATCGACTGCTAGTCTAGAAATGAAGAATGGACTTGATCGTGTGCACATGGAAGTGAACAAAGGAATTCAATTGGAAAAAGGGTTGTTGGAAGAATTGTCGAGTCATTTACTGGGGATCGGAAGTGCCCTAGATGCTGAAGTGCTTGCGTTCCTTGAGGCTATGAAGGTTGCCAAACTAAGTCCCCTGGAGGCTGCGTACCAAGTGGTTGAATGGCATCGCAGCTGTGTAGCAATTGAACATAAGGGTTACACATATCTTTCACGAAGGAAACATTCCCGCGGACGTACTAGCAAACTTTGGCGCGGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

37.7

Weight (kDa)

8.54

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21865
fragaria_vesca	FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630
malus_domestica	MD16G1226400.v1.1
prunus_persica	Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1
pyrus_communis	pycom16g18960
rosa_chinensis	RchiOBHm_Chr1g0362101 RchiOBHm_Chr4g0395401
rosa_laevigata	RLG00000009625
rosa_multiflora	Rmu_sc0004598.1_g000001 Rmu_sc0010817.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340360
rosa_rugosa	Rorug01G0293700 Rorug03G0357600
rosa_samantha	Rh1AG304400 Rh2BG188400 Rh4AG059600 Rh4BG058100 Rh4CG063600 Rh4DG054700 Rh6AG105300 Rh7AG389000 Rh7CG408200 Rh7DG387000
rosa_wichuraiana	Rw0G003300 Rw0G007660 Rw4G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
AccII	CGCG	2 cut(s)	960, 984
AciI	CCGC	5 cut(s)	374, 528, 958, 960, 984
AclWI	GGATC	3 cut(s)	237, 314, 803
AcsI	RAATTY	2 cut(s)	312, 744
AcuI	CTGAAG	2 cut(s)	435, 837
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	4 cut(s)	189, 668, 878, 967
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	8 cut(s)	23, 110, 130, 260, 437, 749, 890, 917
AhdI	GACNNNNNGTC	1 cut(s)	690
AjnI	CCWGG	1 cut(s)	864
AluBI	AGCT	3 cut(s)	208, 449, 903
AluI	AGCT	3 cut(s)	208, 449, 903
Alw21I	GWGCWC	3 cut(s)	166, 432, 726
Alw26I	GTCTC	1 cut(s)	597
Alw44I	GTGCAC	1 cut(s)	722
AlwI	GGATC	3 cut(s)	237, 314, 803
ApaLI	GTGCAC	1 cut(s)	722
ApeKI	GCWGC	3 cut(s)	208, 872, 900
ApoI	RAATTY	2 cut(s)	312, 744
AspLEI	GCGC	1 cut(s)	984
AsuHPI	GGTGA	1 cut(s)	673
AsuII	TTCGAA	1 cut(s)	644
BaeGI	GKGCMC	3 cut(s)	307, 726, 808
Bbv12I	GWGCWC	3 cut(s)	166, 432, 726
BbvI	GCAGC	3 cut(s)	195, 859, 912
BccI	CCATC	3 cut(s)	357, 605, 625
BciT130I	CCWGG	1 cut(s)	866
BclI	TGATCA	1 cut(s)	594
BcoDI	GTCTC	1 cut(s)	597
BfaI	CTAG	6 cut(s)	387, 531, 690, 695, 809, 969
BfmI	CTRYAG	1 cut(s)	69
BfrI	CTTAAG	1 cut(s)	41
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	5 cut(s)	209, 528, 873, 901, 985
BlsI	GCNGC	5 cut(s)	210, 529, 874, 902, 986
Bme1390I	CCNGG	1 cut(s)	866
BmeRI	GACNNNNNGTC	1 cut(s)	690
BmrFI	CCNGG	1 cut(s)	866
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	4 cut(s)	477, 537, 802, 904
BmuI	ACTGGG	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	887
Bpu14I	TTCGAA	1 cut(s)	644
BpuEI	CTTGAG	1 cut(s)	854
Bsa29I	ATCGAT	1 cut(s)	232
BsaAI	YACGTR	1 cut(s)	121
BsaBI	GATNNNNATC	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	333, 864, 958
BsaXI	ACNNNNNCTCC	4 cut(s)	396, 426, 860, 890
Bse1I	ACTGG	3 cut(s)	227, 629, 795
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	866
BseCI	ATCGAT	1 cut(s)	232
BseDI	CCNNGG	3 cut(s)	333, 864, 958
BseGI	GGATG	2 cut(s)	40, 526
BseJI	GATNNNNATC	1 cut(s)	153
BseNI	ACTGG	3 cut(s)	227, 629, 795
BseRI	GAGGAG	1 cut(s)	440
BseSI	GKGCMC	3 cut(s)	307, 726, 808
BseXI	GCAGC	3 cut(s)	195, 859, 912
BsgI	GTGCAG	1 cut(s)	194
Bsh1236I	CGCG	2 cut(s)	960, 984
BshVI	ATCGAT	1 cut(s)	232
BsiHKAI	GWGCWC	3 cut(s)	166, 432, 726
BslFI	GGGAC	1 cut(s)	846
BsmAI	GTCTC	1 cut(s)	597
BsmFI	GGGAC	1 cut(s)	846
Bsp119I	TTCGAA	1 cut(s)	644
Bsp1286I	GDGCHC	5 cut(s)	166, 307, 432, 726, 808
Bsp143I	GATC	6 cut(s)	45, 229, 319, 594, 715, 795
BspACI	CCGC	5 cut(s)	374, 528, 958, 960, 984
BspDI	ATCGAT	1 cut(s)	232
BspFNI	CGCG	2 cut(s)	960, 984
BspPI	GGATC	3 cut(s)	237, 314, 803
BspT104I	TTCGAA	1 cut(s)	644
BspTI	CTTAAG	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	227, 629, 795
BssECI	CCNNGG	3 cut(s)	333, 864, 958
BssMI	GATC	6 cut(s)	45, 229, 319, 594, 715, 795
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	866
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	41
BstBAI	YACGTR	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	825
BstDEI	CTNAG	3 cut(s)	214, 288, 857
BstDSI	CCRYGG	1 cut(s)	958
BstF5I	GGATG	2 cut(s)	40, 526
BstFNI	CGCG	2 cut(s)	960, 984
BstHHI	GCGC	1 cut(s)	984
BstKTI	GATC	6 cut(s)	48, 232, 322, 597, 718, 798
BstMAI	GTCTC	1 cut(s)	597
BstMBI	GATC	6 cut(s)	45, 229, 319, 594, 715, 795
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 110, 812
BstNI	CCWGG	1 cut(s)	866
BstNSI	RCATGY	2 cut(s)	11, 380
BstSCI	CCNGG	1 cut(s)	864
BstSFI	CTRYAG	1 cut(s)	69
BstSLI	GKGCMC	3 cut(s)	307, 726, 808
BstUI	CGCG	2 cut(s)	960, 984
BstV1I	GCAGC	3 cut(s)	195, 859, 912
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
Bsu15I	ATCGAT	1 cut(s)	232
BsuTUI	ATCGAT	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	958
BtgZI	GCGATG	1 cut(s)	881
BtsCI	GGATG	2 cut(s)	40, 526
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	274, 305
Cac8I	GCNNGC	1 cut(s)	825
CfoI	GCGC	1 cut(s)	984
Cfr42I	CCGCGG	1 cut(s)	961
ClaI	ATCGAT	1 cut(s)	232
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	4 cut(s)	188, 667, 877, 966
CviAII	CATG	6 cut(s)	8, 377, 472, 484, 674, 727
CviJI	RGCY	9 cut(s)	208, 219, 226, 348, 449, 839, 872, 903, 987
CviKI_1	RGCY	9 cut(s)	208, 219, 226, 348, 449, 839, 872, 903, 987
CviQI	GTAC	4 cut(s)	188, 667, 877, 966
DdeI	CTNAG	3 cut(s)	214, 288, 857
DpnI	GATC	6 cut(s)	47, 231, 321, 596, 717, 797
DpnII	GATC	6 cut(s)	45, 229, 319, 594, 715, 795
DriI	GACNNNNNGTC	1 cut(s)	690
Eam1104I	CTCTTC	1 cut(s)	432
Eam1105I	GACNNNNNGTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	333
Eco57I	CTGAAG	2 cut(s)	435, 837
EcoRI	GAATTC	1 cut(s)	744
EcoRII	CCWGG	1 cut(s)	864
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	6 cut(s)	11, 380, 475, 487, 677, 730
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	1 cut(s)	846
FatI	CATG	6 cut(s)	7, 376, 471, 483, 673, 726
FauI	CCCGC	1 cut(s)	965
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	5 cut(s)	209, 528, 873, 901, 985
FokI	GGATG	2 cut(s)	47, 533
Fsp4HI	GCNGC	5 cut(s)	209, 528, 873, 901, 985
FspBI	CTAG	6 cut(s)	387, 531, 690, 695, 809, 969
GlaI	GCGC	1 cut(s)	983
GluI	GCNGC	5 cut(s)	209, 528, 873, 901, 985
GsuI	CTGGAG	1 cut(s)	887
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	984
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	6 cut(s)	11, 380, 475, 487, 677, 730
Hin6I	GCGC	1 cut(s)	982
HinP1I	GCGC	1 cut(s)	982
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	5 cut(s)	85, 149, 179, 251, 781
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	5 cut(s)	190, 198, 384, 724, 736
Hpy188I	TCNGA	2 cut(s)	319, 800
Hpy188III	TCNNGA	3 cut(s)	89, 695, 942
Hpy8I	GTNNAC	5 cut(s)	190, 198, 384, 724, 736
HpyAV	CCTTC	3 cut(s)	632, 838, 939
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	5 cut(s)	25, 120, 264, 468, 964
HpyCH4V	TGCA	9 cut(s)	7, 52, 63, 211, 310, 369, 483, 503, 724
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 110, 812
HpyF3I	CTNAG	3 cut(s)	214, 288, 857
HpySE526I	ACGT	5 cut(s)	25, 120, 264, 468, 964
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	6 cut(s)	11, 380, 475, 487, 677, 730
HspAI	GCGC	1 cut(s)	982
Ksp22I	TGATCA	1 cut(s)	594
KspI	CCGCGG	1 cut(s)	961
Kzo9I	GATC	6 cut(s)	45, 229, 319, 594, 715, 795
LmnI	GCTCC	2 cut(s)	161, 427
Lsp1109I	GCAGC	3 cut(s)	195, 859, 912
LweI	GCATC	4 cut(s)	477, 537, 802, 904
MaeI	CTAG	6 cut(s)	387, 531, 690, 695, 809, 969
MaeII	ACGT	5 cut(s)	25, 120, 264, 468, 964
MaeIII	GTNAC	2 cut(s)	328, 926
MalI	GATC	6 cut(s)	47, 231, 321, 596, 717, 797
MboI	GATC	6 cut(s)	45, 229, 319, 594, 715, 795
MboII	GAAGA	4 cut(s)	284, 449, 715, 782
MfeI	CAATTG	2 cut(s)	749, 912
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	5 cut(s)	166, 307, 432, 726, 808
MluCI	AATT	6 cut(s)	137, 312, 744, 749, 773, 912
MlyI	GAGTC	2 cut(s)	94, 790
MmeI	TCCRAC	2 cut(s)	489, 747
MnlI	CCTC	6 cut(s)	24, 85, 398, 418, 829, 862
MseI	TTAA	5 cut(s)	42, 75, 414, 444, 678
MslI	CAYNNNNRTG	1 cut(s)	731
MspA1I	CMGCKG	2 cut(s)	903, 960
MspCI	CTTAAG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	866
MunI	CAATTG	2 cut(s)	749, 912
MvaI	CCWGG	1 cut(s)	866
MvnI	CGCG	2 cut(s)	960, 984
MwoI	GCNNNNNNNGC	3 cut(s)	101, 110, 812
NdeII	GATC	6 cut(s)	45, 229, 319, 594, 715, 795
NlaIII	CATG	6 cut(s)	11, 380, 475, 487, 677, 730
NspI	RCATGY	2 cut(s)	11, 380
NspV	TTCGAA	1 cut(s)	644
PfeI	GAWTC	3 cut(s)	149, 179, 251
PkrI	GCNGC	5 cut(s)	210, 529, 874, 902, 986
PleI	GAGTC	2 cut(s)	93, 789
PpsI	GAGTC	2 cut(s)	93, 789
Ppu21I	YACGTR	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	864
PspGI	CCWGG	1 cut(s)	864
PsuI	RGATCY	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	903
RsaI	GTAC	4 cut(s)	189, 668, 878, 967
RsaNI	GTAC	4 cut(s)	188, 667, 877, 966
RseI	CAYNNNNRTG	1 cut(s)	731
SacII	CCGCGG	1 cut(s)	961
SaqAI	TTAA	5 cut(s)	42, 75, 414, 444, 678
SatI	GCNGC	5 cut(s)	209, 528, 873, 901, 985
Sau3AI	GATC	6 cut(s)	45, 229, 319, 594, 715, 795
SchI	GAGTC	2 cut(s)	94, 790
ScrFI	CCNGG	1 cut(s)	866
SduI	GDGCHC	5 cut(s)	166, 307, 432, 726, 808
SfaNI	GCATC	4 cut(s)	477, 537, 802, 904
SfcI	CTRYAG	1 cut(s)	69
Sfr303I	CCGCGG	1 cut(s)	961
SfuI	TTCGAA	1 cut(s)	644
SgrBI	CCGCGG	1 cut(s)	961
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	3 cut(s)	15, 41, 833
SmoI	CTYRAG	3 cut(s)	15, 41, 833
Sse9I	AATT	6 cut(s)	137, 312, 744, 749, 773, 912
SsiI	CCGC	5 cut(s)	374, 528, 958, 960, 984
SspI	AATATT	2 cut(s)	79, 571
SspMI	CTAG	6 cut(s)	387, 531, 690, 695, 809, 969
StyD4I	CCNGG	1 cut(s)	864
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	5 cut(s)	28, 123, 267, 471, 967
TaqI	TCGA	4 cut(s)	232, 644, 683, 779
TasI	AATT	6 cut(s)	137, 312, 744, 749, 773, 912
TatI	WGTACW	2 cut(s)	187, 666
TauI	GCSGC	2 cut(s)	530, 987
TfiI	GAWTC	3 cut(s)	149, 179, 251
Tru1I	TTAA	5 cut(s)	42, 75, 414, 444, 678
Tru9I	TTAA	5 cut(s)	42, 75, 414, 444, 678
TscAI	CASTG	2 cut(s)	274, 312
TseI	GCWGC	3 cut(s)	208, 872, 900
TspDTI	ATGAA	4 cut(s)	563, 599, 716, 857
TspRI	CASTG	2 cut(s)	274, 312
Vha464I	CTTAAG	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	722
XapI	RAATTY	2 cut(s)	312, 744
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	2 cut(s)	11, 380
XspI	CTAG	6 cut(s)	387, 531, 690, 695, 809, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.