Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003585

Physical Location & Seq

Genomic Coordinates Forward (+)

8501407 .. 8507043

Gene Structure 5637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG054700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGATTTTTAGGCTCCCTCTGGCTTTGGATGGCCTACCTCTCTGTGCGCAATGCAGAGAGCCAAAGGGCAAAGCGACTAGAGAATCAAACAGAACCCATAAAGCAATCTGCTCCCAACTTTTTGAACAACCCCAAATTCAGAGCCTTTCATTTCAGCTCCCTTCAACAACTACTGAAGAAGCTCTCAAACACAATGTATGTGTATCCCAAGGTGAAGGTCAGGCAACAAGAAGAGAAAGATGATCAACATGCCCTTCTTGATTTTTCTACTCCAGTGAAGGAAAAAGATGTTTCTCCAGCTACTGTTGCAAAAGTTCCAAAATCTTATGTTCCAAGAGTAGTTATGCCATCGATCTCTGTTGCTGAAGGAGCAAAGAAGGCCAATAAGATTGAAGAGATGAATAAACAAAATATTAGAGCCAGCTCAATCCCTCCACCTCGTGCTGTCTTATCCAGTCCTGACAATGATACGGTGATTGGAAACAAAAATAGGATCAAAGCACAACGACCATCTGCTCTGAAGAATCATAGCTTGGTTCAGAATAGAAGTACACCATGTATTCCACTCCACATTACTGAAAACTCCATAAATACAAAAAAATCCAAGGGGACTTTAGTTGAGAACTGTCTTAAGGAAAGGAAAGGATCAGCATCAAAACTAACAAGTCAGATACGGCCATCAAGAACTGGGAAATCAAGCTCTAAGGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.68

Weight (kDa)

10.22

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21865
fragaria_vesca	FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630
malus_domestica	MD16G1226400.v1.1
prunus_persica	Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1
pyrus_communis	pycom16g18960
rosa_chinensis	RchiOBHm_Chr1g0362101 RchiOBHm_Chr4g0395401
rosa_laevigata	RLG00000009625
rosa_multiflora	Rmu_sc0004598.1_g000001 Rmu_sc0010817.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340360
rosa_rugosa	Rorug01G0293700 Rorug03G0357600
rosa_samantha	Rh1AG304400 Rh2BG188400 Rh4AG059600 Rh4BG058100 Rh4CG063600 Rh4DG054700 Rh6AG105300 Rh7AG389000 Rh7CG408200 Rh7DG387000
rosa_wichuraiana	Rw0G003300 Rw0G007660 Rw4G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	50
AclWI	GGATC	2 cut(s)	503, 655
AcoI	YGGCCR	1 cut(s)	677
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	3 cut(s)	197, 387, 542
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	1 cut(s)	553
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	3 cut(s)	127, 167, 395
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	6 cut(s)	159, 184, 302, 426, 534, 702
AluI	AGCT	6 cut(s)	159, 184, 302, 426, 534, 702
AlwI	GGATC	2 cut(s)	503, 655
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	33, 381, 677
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	226, 487
BauI	CACGAG	1 cut(s)	441
BccI	CCATC	4 cut(s)	25, 358, 520, 688
BceAI	ACGGC	1 cut(s)	692
BciVI	GTATCC	1 cut(s)	216
BclI	TGATCA	1 cut(s)	244
BfaI	CTAG	1 cut(s)	80
BfrI	CTTAAG	1 cut(s)	632
BfuI	GTATCC	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	1 cut(s)	662
BmuI	ACTGGG	1 cut(s)	699
BpmI	CTGGAG	2 cut(s)	258, 282
Bsa29I	ATCGAT	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	652
BsaJI	CCNNGG	2 cut(s)	210, 606
Bse1I	ACTGG	3 cut(s)	275, 456, 694
Bse3DI	GCAATG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	652
BseCI	ATCGAT	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	210, 606
BseGI	GGATG	1 cut(s)	36
BseJI	GATNNNNATC	1 cut(s)	652
BseMI	GCAATG	1 cut(s)	58
BseNI	ACTGG	3 cut(s)	275, 456, 694
BshFI	GGCC	3 cut(s)	35, 383, 679
BshVI	ATCGAT	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	625
BsnI	GGCC	3 cut(s)	35, 383, 679
Bsp143I	GATC	4 cut(s)	244, 354, 495, 647
BspANI	GGCC	3 cut(s)	35, 383, 679
BspDI	ATCGAT	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	503, 655
BspTI	CTTAAG	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	275, 456, 694
BssECI	CCNNGG	2 cut(s)	210, 606
BssMI	GATC	4 cut(s)	244, 354, 495, 647
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	2 cut(s)	210, 606
Bst2BI	CACGAG	1 cut(s)	441
Bst4CI	ACNGT	3 cut(s)	307, 475, 629
Bst6I	CTCTTC	2 cut(s)	228, 390
BstAFI	CTTAAG	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	705
BstF5I	GGATG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	4 cut(s)	247, 357, 498, 650
BstMBI	GATC	4 cut(s)	244, 354, 495, 647
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 371, 380
BstNSI	RCATGY	1 cut(s)	254
Bsu15I	ATCGAT	1 cut(s)	353
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	35, 383, 679
BsuTUI	ATCGAT	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	424
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	2 cut(s)	251, 558
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	1 cut(s)	705
DpnI	GATC	4 cut(s)	246, 356, 497, 649
DpnII	GATC	4 cut(s)	244, 354, 495, 647
DraIII	CACNNNGTG	1 cut(s)	443
EaeI	YGGCCR	1 cut(s)	677
Eam1104I	CTCTTC	2 cut(s)	228, 390
EarI	CTCTTC	2 cut(s)	228, 390
Eco130I	CCWWGG	2 cut(s)	210, 606
Eco57I	CTGAAG	3 cut(s)	197, 387, 542
EcoT14I	CCWWGG	2 cut(s)	210, 606
ErhI	CCWWGG	2 cut(s)	210, 606
FaeI	CATG	2 cut(s)	254, 561
FaiI	YATR	8 cut(s)	101, 201, 252, 330, 347, 531, 559, 590
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	2 cut(s)	250, 557
FbaI	TGATCA	1 cut(s)	244
FokI	GGATG	1 cut(s)	43
FspBI	CTAG	1 cut(s)	80
FspI	TGCGCA	1 cut(s)	50
GlaI	GCGC	1 cut(s)	50
GsuI	CTGGAG	2 cut(s)	258, 282
HaeIII	GGCC	3 cut(s)	35, 383, 679
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	254, 561
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	85, 526
HphI	GGTGA	2 cut(s)	226, 487
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	4 cut(s)	143, 522, 543, 672
Hpy188III	TCNNGA	3 cut(s)	260, 461, 684
Hpy8I	GTNNAC	1 cut(s)	554
HpyAV	CCTTC	6 cut(s)	173, 211, 266, 274, 362, 373
HpyCH4III	ACNGT	3 cut(s)	307, 475, 629
HpyCH4V	TGCA	2 cut(s)	56, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 371, 380
HpyF3I	CTNAG	1 cut(s)	705
Hsp92II	CATG	2 cut(s)	254, 561
HspAI	GCGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	244, 354, 495, 647
LmnI	GCTCC	4 cut(s)	20, 118, 164, 371
LpnPI	CCDG	8 cut(s)	7, 208, 288, 312, 436, 469, 474, 675
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	1 cut(s)	80
MalI	GATC	4 cut(s)	246, 356, 497, 649
MboI	GATC	4 cut(s)	244, 354, 495, 647
MboII	GAAGA	4 cut(s)	190, 245, 407, 535
MluCI	AATT	1 cut(s)	137
MnlI	CCTC	4 cut(s)	29, 50, 444, 450
MseI	TTAA	1 cut(s)	633
MspCI	CTTAAG	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	308, 371, 380
NdeII	GATC	4 cut(s)	244, 354, 495, 647
NlaIII	CATG	2 cut(s)	254, 561
NlaIV	GGNNCC	1 cut(s)	16
NsbI	TGCGCA	1 cut(s)	50
NspI	RCATGY	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	85, 526
PspN4I	GGNNCC	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	305
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	633
Sau3AI	GATC	4 cut(s)	244, 354, 495, 647
SfaNI	GCATC	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	1 cut(s)	137
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	1 cut(s)	80
StyI	CCWWGG	2 cut(s)	210, 606
TaaI	ACNGT	3 cut(s)	307, 475, 629
TaqI	TCGA	1 cut(s)	353
TasI	AATT	1 cut(s)	137
TatI	WGTACW	1 cut(s)	551
TfiI	GAWTC	2 cut(s)	85, 526
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	1 cut(s)	282
TspDTI	ATGAA	2 cut(s)	140, 416
TspRI	CASTG	1 cut(s)	282
Vha464I	CTTAAG	1 cut(s)	632
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	1 cut(s)	254
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.