Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003585

Physical Location & Seq

Genomic Coordinates Forward (+)

40948002 .. 40950236

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0293700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGTTAGGCGGTTGATTCAAGCAATTGATGAGATGACCCTCTGCAGCCGTGGCTTGAATTGTATAGGATGGAGTTTCTCCAGTGAGAGTACTTATCTTAGAATGAATATATGTAAGCAACAAAGTGAAACGCCGGATGCAATATCAAGGTCTGATGTTTGGCTTCGTGCCTATGAAGCAAAGCAGAAGAAGGGGTCAACTGAGGAAGCTGTGGATTCAGAAATAGTGAAACAAGTGAAAAAGTACAAGGAAGAAGAAGAAACAGTTTCTGGACTGTCTTCTATAAAGAATGATGTTGTTGCAAAAGTGCTTGGTCCAGATCCACGAGGACGAGTAAGAGGGTATGGGTTCGGTGCACTACCTTCAAAAGTCAATGCTCAATCACATGTAAGTAATAAAGTCACAATGTTAGAGAATGCTCTTGCTGCTCAAACACAAGTGGTAGACAAATTGCAAGAGATGGTGAGAGGCCTTTGTGCTCGGCTAGACCAAGGAGGAAATAACAATGAACACACTATTGCACAACAATCTGCTACTGAGATTGGAAATAGAAAACGTAAAGAAAATCCAAGTGTTACAAATACTGGTAGTAATATAGCACAGAGCAAACAGAAAGATGCAAGTGTTAGAAGTTCTTATAATGAGACAGAAAATGGCAGCCCAATGCATCAAAGTTTTAATGGAAAGAAACAACTTTCTGGACAAGTTAACCCAAAAATAGTCCACAAGACAGATTTGGGGAAACAAGTGCAGTTGTTAAGTTGGTTTGCTAAAGAAGAAGTAGTTGTTGCATGTGCTAGCATTATATCAAAAGATCCACAAGTTGAGGTGCATCATGTTCCTCTTGGCCATGATTGTTGGAAAGTATCGGTGCATGAAGTTTTTCATGATATAGCCTTGTATCGCCCAACAAGAGAGTTTAGTAAACTGTATGCATCCATAGGAAGTATGATTGCATGGCCTATCAAGTACATCAAAGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

36.51

Weight (kDa)

9.07

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	42 - 118	2.5e-06	Plant transposase (Ptta/En/Spm family)
DUF8039	PF26133	256 - 327	1.9e-09	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21865
fragaria_vesca	FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630
malus_domestica	MD16G1226400.v1.1
prunus_persica	Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1
pyrus_communis	pycom16g18960
rosa_chinensis	RchiOBHm_Chr1g0362101 RchiOBHm_Chr4g0395401
rosa_laevigata	RLG00000009625
rosa_multiflora	Rmu_sc0004598.1_g000001 Rmu_sc0010817.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340360
rosa_rugosa	Rorug01G0293700 Rorug03G0357600
rosa_samantha	Rh1AG304400 Rh2BG188400 Rh4AG059600 Rh4BG058100 Rh4CG063600 Rh4DG054700 Rh6AG105300 Rh7AG389000 Rh7CG408200 Rh7DG387000
rosa_wichuraiana	Rw0G003300 Rw0G007660 Rw4G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	639
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	2 cut(s)	314, 809
AcoI	YGGCCR	1 cut(s)	847
AfaI	GTAC	3 cut(s)	91, 245, 971
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	20, 58, 366
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw21I	GWGCWC	2 cut(s)	358, 481
Alw26I	GTCTC	1 cut(s)	638
Alw44I	GTGCAC	1 cut(s)	354
AlwI	GGATC	2 cut(s)	314, 809
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	3 cut(s)	469, 847, 959
ApaLI	GTGCAC	1 cut(s)	354
ApeKI	GCWGC	3 cut(s)	45, 425, 657
Asp700I	GAANNNNTTC	1 cut(s)	882
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	475
AsuNHI	GCTAGC	1 cut(s)	797
AvaII	GGWCC	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	849
BauI	CACGAG	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	358, 481
BbvI	GCAGC	3 cut(s)	57, 412, 669
BccI	CCATC	2 cut(s)	63, 454
BceAI	ACGGC	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	638
BfaI	CTAG	2 cut(s)	485, 798
BfmI	CTRYAG	1 cut(s)	43
BisI	GCNGC	3 cut(s)	46, 426, 658
BlsI	GCNGC	3 cut(s)	47, 427, 659
BmcAI	AGTACT	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmsI	GCATC	5 cut(s)	127, 607, 676, 841, 944
BmtI	GCTAGC	1 cut(s)	801
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	49, 490
Bse1I	ACTGG	2 cut(s)	81, 589
BseDI	CCNNGG	2 cut(s)	49, 490
BseGI	GGATG	3 cut(s)	74, 142, 935
BseMII	CTCAG	2 cut(s)	192, 528
BseNI	ACTGG	2 cut(s)	81, 589
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	3 cut(s)	57, 412, 669
BsgI	GTGCAG	1 cut(s)	770
BshFI	GGCC	3 cut(s)	471, 849, 961
BsiHKAI	GWGCWC	2 cut(s)	358, 481
BsiSI	CCGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	638
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	471, 849, 961
Bsp1286I	GDGCHC	2 cut(s)	358, 481
Bsp143I	GATC	2 cut(s)	319, 814
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	3 cut(s)	471, 849, 961
BspCNI	CTCAG	2 cut(s)	193, 529
BspHI	TCATGA	1 cut(s)	886
BspMAI	CTGCAG	1 cut(s)	47
BspOI	GCTAGC	1 cut(s)	801
BspPI	GGATC	2 cut(s)	314, 809
BsrI	ACTGG	2 cut(s)	81, 589
BssECI	CCNNGG	2 cut(s)	49, 490
BssMI	GATC	2 cut(s)	319, 814
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	490
Bst2BI	CACGAG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	265, 276, 930
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	3 cut(s)	98, 201, 537
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	3 cut(s)	74, 142, 935
BstKTI	GATC	2 cut(s)	322, 817
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	2 cut(s)	319, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 176, 425
BstNSI	RCATGY	2 cut(s)	389, 795
BstSFI	CTRYAG	1 cut(s)	43
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	3 cut(s)	57, 412, 669
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	2 cut(s)	319, 814
BstYI	RGATCY	2 cut(s)	319, 814
BsuRI	GGCC	3 cut(s)	471, 849, 961
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	3 cut(s)	74, 142, 935
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	799
CaiI	CAGNNNCTG	1 cut(s)	269
CciI	TCATGA	1 cut(s)	886
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	3 cut(s)	90, 244, 970
CviAII	CATG	7 cut(s)	386, 792, 836, 851, 875, 887, 957
CviQI	GTAC	3 cut(s)	90, 244, 970
DdeI	CTNAG	3 cut(s)	98, 201, 537
DpnI	GATC	2 cut(s)	321, 816
DpnII	GATC	2 cut(s)	319, 814
EaeI	YGGCCR	1 cut(s)	847
Eco130I	CCWWGG	1 cut(s)	490
Eco147I	AGGCCT	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	490
EcoT22I	ATGCAT	2 cut(s)	669, 937
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	7 cut(s)	389, 795, 839, 854, 878, 890, 960
FatI	CATG	7 cut(s)	385, 791, 835, 850, 874, 886, 956
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	3 cut(s)	46, 426, 658
FokI	GGATG	3 cut(s)	81, 149, 922
Fsp4HI	GCNGC	3 cut(s)	46, 426, 658
FspBI	CTAG	2 cut(s)	485, 798
GluI	GCNGC	3 cut(s)	46, 426, 658
GsuI	CTGGAG	1 cut(s)	64
HaeIII	GGCC	3 cut(s)	471, 849, 961
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	7 cut(s)	389, 795, 839, 854, 878, 890, 960
HincII	GTYRAC	2 cut(s)	198, 709
HindII	GTYRAC	2 cut(s)	198, 709
HinfI	GANTC	2 cut(s)	16, 215
HpaI	GTTAAC	1 cut(s)	709
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	6 cut(s)	198, 356, 445, 709, 724, 926
Hpy188I	TCNGA	2 cut(s)	154, 220
Hpy188III	TCNNGA	4 cut(s)	270, 317, 699, 887
Hpy8I	GTNNAC	6 cut(s)	198, 356, 445, 709, 724, 926
HpyAV	CCTTC	2 cut(s)	184, 372
HpyCH4III	ACNGT	3 cut(s)	265, 276, 930
HpyCH4IV	ACGT	1 cut(s)	556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 176, 425
HpyF3I	CTNAG	3 cut(s)	98, 201, 537
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	7 cut(s)	389, 795, 839, 854, 878, 890, 960
KspAI	GTTAAC	1 cut(s)	709
Kzo9I	GATC	2 cut(s)	319, 814
LpnPI	CCDG	6 cut(s)	94, 147, 255, 330, 570, 684
Lsp1109I	GCAGC	3 cut(s)	57, 412, 669
LweI	GCATC	5 cut(s)	127, 607, 676, 841, 944
MaeI	CTAG	2 cut(s)	485, 798
MaeII	ACGT	1 cut(s)	556
MaeIII	GTNAC	2 cut(s)	400, 574
MalI	GATC	2 cut(s)	321, 816
MboI	GATC	2 cut(s)	319, 814
MboII	GAAGA	6 cut(s)	199, 263, 266, 269, 270, 788
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	2 cut(s)	319, 814
MhlI	GDGCHC	2 cut(s)	358, 481
MlsI	TGGCCA	1 cut(s)	849
MluCI	AATT	4 cut(s)	24, 58, 449, 982
MluNI	TGGCCA	1 cut(s)	849
MmeI	TCCRAC	1 cut(s)	839
MnlI	CCTC	8 cut(s)	50, 196, 320, 332, 461, 488, 820, 852
Mox20I	TGGCCA	1 cut(s)	849
Mph1103I	ATGCAT	2 cut(s)	669, 937
MroXI	GAANNNNTTC	1 cut(s)	882
MscI	TGGCCA	1 cut(s)	849
MseI	TTAA	3 cut(s)	678, 708, 758
MslI	CAYNNNNRTG	1 cut(s)	977
Msp20I	TGGCCA	1 cut(s)	849
MspI	CCGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	421
MwoI	GCNNNNNNNGC	3 cut(s)	51, 176, 425
NdeII	GATC	2 cut(s)	319, 814
NheI	GCTAGC	1 cut(s)	797
NlaIII	CATG	7 cut(s)	389, 795, 839, 854, 878, 890, 960
NmeAIII	GCCGAG	1 cut(s)	460
NmuCI	GTSAC	1 cut(s)	400
NsiI	ATGCAT	2 cut(s)	669, 937
NspI	RCATGY	2 cut(s)	389, 795
PagI	TCATGA	1 cut(s)	886
PceI	AGGCCT	1 cut(s)	471
PciI	ACATGT	1 cut(s)	385
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	882
PfeI	GAWTC	2 cut(s)	16, 215
PkrI	GCNGC	3 cut(s)	47, 427, 659
PscI	ACATGT	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	639
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	319, 814
RsaI	GTAC	3 cut(s)	91, 245, 971
RsaNI	GTAC	3 cut(s)	90, 244, 970
RseI	CAYNNNNRTG	1 cut(s)	977
SaqAI	TTAA	3 cut(s)	678, 708, 758
SatI	GCNGC	3 cut(s)	46, 426, 658
Sau3AI	GATC	2 cut(s)	319, 814
Sau96I	GGNCC	1 cut(s)	314
ScaI	AGTACT	1 cut(s)	91
SduI	GDGCHC	2 cut(s)	358, 481
SetI	ASST	5 cut(s)	152, 211, 364, 559, 831
SfaNI	GCATC	5 cut(s)	127, 607, 676, 841, 944
SfcI	CTRYAG	1 cut(s)	43
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	977
Sse9I	AATT	4 cut(s)	24, 58, 449, 982
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	2 cut(s)	485, 798
StuI	AGGCCT	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	3 cut(s)	265, 276, 930
TaiI	ACGT	1 cut(s)	559
TasI	AATT	4 cut(s)	24, 58, 449, 982
TatI	WGTACW	3 cut(s)	89, 243, 969
TfiI	GAWTC	2 cut(s)	16, 215
Tru1I	TTAA	3 cut(s)	678, 708, 758
Tru9I	TTAA	3 cut(s)	678, 708, 758
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	3 cut(s)	45, 425, 657
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	5 cut(s)	119, 189, 522, 875, 891
TspRI	CASTG	1 cut(s)	88
VneI	GTGCAC	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	314
XceI	RCATGY	2 cut(s)	389, 795
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	882
XspI	CTAG	2 cut(s)	485, 798
ZrmI	AGTACT	1 cut(s)	91
Zsp2I	ATGCAT	2 cut(s)	669, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.