Rh4BG058100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003585
Physical Location & Seq
Forward (+)
10439879 .. 10445501
5623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG058100.1

Sequence Viewer

Length: 480 bp
ATGGCCTACCTCTCTGTGCGCAATGCAGAGCCAAGGGGCAAAGGGGACAAAGATGTTTCTCCAGCTACTGTTGCAAAAGTTCCAAAATCTTATGTTCCAAGAGTAGTTATGCCATCGATCTCTGTTGCTGAAGGAGCAAAGAAGGCCAATAAGATTGAAGAGATGAATAAACAAAATATTAGAGCCAGCTCAATCCCTCCACCTCGTGCTGTCTTATCCAGTCCTGACAATGATACGGTGATTGGAAACAAAAATAGGATCAAAGCACAACGACCATCTGCTCTGAAGAATCATAGCTTGGTTCAGAATAGAAGTACGCCATGTATTCCACTCCACATTACTGAAAACTCCATAAATACAAAAAAATCAAAGGGGACTTTAGTTGAGAACTGTCTTAAGGAAAGGAAAGGATCAGCATCAAAACTAACAAGTCAGATACGGCCATCAAGAACTGGGAAATCAAGCTTTAAGGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.31

Weight (kDa)

10.41

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 20
AclWI GGATC 2 cut(s) 266, 418
AcoI YGGCCR 1 cut(s) 440
AcuI CTGAAG 2 cut(s) 150, 305
AdeI CACNNNGTG 1 cut(s) 206
AfaI GTAC 1 cut(s) 316
AflII CTTAAG 1 cut(s) 395
AgsI TTSAA 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AluBI AGCT 4 cut(s) 65, 189, 297, 465
AluI AGCT 4 cut(s) 65, 189, 297, 465
AlwI GGATC 2 cut(s) 266, 418
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 3 cut(s) 3, 144, 440
AspLEI GCGC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 250
BauI CACGAG 1 cut(s) 204
BccI CCATC 3 cut(s) 121, 283, 451
BceAI ACGGC 1 cut(s) 455
BfrI CTTAAG 1 cut(s) 395
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 425
BmuI ACTGGG 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 45
Bsa29I ATCGAT 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 415
BsaJI CCNNGG 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 219, 457
Bse3DI GCAATG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 415
BseCI ATCGAT 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 415
BseMI GCAATG 1 cut(s) 28
BseNI ACTGG 2 cut(s) 219, 457
BshFI GGCC 3 cut(s) 5, 146, 442
BshVI ATCGAT 1 cut(s) 116
BslFI GGGAC 2 cut(s) 59, 388
BsmFI GGGAC 2 cut(s) 59, 388
BsnI GGCC 3 cut(s) 5, 146, 442
Bsp143I GATC 3 cut(s) 117, 258, 410
BspANI GGCC 3 cut(s) 5, 146, 442
BspDI ATCGAT 1 cut(s) 116
BspPI GGATC 2 cut(s) 266, 418
BspTI CTTAAG 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 2 cut(s) 219, 457
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 3 cut(s) 117, 258, 410
BssSI CACGAG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 70, 238, 392
Bst6I CTCTTC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 187
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 3 cut(s) 120, 261, 413
BstMBI GATC 3 cut(s) 117, 258, 410
BstMWI GCNNNNNNNGC 3 cut(s) 71, 134, 143
Bsu15I ATCGAT 1 cut(s) 116
BsuRI GGCC 3 cut(s) 5, 146, 442
BsuTUI ATCGAT 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 68
CfoI GCGC 1 cut(s) 21
ClaI ATCGAT 1 cut(s) 116
Csp6I GTAC 1 cut(s) 315
CviAII CATG 1 cut(s) 321
CviJI RGCY 9 cut(s) 5, 31, 65, 146, 185, 189, 297, 442, 465
CviKI_1 RGCY 9 cut(s) 5, 31, 65, 146, 185, 189, 297, 442, 465
CviQI GTAC 1 cut(s) 315
DpnI GATC 3 cut(s) 119, 260, 412
DpnII GATC 3 cut(s) 117, 258, 410
DraIII CACNNNGTG 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 32
Eco57I CTGAAG 2 cut(s) 150, 305
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 1 cut(s) 324
FaiI YATR 5 cut(s) 93, 110, 294, 322, 353
FaqI GGGAC 2 cut(s) 59, 388
FatI CATG 1 cut(s) 320
FspI TGCGCA 1 cut(s) 20
GlaI GCGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 3 cut(s) 5, 146, 442
HhaI GCGC 1 cut(s) 21
Hin1II CATG 1 cut(s) 324
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 1 cut(s) 289
HphI GGTGA 1 cut(s) 250
Hpy188I TCNGA 3 cut(s) 285, 306, 435
Hpy188III TCNNGA 2 cut(s) 224, 447
HpyAV CCTTC 2 cut(s) 125, 136
HpyCH4III ACNGT 3 cut(s) 70, 238, 392
HpyCH4V TGCA 2 cut(s) 26, 74
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 134, 143
Hsp92II CATG 1 cut(s) 324
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 3 cut(s) 117, 258, 410
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 5 cut(s) 75, 199, 232, 237, 438
LweI GCATC 1 cut(s) 425
MalI GATC 3 cut(s) 119, 260, 412
MboI GATC 3 cut(s) 117, 258, 410
MboII GAAGA 2 cut(s) 170, 298
MnlI CCTC 3 cut(s) 20, 207, 213
MseI TTAA 2 cut(s) 396, 468
MspCI CTTAAG 1 cut(s) 395
MwoI GCNNNNNNNGC 3 cut(s) 71, 134, 143
NdeII GATC 3 cut(s) 117, 258, 410
NlaIII CATG 1 cut(s) 324
NsbI TGCGCA 1 cut(s) 20
PfeI GAWTC 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 396, 468
Sau3AI GATC 3 cut(s) 117, 258, 410
SetI ASST 6 cut(s) 12, 67, 191, 205, 299, 467
SfaNI GCATC 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SspI AATATT 1 cut(s) 178
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 3 cut(s) 70, 238, 392
TaqI TCGA 1 cut(s) 116
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 2 cut(s) 396, 468
Tru9I TTAA 2 cut(s) 396, 468
TspDTI ATGAA 1 cut(s) 179
Vha464I CTTAAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.