Rw0G003300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00113
OG0003585
Physical Location & Seq
Forward (+)
26270 .. 28681
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003300.1

Sequence Viewer

Length: 525 bp
ATGATGGATGTGTATCCCAAGGTGAAGGTCAGACAACAAGAAGAGAAAGATGATCAACATGCCCTTCTTGATTTTTCTACTCCAGTGAAGGACAAAGATGTTTCTCCAGCTACTGTTGCAAAAGTTCCAAAATCTTATGTTCCAAGAGTAGTTATGCCATCGATCTCTGTTGCTGAAGGAGCAAAGAAGGCCAATAAGATTGAAGAGATGAATAAACAAAATATTAGAGCCAGCTCAATCCCTCCACCTCGTGCTGTCTTATCCAGTCCTGACAATGATACGGTGATTGGAAACAAAAATAGGATCAAAGCACAACGACCATCTGCTCTGAAGAATCATAGCTTGGTTCAGAATAGAAGTACGCCATGTATTCCACTCCACATTACTGAAAACTCCATAAATACAAAAAAATCCAAGGGGACTTTAGTTGAGAACTGTCTTAAGGAAAGGAAAGGATCGGCATCAAAACTAACAAGTCAGATACGGCCATCAAGAACTGGGAAATCAAGCTTTAAGGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.24

Weight (kDa)

10.04

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 311, 463
AcoI YGGCCR 1 cut(s) 485
AcuI CTGAAG 2 cut(s) 195, 350
AdeI CACNNNGTG 1 cut(s) 251
AfaI GTAC 1 cut(s) 361
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 4 cut(s) 110, 234, 342, 510
AluI AGCT 4 cut(s) 110, 234, 342, 510
AlwI GGATC 2 cut(s) 311, 463
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 2 cut(s) 189, 485
AsuHPI GGTGA 2 cut(s) 34, 295
BauI CACGAG 1 cut(s) 249
BccI CCATC 3 cut(s) 166, 328, 496
BceAI ACGGC 1 cut(s) 500
BciVI GTATCC 1 cut(s) 24
BclI TGATCA 1 cut(s) 52
BfrI CTTAAG 1 cut(s) 440
BfuI GTATCC 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 507
BmsI GCATC 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 507
BpmI CTGGAG 2 cut(s) 66, 90
Bsa29I ATCGAT 1 cut(s) 161
BsaBI GATNNNNATC 2 cut(s) 12, 460
BsaJI CCNNGG 2 cut(s) 18, 414
Bse1I ACTGG 3 cut(s) 83, 264, 502
Bse8I GATNNNNATC 2 cut(s) 12, 460
BseCI ATCGAT 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 18, 414
BseGI GGATG 1 cut(s) 13
BseJI GATNNNNATC 2 cut(s) 12, 460
BseNI ACTGG 3 cut(s) 83, 264, 502
BshFI GGCC 2 cut(s) 191, 487
BshVI ATCGAT 1 cut(s) 161
BslFI GGGAC 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 2 cut(s) 191, 487
Bsp143I GATC 4 cut(s) 52, 162, 303, 455
BspANI GGCC 2 cut(s) 191, 487
BspDI ATCGAT 1 cut(s) 161
BspPI GGATC 2 cut(s) 311, 463
BspTI CTTAAG 1 cut(s) 440
BsrI ACTGG 3 cut(s) 83, 264, 502
BssECI CCNNGG 2 cut(s) 18, 414
BssMI GATC 4 cut(s) 52, 162, 303, 455
BssSI CACGAG 1 cut(s) 249
BssT1I CCWWGG 2 cut(s) 18, 414
Bst2BI CACGAG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 115, 283, 437
Bst6I CTCTTC 2 cut(s) 36, 198
BstAFI CTTAAG 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 232
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 4 cut(s) 55, 165, 306, 458
BstMBI GATC 4 cut(s) 52, 162, 303, 455
BstMWI GCNNNNNNNGC 3 cut(s) 116, 179, 188
BstNSI RCATGY 1 cut(s) 62
Bsu15I ATCGAT 1 cut(s) 161
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 2 cut(s) 191, 487
BsuTUI ATCGAT 1 cut(s) 161
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 232
CaiI CAGNNNCTG 1 cut(s) 113
ClaI ATCGAT 1 cut(s) 161
Csp6I GTAC 1 cut(s) 360
CviAII CATG 2 cut(s) 59, 366
CviJI RGCY 7 cut(s) 110, 191, 230, 234, 342, 487, 510
CviKI_1 RGCY 7 cut(s) 110, 191, 230, 234, 342, 487, 510
CviQI GTAC 1 cut(s) 360
DpnI GATC 4 cut(s) 54, 164, 305, 457
DpnII GATC 4 cut(s) 52, 162, 303, 455
DraIII CACNNNGTG 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 485
Eam1104I CTCTTC 2 cut(s) 36, 198
EarI CTCTTC 2 cut(s) 36, 198
Eco130I CCWWGG 2 cut(s) 18, 414
Eco57I CTGAAG 2 cut(s) 195, 350
EcoT14I CCWWGG 2 cut(s) 18, 414
ErhI CCWWGG 2 cut(s) 18, 414
FaeI CATG 2 cut(s) 62, 369
FaiI YATR 6 cut(s) 60, 138, 155, 339, 367, 398
FaqI GGGAC 1 cut(s) 433
FatI CATG 2 cut(s) 58, 365
FbaI TGATCA 1 cut(s) 52
FokI GGATG 1 cut(s) 20
GsuI CTGGAG 2 cut(s) 66, 90
HaeIII GGCC 2 cut(s) 191, 487
Hin1II CATG 2 cut(s) 62, 369
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 1 cut(s) 334
HphI GGTGA 2 cut(s) 34, 295
Hpy188I TCNGA 4 cut(s) 32, 330, 351, 480
Hpy188III TCNNGA 3 cut(s) 68, 269, 492
HpyAV CCTTC 5 cut(s) 19, 74, 82, 170, 181
HpyCH4III ACNGT 3 cut(s) 115, 283, 437
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 179, 188
Hsp92II CATG 2 cut(s) 62, 369
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 4 cut(s) 52, 162, 303, 455
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 6 cut(s) 96, 120, 244, 277, 282, 483
LweI GCATC 1 cut(s) 470
MalI GATC 4 cut(s) 54, 164, 305, 457
MboI GATC 4 cut(s) 52, 162, 303, 455
MboII GAAGA 3 cut(s) 53, 215, 343
MnlI CCTC 2 cut(s) 252, 258
MseI TTAA 2 cut(s) 441, 513
MspCI CTTAAG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 116, 179, 188
NdeII GATC 4 cut(s) 52, 162, 303, 455
NlaIII CATG 2 cut(s) 62, 369
NspI RCATGY 1 cut(s) 62
PfeI GAWTC 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 441, 513
Sau3AI GATC 4 cut(s) 52, 162, 303, 455
SetI ASST 7 cut(s) 24, 30, 112, 236, 250, 344, 512
SfaNI GCATC 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SspI AATATT 1 cut(s) 223
StyI CCWWGG 2 cut(s) 18, 414
TaaI ACNGT 3 cut(s) 115, 283, 437
TaqI TCGA 1 cut(s) 161
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 2 cut(s) 441, 513
Tru9I TTAA 2 cut(s) 441, 513
TscAI CASTG 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 224
TspRI CASTG 1 cut(s) 90
Vha464I CTTAAG 1 cut(s) 440
XceI RCATGY 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.