Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003585

Physical Location & Seq

Genomic Coordinates Reverse (-)

52402367 .. 52402648

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG408200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGTGTTACTTGTTAAGGATATAGGACTGGAAAGTAAAAACAATCCTAATTTAGGATTGGAACCCGATGACACTCCTTATCAAGATCTCAAGACTATGGGATTGAAGTTTGGTAACAATCCTGATACCGGATTGAGAGGCAATAGTGGTCCAAGACTAGACGATATGCAGGCCTCTGCTCACATCAGTGCCAAAGCACAACCTTATGCTCCAAGACATAAGATTCCATCTGACTGGAGCAGTGGAGCAGACGCTCAAAGCAAGACAAGGAGGAGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.1

Weight (kDa)

8.05

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21865
fragaria_vesca	FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630
malus_domestica	MD16G1226400.v1.1
prunus_persica	Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1
pyrus_communis	pycom16g18960
rosa_chinensis	RchiOBHm_Chr1g0362101 RchiOBHm_Chr4g0395401
rosa_laevigata	RLG00000009625
rosa_multiflora	Rmu_sc0004598.1_g000001 Rmu_sc0010817.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340360
rosa_rugosa	Rorug01G0293700 Rorug03G0357600
rosa_samantha	Rh1AG304400 Rh2BG188400 Rh4AG059600 Rh4BG058100 Rh4CG063600 Rh4DG054700 Rh6AG105300 Rh7AG389000 Rh7CG408200 Rh7DG387000
rosa_wichuraiana	Rw0G003300 Rw0G007660 Rw4G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	53, 128
AgsI	TTSAA	1 cut(s)	106
AleI	CACNNNNGTG	1 cut(s)	186
AoxI	GGCC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	149
BccI	CCATC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	158
BglII	AGATCT	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	63, 275
BpmI	CTGGAG	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 128
Bse1I	ACTGG	2 cut(s)	33, 239
BseLI	CCNNNNNNNGG	2 cut(s)	53, 128
BseNI	ACTGG	2 cut(s)	33, 239
BshFI	GGCC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	53, 128
BsnI	GGCC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	173
BspLI	GGNNCC	2 cut(s)	63, 275
BsrI	ACTGG	2 cut(s)	33, 239
BssMI	GATC	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	173
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	193, 247
Cac8I	GCNNGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	149
CseI	GACGC	1 cut(s)	260
CviJI	RGCY	2 cut(s)	173, 276
CviKI_1	RGCY	2 cut(s)	173, 276
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	51
FaiI	YATR	5 cut(s)	23, 98, 167, 207, 219
FspBI	CTAG	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	260
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	83, 91, 122
HpyCH4V	TGCA	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	4 cut(s)	214, 237, 245, 273
LpnPI	CCDG	5 cut(s)	14, 135, 142, 155, 220
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	2 cut(s)	6, 113
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MflI	RGATCY	1 cut(s)	85
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	3 cut(s)	131, 184, 264
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	85
NlaIV	GGNNCC	2 cut(s)	63, 275
OliI	CACNNNNGTG	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	63, 275
PspPI	GGNCC	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	149
SetI	ASST	1 cut(s)	205
SinI	GGWCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	49
SseBI	AGGCCT	1 cut(s)	173
SspMI	CTAG	1 cut(s)	158
StuI	AGGCCT	1 cut(s)	173
TasI	AATT	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	193, 247
TspRI	CASTG	2 cut(s)	193, 247
VpaK11BI	GGWCC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	51
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.